Retrocopy Name | GINS2P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr20:38614370-38615532 UCSC | |
Coordinates (T2T) | chr20:40344025-40345187 UCSC | |
Coordinates (hg19) | chr20:37243013-37244175 UCSC | |
Strand | - | |
Parental Sequence | NM_016095.3 | |
Parental seq. overlap | 1056 bp | |
Parental seq. overlap (%) | 39.9% | |
Genomic Region |
Intragenic (ARHGAP40) |
|
Retrocopy Summary | GINS2P1, located on chr20:38614370-38615532, is a retrocopy of the parental gene GINS2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | GINS2 |
Full Name | GINS complex subunit 2 |
Also known as | HSPC037|PSF2|Pfs2 |
Coordinate | chr16:85676198-85688954 |
Strand | - |
Gene summary | The yeast heterotetrameric GINS complex is made up of Sld5 (GINS4; MIM 610611), Psf1 (GINS1; MIM 610608), Psf2, and Psf3 (GINS3; MIM 610610). The formation of this complex is essential for the initiation of DNA replication in yeast and Xenopus egg extracts (Ueno et al., 2005 [PubMed 16287864]). See GINS1 for additional information about the GINS complex.[supplied by OMIM, Mar 2008] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | GINS2P1 |
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Bonobo | Pan paniscus | GINS2P1 |
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Gorilla | Gorilla gorilla | GINS2P1 |
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Orangutan | Pongo abelii | GINS2P2 |
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Gibbon | Nomascus leucogenys | GINS2P2 |
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Green monkey | Chlorocebus sabaeus | GINS2P1 |
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Crab-eating macaque | Macaca fascicularis | GINS2P1 |
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Rhesus | Macaca mulatta | GINS2P1 |
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Baboon | Papio anubis | GINS2P2 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | GINS2P1 |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>GINS2P1 |
GGGACACTGAAGGGCCCAAGGAGACTGTGAGGCCCGAGCTGGCCACTCGCGCCGCCATGGACGTGGCCGAGGTCGAGTTCCTGGCTGAGAAGGAGCTGGTTACCATTATCCCCAACTTCAGTCTGGACAAGAGCTACCTCATTGGGGTGGGTACCTGGGGCCTTTTAACCCTGGTTTACCAGTGGAAGTACCCCCGTGGCTGGCAATTAACCTGAAACAAAAGCAGAAATGTCGACTGCTCCCTCCGGAGTGGATGAACATAGAAAAGTTGGAGAAGATGAGGGATCATGAATGAAAGGAAGAAACTTTTTTACCTCAATGCCCACCAGCCTTTACTACATGGAACTTACCAAGCTCCCATTAAATCATGCTTCAGACAACATCCCGAAGGCAGACGAAATCCGGACCCTGGTCAAGGATATATGGGACACTCGTATAGCCAAACTCCGAGTGTCTGCTGACAGCTTTGTGAGGCAACAGGAGGCACATGCCAAGCCGGATAACTTGACCTTGATGGAGATCAACCCCAGCGGGACTTTCCTCACACAAGCGCTCAACCACACGTACAAACTCGCACAAACCTCCAGCCTTCGGAGAGTACTCAGTCTCAGGACTTCTAGAGAAAGGCCTGGTGCAGGCAGCTTGCTGGGGGATGTGACGCTCAGGACGTGATGAGGTACTCATGGTTCTGGAGCTCTAGAGACACTTTTGAATGCATGAAAAACGTGCGATGGTGCAAGGAATGGATTCATGACATTGTTGGAGAAGCAACAAGTTTGTGGCTAGTCCTTAAAACTTAGCTCCCTGGGACATTCTTCAATTCCACATCTACTTCTAGAAATCAGCCTTCTCTGCCCCCTCTTTTGAGAAAGAAAAAAGCTTTAGGCAAATAAGTTATTGTCCCTAGCAGAGCCGCTTGGGTCTCCTGCATGGAAACCGTCACCTTGGGTAAGTGTTCAGTGACTGGTAGGTGTAGATATAGCAGGAGTGGCCATGTGGCCAATGGTTTTTTTTCCCCCTTCTTGATCCTGATTTCTTGGGCTAAATTTAGACGCTCCTATAGAGATGGGTCACAGAGAAGGATGGTAGATGGTGCAGCTAATGATGCTGACCAGTGCTTATGCTCTAAGCCCCGATCCACAATAAAAATGGACCCAACTCAA |
