Retrocopy Name | GOLGA4P1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr2:117179879-117181169 UCSC | |
Coordinates (T2T) | chr2:117611609-117612901 UCSC | |
Coordinates (hg19) | chr2:117937455-117938745 UCSC | |
Strand | - | |
Parental Sequence | NM_002078.5 | |
Parental seq. overlap | 826 bp | |
Parental seq. overlap (%) | 10.5% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | GOLGA4P1, located on chr2:117179879-117181169, is a retrocopy of the parental gene GOLGA4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | GOLGA4 |
Full Name | golgin A4 |
Also known as | CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 |
Coordinate | chr3:37243269-37366879 |
Strand | + |
Gene summary | The Golgi apparatus, which participates in glycosylation and transport of proteins and lipids in the secretory pathway, consists of a series of stacked cisternae (flattened membrane sacs). Interactions between the Golgi and microtubules are thought to be important for the reorganization of the Golgi after it fragments during mitosis. This gene encodes one of the golgins, a family of proteins localized to the Golgi. This protein has been postulated to play a role in Rab6-regulated membrane-tethering events in the Golgi apparatus. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene. [provided by RefSeq, Feb 2010] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | GOLGA4P1 |
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Bonobo | Pan paniscus | GOLGA4P1 |
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Gorilla | Gorilla gorilla | GOLGA4P1 |
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Orangutan | Pongo abelii | GOLGA4P1 |
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Green monkey | Chlorocebus sabaeus | GOLGA4P1 |
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Rhesus | Macaca mulatta | GOLGA4P1 |
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Baboon | Papio anubis | GOLGA4P1 |
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Marmoset | Callithrix jacchus | GOLGA4P1 |
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Gibbon | Nomascus leucogenys | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>GOLGA4P1 |
ATATTTTAGGGTGATTTTTTAAAAAGACTTGTGCAATACATTTTGAGGCGAAATTTAGTGATTTTTTTTTCTGTTAAATTAGAGCATTTAATTGACTATTTTATTCAGGTTGATTTGTTGTATATTTGCTGAAGACCAGTTTTTTAAGCTAAGACATGTAATAAATCTCAAATGACAGTACCTCATTGTTTACTTAGCTTTTGTACTTATATTTTTTGGAGGAAAAAACACTGTCATAAATTGTAAATAGCCAATGCATAACTGTATTGTATGCAAGGCCGTGACTGTTGGTGGTGTCATCGCTGAGAAAGAGATAAATAAAGTTTATTTACTACGTTTGAAGAAATATGAAAATAATGTAGATGCAACAACTGTGGGGACACCTTACAAAGGTGGCAATTTCTACCACACCGATGTCTCAGTCTTTGGAGAACCCACCAGGTTTGAGTATTTGCAAAAAGTGCTTTTTGAGTATATGATAGATCGTGAGACTAAGACCATAGCAAAGGTTATAACCACTATACTGAAGTTCCCTGATGATCAGACTCAGAAAATTTTGTAAAAAGAAGATGCTCAGCTAATGTTTACTTCACCTCGTAGTGGTATCTTCTAAGTCAACCATCAGCCTGTGCTTCATTAGCATGTGTCATGGCTCCGATCTTCATCTTAAAGAAGAGTGACATTGGATGACTGCTGCTGGGAAAATGGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTTAGGGCCCCTCGTGTTGCCAAAAGACCAAGAAAAATCTGGCCCACAGATATGTTGCAGACTCCTTTTAAAATAGATTTCATCAGTGGAGAAATGGTGATAGTTTTTTTCTTCAGTTTTCTGTTTAGAAGAATTTTATGTTGTTTAAAAGATATTTTGAATGCCTTAACCTTCTTTATAGGCTTACATAATATTCTTTTCTTCCATTCTTTCTAAAAAACTGCTTACCTTTCCTATTTATTTTAGGGTAAt |
