Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GLYR1P1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr20:49829543-49833460  UCSC
Coordinates (T2T) chr20:51599072-51602991  UCSC
Coordinates (hg19) chr20:48446080-48449997  UCSC
Strand +
Parental Sequence NM_032569.4
Parental seq. overlap 3164 bp
Parental seq. overlap (%) 83.7%
Genomic Region Intragenic (SLC9A8)
Retrocopy Summary GLYR1P1, located on chr20:49829543-49833460, is a retrocopy of the parental gene GLYR1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GLYR1
Full Name glyoxylate reductase 1 homolog
Also known as BM045|HIBDL|N-PAC|NP60|NPAC|hNDF
Coordinate chr16:4803203-4848032
Strand -
Gene summary Enables DNA binding activity; methylated histone binding activity; and nucleosome binding activity. Involved in positive regulation of histone acetylation and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of nucleosome. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes GLYR1P1
Bonobo Pan paniscus GLYR1P1
Gorilla Gorilla gorilla GLYR1P1
Orangutan Pongo abelii GLYR1P1
Gibbon Nomascus leucogenys GLYR1P1
Crab-eating macaque Macaca fascicularis GLYR1P1
Rhesus Macaca mulatta GLYR1P1
Baboon Papio anubis GLYR1P1
Golden snub-nosed monkey Rhinopithecus roxellana GLYR1P1
Marmoset Callithrix jacchus GLYR1P1
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GLYR1P1
TGGAAAGAAATGCTTCTTTGTGAAATTTTTTTGGAACATAAGATCATGCCTGGATTAAAGTGAAACAGCTGAAGCCATATCATGCTCATAAAGAGGAAATGATAAAGATTCACAAGGGTAAACTATTCCAGCAAGCGGTGGATGCCGCCAAAGAGTTTCTCAGGAGAGCCCAAAGGGAAAGATCAGACGTCATCCCACAATTCTGCTGATGACAAGAATCGGCTTAATTCCAGTGAGGAGAGAAGCAGGCCAAACTCAGGTGATGAGAAGTGCAAACAGCCTGTCTGAAGGAAAAGTGAAGAAGATCATGGGAGATGGAAAGAAGGGGGTGTCTTCGGGCTCTTCAGAGACAGGCTCCAAATCCCCTCTGAAAAGAATCCAAGAGCAAAGTCCCCAGAAGCGGGGTCAGCCCCCAAAGAATGAGAAGAATGTCACCATCGTGGAGTCCGGTACCTTGAAGTGGATGATGGCCGGACCAGTGGCTGCATTTAAATGGCAGCCGACCAGAAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAAGCCATCTCTGTCTGTTACCAGGCAATCACAAAGAAGTTGAAAATATGTGAAGAGGAAACTGGTTCCACCTCCATCCGGGCAGCTGACAGCACGGCCGTGAATGGCAGCATCACAGACAAAAAGATGGGATTTGGGGGCCTTGGTCTCATGAGAAGTGGAATCGTCTCTAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCCAAGAAACGTGATTTGTTCATCTAGGAGGGGGCCCGCCTGGGAAGAACCCCTGCTGAAGTCCTCTCAACCTGTGACATCACTTTCGCCCGTGTGTTGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTATGCTGCAAGGGATCTGCCCTGGAAAGTGCTACGTGGACATGTCAACGGTGGACGCTGACATAGTCACTTAGCTGGCCTGGGTGATTGCGTCCAGGTCGGGGGGTCGCTTTCCAGAAGCTCCCATCTCAGGGAATCAGCAGCTTTCTAATCACAGAATGTTGGTGATCTTAGCAGCTGGAGACAGGGGCCTATAGGAGGACTGCAGCAGCTGCTTCCAGGCGATAGGGAAGACCTCCTCCTTCCTAGGTGAAGTTGGCAACGCAGCCAAGATGATGCTGATTGTAAACATAGTCCAAGGGAGCTTCATAGCCATGATCACTGAGGTGCTGACCCTGGCCTAGGTGACAGATCAGGCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTAGACCAGAAGTGCCAAAATACCCTGCAAGGAAACTTTAAGCCTGATTTCTACTGAAATACATGCAGAAGGATCTCTGCTTAGCCATTGCGCTGGGCAATGCGGTCAACTCTCTGACTCCCATGGCAGCTGCAGCCAACCAGGTGTACAAAAGAGCCAAGGCACTGGACCAGTCCAACAATATGTCCGCTGTGTCCTGAGCCTGCATACACTAAGCCGTCGGACCCCCCACCCCCAGCCCTCTAATCTCTCCGCTAACTCCCTCTTCCTCACATGGGGTCAGGGGCCTGGGACTTTGCTCTGGACCAGCCCACCTGTCTCCATTTCCTTTTACACAGACTTTGAGACTTGCCATCAGCACAGCACACAGCAGCACCCTTCCTTTGAGGCTGGTATGGAGGGGATGAGTGTCAGCAGGATTGGCTCATGGGAAAGCTCTTGAGCTGGGCACTGGCCTCCACACGAGGAGGTGGCTGTGTGTGCACGCACACACACGAGGAGGTGGCTGTGTACCCCAGGATAGAAACTGCCCAGAAACAGCTGCCTGGCTTTTTTTCTTCTTCCAAGCTTGTCTTATCTCAAACCCCTTCCAGTCAAGGAACTAGAATCAGCAATGAGAGTTGGAAGCCTTCCCACAGCTTCCCCAAGAGCGAAGAGGCTATAGTCATGTCCACGTCCCCCGCTGAATTCTCTGCAGGGAGAGGACTTGGGCCCAGATGAGCCAGACCAGACTCCAGACAGAGGGTCCCGTGGGGCCCCCAAACTCAGGTGATGAGCTGAGAAAGAGAAAGATGTTCATGTCTAAGTGTCCAGTGTGCACCTAGCACTCCTTAGACGCCTTTGTGAACTGAAAAGAGACTGGCAGAGTCCTGCGAAAATGAGGCCCTGGCTTTCCAGGGAGTATGGTGAGCATCTGGCCTTCGCTGCCTGGAAGTGACACCCCAGACACCACTGCCACAGTGGGCGCTTGCCCCGCCCTGGGCTGTTCTAGTATTTGGATTTGCATTCCAGTCCTTGGGAGGGGGTCCTCAGGGTCATTAGTGAGGAGCCAAGAGGAGTGGGGTTGGGGGACACTCCTTCCTGTTTCTGTTAGGCCACAGACTCTTCACCTGCCTCTGAAGAGCTGCTCTGACCTTGGTCTCCTCCCCGCAGTCCCACATTCTCCAGCCTGCCCTGCCAAGCCCCTTGCATGCCCACTGCTCTCTGTCCTCCCTTCTCCCCACCTTCCTCTCATGGAGACAGTATTTCTTTCTGTCTGTCTGTCCCTTCTTTGGCCCAGACCCAGCCTGACCAACGATAAGCATTTCTTAGGCTCAGCTCTTGATATGGAAATGAGTGTCTTCACTCCAGCCAGCATCATGGTCTTCGGTGCTTCCAGGCCTGGGGTCTGTCGGGGGTGAAAACTCTGGGGTGGGTCTGGGACATCCTCGAGGCCCTAGCATTTCTCCTTGGATAGGGGACCAGAGGGCGCTTGGGATGTTGCATAAGAACAGGAAGTCACCCAAGGGATGTCAATTTCTTATCCCTCTACATGGGTTGGATTTTCCAAAATCATAATTTGCAGAAGACCAGCACTTATGGTGGAATGTATATTATAAGGCAGCCACACTGGGGCAGGGTCCTTCCCCTCTCCCCACTCACGGCTTTGGCCCTTTCACAGATTAGAACCTGAGTTAGAGGATTGCAGAAGACGAGGTGGGAGGGCAGGGAAGATGCCTGTCAGGTTTTTAGCACAGTTTATTTCACTGGGATTTTGAAACATTTCTGTTTGAACACAAAGCCTGTTCTAGTCTTGGCAGGACACATTCTGGGGGTGGGGGTGGAGGAAGATGTGGTAATGTAACCGGTTAGTCAGTGTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATAAATATTTGTTAAGCTGTTTCACCTTTGTTTTGAAATCCcGTGTCCTTCCCTTTTAAGCAGAAAATGTGACACTTGTGAAAAAGCTTGTAAGACAGCACTTCCCTTTTTTTCCCTTTAAACCTTTAAATGGCAAATCTAGGTAATTAAAGTTGTGAATTTTTATTTTTGCTTTGTTTTTAATGAACACTTGTCTTTCAGAATAGGATTGTGTGATAATGTCTAAATGGCAAAAACAAAACGTGATTTTGCACAATTAACAAAACTACTGCAAGAAAAATAAAACATTTCTTGGTAACA
>NM_032569.4
GTCGGCGGTGGTTGGGTGGTAAGATGGCGGCTGTGAGTCTGCGGCTCGGCGACTTGGTGTGGGGGAAACTCGGCCGATATCCTCCTTGGCCAGGAAAGATTGTTAATCCACCAAAGGACTTGAAGAAACCTCGCGGAAAGAAATGCTTCTTTGTGAAATTTTTTGGAACAGAAGATCATGCCTGGATCAAAGTGGAACAGCTGAAGCCATATCATGCTCATAAAGAGGAAATGATAAAAATTAACAAGGGTAAACGATTCCAGCAAGCGGTAGATGCTGTCGAAGAGTTCCTCAGGAGAGCCAAAGGGAAAGACCAGACGTCATCCCACAATTCTTCTGATGACAAGAATCGACGTAATTCCAGTGAGGAGAGAAGTAGGCCAAACTCAGGTGATGAGAAGCGCAAACTTAGCCTGTCTGAAGGGAAGGTGAAGAAGAACATGGGAGAAGGAAAGAAGAGGGTGTCTTCAGGCTCTTCAGAGAGAGGCTCCAAATCCCCTCTGAAAAGAGCCCAAGAGCAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGATCTCACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAAATGGCAGCCAACCGCAAGCGAGCCTGTTAAAGATGCAGATCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAGCCAGCTGTCTGTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAGGAAACTGGCTCCACCTCCATCCAGGCAGCTGACAGCACAGCCGTGAATGGCAGCATCACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGTCTCATGGGAAGTGGAATCGTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGCACTGCAGAGAAATGTGATTTGTTCATCCAGGAGGGGGCCCGTCTGGGAAGAACCCCCGCTGAAGTCGTCTCAACCTGCGACATCACTTTCGCCTGCGTGTCGGATCCCAAGGCGGCCAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTGCTACGTGGACATGTCAACAGTGGACGCTGACACCGTCACTGAGCTGGCCCAGGTGATTGTGTCCAGGGGGGGGCGCTTTCTGGAAGCCCCCGTCTCAGGGAATCAGCAGCTGTCTAATGACGGGATGTTGGTGATCTTAGCGGCTGGAGACAGGGGCTTATATGAGGACTGCAGCAGCTGCTTCCAGGCGATGGGGAAGACCTCCTTCTTCCTAGGTGAAGTGGGCAATGCAGCCAAGATGATGCTGATCGTGAACATGGTCCAAGGGAGCTTCATGGCCACTATTGCCGAGGGGCTGACCCTGGCCCAGGTGACAGGCCAGTCCCAGCAGACACTCTTGGACATCCTCAATCAGGGACAGTTGGCCAGCATCTTCCTGGACCAGAAGTGCCAAAATATCCTGCAAGGAAACTTTAAGCCTGATTTCTACCTGAAATACATTCAGAAGGATCTCCGCTTAGCCATTGCGCTGGGTGATGCGGTCAACCATCCGACTCCCATGGCAGCTGCAGCAAATGAGGTGTACAAAAGAGCCAAGGCGCTGGACCAGTCTGACAACGATATGTCCGCCGTGTACCGAGCCTACATACACTAAGCTGTCGACACCCCGCCCTCACCCCTCCAATCCCCCCTCTGACCCCCTCTTCCTCACATGGGGTCGGGGGCCTGGGAGTTCATTCTGGACCAGCCCACCTATCTCCATTTCCTTTTATACAGACTTTGAGACTTGCCATCAGCACAGCACACAGCAGCACCCTTCCCCTGAGGCCGGTGGGGAGGGGACAAGTGTCAGCAGGATTGGCGTGTGGGAAAGCTCTTGAGCTGGGCACTGGCCCCCCGGACGAGGTGGCTGTGTGTTcacacacacacacacacacacacacacacacacacacaGGCTCTCGCCCCAGGATAGAAGCTGCCCAGAAACTGCTGCCTGGCTTTTTTTCTTCCGAGCTTGTCTTATCTCAAACCCCTTCCAGTCAAGGAACTAGAATCAGCAACGAGAGTTGGAAGCCTTCCCACAGCTTCCCCCAGAGCGAAGAGGCTGTAGTCATGTCCCCATCCCCCACTGGATTCCCTACAAGGAGAGGCCTTGGGCCCAGATGAGCCAGTACAGACTCCAGACAGAGGGGCCCTTGGGGCCCTCCAACCTCAGGTGATGAGCTGAGAAAGATGTTCACGTCTAAGCGTCCAGTGTGCACCCAGCGCTCCATAGACGCCTTTGTGAACTGAAAAGAGACTGGCAGAGTCCCGAGAAGATGGGGCCCTGGCTTTCCAGGGAGTGCAGCAAGCAGCCGGCCTGCAGGTGAGCATGGAGGCCCGGCCCTCACCGCCTCGAAGCCATGCCCCAGATGCCACTGCCACAGCGGGCGCTCGCTCCTCCCTAGGCTGTTTTAGTATTTGGATTTGCATTCCATCCCTTGGGAGGGAGTCCTCAGGGCCACTAGTGATGAGCCAAGAGGAGTGGGGGTTGGGGGCGCTCCTTTCTGTTTCCGTTAGGCCACAGACTCTTCACCTGGCTCTGAAGAGCCACTCTTACCTCGGTCCCCTCCCAGTGGTCCCACCTTCTCCACCCTGCCCTGCCAAGTCCCCTGCATGCCCACCGCTCTCCATCCTCCCTCCTCTCCCTCTTCCTCCCGTGGAGACAGTATTTCTTTCTGTCTGTCCCTTTGGCCCAGACCCAGCCTGACCAACGATGAGCATTTCTTAGGCTCAGCTCTTGATACGGAAACGAGTGTCTTCACTCCAGCCAGCATCATGGTCTTCGGTGCTTCCCGGGCCCGGGGTCTGTCGGGAGGGAAGAGAACTGGGCCTGACCTACCTGAACTGACTGGCCCTCCGAGGTGGGTCTGGGACATCCTAGAGGCCCTACATTTGTCCTTGGATAGGGGACCGGGGGGGGCTTGGAATGTTGCAAAAAAAAAAGTTACCCAAGGGATGTCAGTTTTTTATCCCTCTGCATGGGTTGGATTTTCCAAAATCATAATTTGCAGAAGGAAGGCCAGCATTTACGATGCAATATGTAATTATATATAGGGTGGCCACACTAGGGCGGGGTCCTTCCCCCCTCACAGCTTTGGCCCCTTTCAGAGATTAGAAACTGGGTTAGAGGATTGCAGAAGACGAGTGGGGGGAGGGCAGGGAAGATGCCTGTCGGGTTTTTAGCACAGTTCATTTCACTGGGATTTTGAAGCATTTCTGTCTGAACACAAAGCCTGTTCTAGTCCTGGCGGAACACACTGGGGGTGGGGGCGGGGGAAGATGCGGTAATGAAACCGGTTAGTCAATTTTGTCTTAATATTGTTGACAATTCTGTAAAGTTCCTTTTTATGAATATTTCTGTTTAAGCTATTTCACCTTTCTTTTGAAATCCTTCCCTTTTAAGGAGAAAATGTGACACTTGTGAAAAAGCTTGTAAGAAAGCCCCTCCCTTTTTTCTTTAAACCTTTAAATGACAAATCTAGGTAATTAAGGTTGTGAATTTTTATTTTTGCTTTGTTTTTAATGAACATTTGTCTTTCAGAATAGGATTGTGTGATAATGTTTAAATGGCAAAAACAAAACATGATTTTGTGCAATTAACAAAGCTACTGCAAGAAAAATAAAACACTTCTTGGTAACACA

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