>NM_016095.3 |
GGGACGCTGAGGGGCCCGAGGAGACCGTGAGGCTCTGGCCTGCAGCTCGCGCCGCCATGGACGCTGCCGAGGTCGAATTCCTCGCCGAGAAGGAGCTGGTTACCATTATCCCCAACTTCAGTCTGGACAAGATCTACCTCATCGGGGGGGACCTGGGGCCTTTTAACCCTGGTTTACCCGTGGAAGTGCCCCTGTGGCTGGCGATTAACCTGAAACAAAGACAGAAATGTCGCCTGCTCCCTCCAGAGTGGATGGATGTAGAAAAGTTGGAGAAGATGAGGGATCATGAACGAAAGGAAGAAACTTTTACCCCAATGCCCAGCCCTTACTACATGGAACTTACGAAGCTCCTGTTAAATCATGCTTCAGACAACATCCCGAAGGCAGACGAAATCCGGACCCTGGTCAAGGATATGTGGGACACTCGTATAGCCAAACTCCGAGTGTCTGCTGACAGCTTTGTGAGACAGCAGGAGGCACATGCCAAGCTGGATAACTTGACCTTGATGGAGATCAACACCAGCGGGACTTTCCTCACACAAGCGCTCAACCACATGTACAAACTCCGCACGAACCTCCAGCCTCTGGAGAGTACTCAGTCTCAGGACTTCTAGAGAAAGGCCTGGTGCAGGCGGCTTGCTGGGGGATGTGAGCGCTCAGGACGTGATGAGGTACTCGTGGTTCTGGAGCTCTAGAAACACTTCTGATGCATGAAAAATGTGTGATGGTGCAAGGAATGGATTCAGGATGTTGTTGGAGAAACAAGTTTGTGATTAGTCCTTAAAACTTAGCTCCCTGGGACATTCTTCAATTCCACATCTGTTTCTAGAAACCAGCCCTTTTTCCCCCCACTTTTGAGAAATAAAAAAGCCTTAGGTAAATAAGTCATTCTCCCTAGCAGAGCCACTTGGGTCTCCTGCATGGAAGCCATCACACTTGGGCAGGTGTTCAGTGACTGGTAGGTGTAGATACAGCAGGAGTGGCCATGTGGTCCACGGCTTTTTACCCCTTCTTGATCCTGATTTCTTGGGCTGAATTTAGACTCTCTCACAGAGGTGGCTCACAGAGAAGGATGGCAGATGGTGCAGCCAACAATGCTGACCGGTGCTTATCCTCTAAGCCCTGATCCACAATAAAAATGGACCCAACTCAGCTCTGACTCTCTAGGTTTTTGTGCTGCGTAACTACCAAGTAAAAGGACTGAGCCTGTGGCTGAGATGACTCAGTCAACGAAACTGAGGCACACGGCAGTTAAGTGGAAACTGCAGACCAACACCTGGGGTGTCTCCTTCTCTTGGCTACTTCTAGCTCAGGTTTAATGGGTTGCTTATCAAGAGGAGAGTCAGGAAAAAAACGAATCCAATGTATTGAGCATGAGTGACAATGTATTGAGCATGAGTGACAATGCTAGAAGAAAAGTCACTTTCAGTGCTGCTCTTGATGGATTTGGGGAAGGATTCTTTGTTGTAGGTAACAGTGGGCTCAGGGGAAATTATTTTTTTCCTAAGAGAAAATTACTTTATTCGTAGCATTTTGGAAATGTTAGGACCTTTACAGAAATTACATTACCTTGAGAGGTGAAATGATCGTCCAGCATCATGCAATGGATAGAAGGTTCTGTAATCAGCTTTAAAAAAAACTTTAATTTTTggccgggcacattggcttggctcatgcatgtaatcccagcactttgggaggccaaggcaggtggatcacaaggccaggagattgagactatcctggctaacatggtgaaaccccgtctctattaaaaatacaaaaaaaaaaaaatttgccaggtgtggtggcacacgcctatagtcgcagctactcgggaggctgaggcaggagaatcgcttgaacccgagaggcggaggttgtagtgagccaagattgcaccactgtactcctgcctgggcaacgagagcaagactctgtctcaaacaaaaaaaattttaactttttttttagacagggtctcgttctgtcatccaggctgcagtagagtggcgtgattatagctcactgcagcctcgaactcctgggttcacacagttctcccaccacagcctcccaaagcactgggattgcaagcatgagccgccatgcctggcCAGCCTATTTTTGGCTGGACACCAGTGGGCCAAAAGCAGTGGGGTGCTGTCTGGGGAGCTCTGAGAATGCGCATGTGTGACAGGCTGAGCCTAAAGACTTATCACCCAGCATCTGCCCTCCAGTGTCTAGCATGCTGCACACTATCACTCCATGTTGCTGCCCACGTGTCCCCGCCAGGCAGGTTTTGGTGGTTATTTGGACACTGAAGGGTCAGACCTGGAAGACTGGGACCAAAAGATGAGGTCTCCATAATTTAAGGTGCTGTTCAGACTTGGTTCAGCTCATAGGACTTGTTCTTTCATCTCAGCCTTCCTTGGAATCCTCCTGCTTTCATCTGGGGATCTTTTAGAATGAAACCACTTGTTATTGTGGAGGGCAAGGGGTCCTAATGCCCTCCTCTTAGAGCCTGAGCCAGTGGAGGCAGCTCCGTCTGCGGAGATGTATAGTTATTGAGCTTTTCTTTGTTTGGCTTTGTTTTATATCATAAAAAAGATTTTCCTCTTAACATAA |
PMID - Link | Title |
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