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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DUXAP7
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr20:18642309-18642904  UCSC
Coordinates (T2T) chr20:18693331-18693926  UCSC
Coordinates (hg19) chr20:18622953-18623548  UCSC
Strand -
Parental Sequence NM_001012729.2
Parental seq. overlap 384 bp
Parental seq. overlap (%) 36%
Genomic Region Intragenic (DTD1)
Retrocopy Summary DUXAP7, located on chr20:18642309-18642904, is a retrocopy of the parental gene DUXA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DUXA
Full Name double homeobox A
Also known as -
Coordinate chr19:57154021-57167485
Strand -
Gene summary Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This gene is a member of the DUXA homeobox gene family. Evidence of mRNA expression has not yet been found for this gene. Multiple, related processed pseudogenes have been found which are thought to reflect expression of this gene in the germ line or embryonic cells. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DUXAP4
Bonobo Pan paniscus DUXAP5
Gorilla Gorilla gorilla DUXAP6
Orangutan Pongo abelii DUXAP6
Gibbon Nomascus leucogenys DUXAP2
Green monkey Chlorocebus sabaeus DUXAP1
Crab-eating macaque Macaca fascicularis DUXAP5
Rhesus Macaca mulatta DUXAP5
Baboon Papio anubis DUXAP4
Golden snub-nosed monkey Rhinopithecus roxellana DUXAP5
Marmoset Callithrix jacchus DUXAP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DUXAP7
TAAAATAAATAAAAAGAACTGTAGGAGGCAGAGATAGGTACAAGAGGCATCACACTACCCTACTGACACAGCCTGGATCCAGAGTTCAGCAGACCTTGAGACAATGAAAATAAACTTAATAATAATAAGAAATTGGTGCTCCAGAGTCAAGAGTCCAAATTTGGTTCCAAAATCAAAGATCTAGATTTCATCTTCAGAGAAAAAGGGAACCTGTTGTGTCCTTAGAACAAGAAGACCAGGGGCAAGATCTCTGAGGGACTTCAAGGTACAGAAGACACATACAATAGCACCAACCTCACTAGCAACTGTCACTTCCCTAGAGCCAGAACATGGTGAAAACACTCAAGTTCAGTGTATTTAGTATTATCAACTTGGGTCCCAAATCTCTCTCACGGTCTTCCTGGGAGTCGATCCTTCTGCTGAAACTGCAAGCTAAGCCTTCTGAAGAGGGTAAACAACTT
>NM_001012729.2
GTCTCCCAGACAGTGGCTCAGCCTTCAGGACTCTCTTCCAGCATGGCCGAAGACACCTATTCACACAAGATGGTAAAAACAAATCATAGGCGCTGTCGCACAAAATTCACAGAAGAACAGTTGAAAATCCTCATCAATACCTTCAATCAAAAGCCTTACCCAGGTTATGCTACCAAACAAAAACTTGCTTTAGAAATCAATACAGAAGAGTCCAGAATCCAGATTTGGTTTCAGAATCGAAGAGCTAGGCACGGATTCCAGAAAAGACCAGAAGCTGAGACTTTAGAATCAAGCCAGAGCCAGGGGCAAGATCAACCTGGTGTGGAGTTTCAAAGTAGAGAAGCCAGACGGTGTCGTACCACCTACAGCGCCTCTCAGTTACACACTCTCATCAAGGCATTTATGAAAAACCCATATCCTGGGATTGATTCCAGAGAAGAACTTGCTAAAGAAATCGGTGTTCCAGAGTCAAGAGTCCAAATTTGGTTCCAAAATCGAAGATCTAGATTACTTCTCCAGAGAAAAAGGGAACCTGTGGCGTCCTTAGAACAAGAAGAGCAGGGCAAGATTCCTGAGGGACTGCAAGGTGCAGAAGATACACAAAATGGCACCAACTTCACTAGTGACTCTCATTTCTCTGGAGCCAGAACGTGGTGAACACAGTCAAATTCAGTGTACTTGATAATATCAACTGGACCCCAAATCTGTCTCACGGTCTTCCTGGGAGTCTATCCTTCTGCTGAAACTGCAAGCTAAGCCTTCTGAAGATGGTAAAGGACTTggccagatgtggtgggtcacacttgtaatcccactactttgggaggccaaggcaggaagattgcttgagctcaggagtttgaaaccagcctggacaacatatagcaagactctgcctctattataaaaaaacaaaaTAAATGAAAAGGACTGTAGGAGGCAGAGACGGGTACAGGGGGTACCACACTACCCTGTTGACACAGCCTAGATCCAGAGTTCAGAAGACCTTGAGACAATGAAAATAAACTTGGTAATAATCTTTTTTCAA

Publications

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