>NM_002078.5 |
AGTTCACCTGCTGCCGTTGTCGTCGCCGCCGCGGCTCCCGGGGCTGGATGGGGGGCCGAGGCCAGCCAGTGGCACCCGGAAGAAAGAGACGCGGCGGCGGCGACGCCGACACCCTCAGGACGAGTGTCCGGACTTGCCCACAGCCTCAAGGAGGAGACGGCGAGGCCCGGCCCCCGCTGTCCCTGGTGTAAAGAAGTCGCCGTAGCCGTCGCGGCCGGGACTCCCCGGGCTCTCGCCCTTCAGGTTTCGTTGACACTCAGGACCGTACGTACGCTGCGCCATGTTCAAGAAACTGAAGCAAAAGATcagcgaggagcagcagcagctccagcagGCGCTGGCTCCTGCTCAGGCGTCCTCCAATTCTTCAACACCAACAAGAATGAGGAGCAGGACATCTTCATTTACAGAGCAACTTGATGAAGGTACACCCAATAGAGAGTCAGGTGACACACAGTCTTTTGCACAGAAGCTCCAGCTCCGGGTGCCCTCCGTGGAGTCTTTGTTTCGAAGTCCGATAAAGGAATCTCTATTCCGGTCTTCTTCTAAAGAGTCTTTGGTACGAACATCTTCCAGAGAATCCCTGAATCGACTTGACCTGGACAGTTCTACTGCCAGTTTTGATCCACCCTCTGATATGGATAGCGAGGCTGAAGACTTGGTAGGGAATTCAGACAGTCTCAACAAAGAACAGTTGATTCAGCGGTTGCGAAGAATGGAACGAAGCTTAAGTAGCTACAGGGGAAAATATTCTGAGCTTGTTACAGCTTATCAGATGCTTCAGAGAGAGAAGAAAAAGCTACAAGGTATATTAAGTCAGAGTCAGGATAAATCACTTCGGAGAATAGCAGAATTAAGAGAGGAGCTCCAAATGGACCAGCAGGCAAAGAAACATCTGCAAGAGGAGTTTGATGCATCTTTAGAGGAGAAAGATCAGTATATCAGTGTTCTCCAAACTCAGGTTTCTCTACTGAAACAACGATTACGAAATGGCCCGATGAATGTTGATGTACTGAAACCACTTCCTCAGCTGGAACCACAGGCTGAAGTCTTCACTAAAGAAGAGAATCCAGAAAGTGATGGAGAGCCAGTAGTGGAAGATGGAACTTCTGTAAAAACACTGGAAACACTCCAGCAAAGAGTGAAGCGTCAAGAGAACCTACTTAAGCGTTGTAAGGAAACAATTCAGTCACATAAGGAACAATGTACACTATTAACTAGTGAAAAAGAAGCTCTGCAAGAACAACTGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGACCTTCATATGGCCGAGAAGACTAAACTTATCACTCAGTTGCGTGATGCAAAGAACTTAATTGAACAGCTTGAACAAGATAAGGGAATGGTAATCGCAGAGACAAAACGTCAGATGCATGAAACCCTGGAAATGAAAGAAGAAGAAATTGCTCAACTCCGTAGTCGCATCAAACAGATGACTACCCAGGGAGAGGAATTACGGGAACAGAAAGAAAAGTCCGAAAGAGCTGCTTTTGAGGAACTTGAAAAAGCTTTGAGTACAGCCCAAAAAACAGAGGAAGCACGGAGAAAACTGAAGGCAGAAATGGATGAACAAATAAAAACTATCGAAAAAACAAGTGAGGAGGAACGCATCAGTCTTCAACAGGAATTAAGTCGGGTGAAACAGGAGGTTGTTGATGTAATGAAAAAATCCTCAGAAGAACAAATTGCTAAGCTACAGAAGCTTCATGAAAAGGAGCTGGCCAGAAAAGAGCAGGAACTGACCAAGAAGCTTCAGACCCGAGAAAGGGAATTTCAGGAACAAATGAAAGTAGCTCTTGAAAAGAGTCAATCAGAATATTTGAAGATCAGCCAAGAAAAAGAACAGCAAGAATCTTTGGCCCTAGAAGAGTTAGAGTTGCAGAAAAAAGCAATCCTCACAGAAAGTGAAAATAAACTTCGGGACCTTCAGCAAGAAGCAGAGACTTACAGAACTAGAATTCTTGAATTGGAAAGTTCTTTGGAAAAAAGCTTACAAGAAAACAAAAATCAGTCAAAAGATTTGGCTGTTCATCTGGAAGCTGAAAAAAATAAGCACAATAAGGAGATTACAGTCATGGTTGAAAAACACAAGACAGAATTGGAAAGCCTTAAGCATCAGCAGGATGCCCTTTGGACTGAAAAACTCCAAGTCTTAAAGCAACAATATCAGACTGAAATGGAAAAACTTAGGGAAAAGTGTGAACAAGAAAAAGAAACATTGTTGAAAGACAAAGAGATTATCTTCCAGGCCCACATAGAAGAAATGAATGAAAAGACTTTAGAAAAGCTTGATGTGAAGCAAACAGAACTAGAATCATTATCTTCTGAACTGTCAGAAGTATTAAAAGCCCGTCACAAACTAGAAGAGGAACTTTCTGTTCTGAAAGATCAAACAGATAAAATGAAGCAGGAATTAGAGGCCAAGATGGATGAACAGAAAAATCATCACCAGCAGCAAGTTGACAGTATCATTAAAGAACACGAGGTATCTATCCAGAGGACTGAGAAGGCATTAAAAGATCAAATTAATCAACTTGAGCTTCTCTTGAAGGAAAGGGACAAGCATTTGAAAGAGCATCAGGCTCATGTAGAAAATTTAGAGGCAGATATTAAAAGGTCTGAAGGGGAACTCCAGCAGGCATCTGCTAAGCTGGACGTTTTTCAGTCTTACCAGAGTGCCACACATGAGCAGACAAAAGCATATGAGGAACAGTTGGCCCAATTGCAGCAGAAGTTGTTGGATTTGGAAACAGAAAGAATTCTTCTTACCAAACAGGTTGCTGAAGTTGAAGCACAAAAGAAAGATGTTTGTACTGAGTTAGATGCTCACAAAATCCAGGTGCAGGACTTAATGCAGCAACTTGAAAAACAAAATAGTGAAATGGAGCAAAAAGTAAAATCTTTAACCCAAGTCTATGAGTCCAAACTTGAAGATGGTAACAAAGAACAGGAACAGACAAAGCAAATCTTGGTGGAAAAGGAAAATATGATTTTACAAATGAGAGAAGGACAGAAGAAAGAAATTGAGATACTCACACAGAAATTGTCAGCCAAGGAGGACAGTATTCATATTTTGAATGAGGAATATGAAACCAAATTTAAAAACCAAGAAAAAAAGATGGAAAAAGTTAAGCAGAAAGCAAAGGAGATGCAAGAAACGTTAAAGAAAAAATTACTGGATCAGGAAGCCAAACTTAAGAAAGAGCTTGAAAATACTGCTCTAGAGCTTAGTCAGAAAGAAAAACAGTTTAATGCCAAAATGCTGGAAATGGCACAGGCTAACTCAGCTGGAATCAGTGATGCAGTGTCAAGACTGGAAACAAACCAAAAAGAACAAATAGAAAGTCTTACTGAGGTTCATCGACGAGAACTCAATGATGTCATATCAATCTGGGAAAAGAAACTTAATCAGCAAGCTGAAGAACTTCAGGAAATACATGAAATCCAATTACAGGAAAAAGAACAAGAGGTAGCAGAACTGAAACAAAAGATCCTCCTATTTGGGTGTGAAAAAGAAGAGATGAACAAGGAAATAACATGGCTGAAGGAAGAAGGTGTTAAGCAGGATACAACATTAAATGAATTACAGGAACAGTTAAAGCAGAAGTCTGCCCATGTGAATTCTCTTGCACAAGATGAAACTAAACTGAAAGCTCATCTTGAAAAGCTAGAGGTTGACTTGAATAAGTCTCTGAAGGAAAATACTTTTCTTCAAGAGCAGCTAGTTGAACTGAAGATGCTGGCAGAAGAAGATAAGCGGAAGGTTTCTGAGTTGACTAGCAAGTTGAAAACCACAGATGAAGAATTCCAGAGTTTGAAATCTTCACATGAAAAAAGTAACAAAAGCCTAGAGGACAAGAGCTTGGAATTTAAAAAACTGTCTGAGGAACTAGCGATTCAGCTAGATATTTGCTGTAAGAAAACCGAAGCCTTATTAGAAGCTAAAACAAATGAGCTAATCAACATTAGTAGTAGTAAAACTAATGCCATTCTTTCTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCACAGTTTCTGAATTAGAAGCACAACTTAGACAGTTGACAGAGGAGCAAAATACACTAAATATTTCTTTTCAACAGGCTACTCATCAGTTAGAAGAAAAAGAAAATCAAATTAAGAGCATGAAGGCTGATATTGAAAGTCTTGTAACAGAAAAAGAAGCCTTACAGAAGGAAGGAGGCAATCAGCAACAGGCTGCTTCTGAAAAGGAGTCTTGTATAACACAGTTGAAGAAAGAGTTATCTGAAAACATCAATGCTGTCACATTGATGAAAGAAGAGCTTAAAGAAAAAAAAGTTGAGATTAGCAGTCTTAGTAAACAACTAACTGATTTGAATGTTCAGCTTCAAAATAGCATCAGCCTATCCGAAAAAGAAGCAGCCATTTCATCACTAAGAAAGCAGTATGATGAAGAAAAATGTGAATTGCTGGATCAGGTGCAAGATTTATCTTTTAAAGTTGACACTCTGAGTAAAGAGAAAATTTCTGCTCTTGAGCAGGTAGATGACTGGTCCAATAAATTCTCAGAATGGAAGAAGAAAGCACAGTCAAGATTTACACAGCATCAAAACACTGTTAAAGAATTGCAGATCCAGCTTGAGTTAAAATCAAAGGAAGCTTATGAAAAGGATGAGCAGATAAATTTATTGAAGGAAGAGCTTGATCAGCAAAATAAAAGATTTGATTGTTTAAAGGGTGAAATGGAAGACGACAAGAGCAAGATGGAGAAAAAGGAGTCTAATTTAGAAACAGAGTTAAAGTCTCAAACAGCAAGAATTATGGAATTAGAGGACCATATTACCCAGAAAACTATTGAAATAGAGTCCTTAAATGAAGTTCTTAAAAATTACAATCAACAAAAGGATATTGAACACAAAGAATTGGTTCAGAAACTTCAACATTTTCAAGAGTTAGGAGAAGAAAAGGACAACAGGGTTAAAGAAGCTGAAGAAAAAATCTTAACACTTGAAAACCAAGTTTATTCCATGAAAGCTGAACTTGAAACTAAGAAGAAAGAATTAGAACATGTGAATTTAAGTGTGAAAAGCAAAGAGGAGGAGTTAAAGGCATTGGAAGATAGGCTTGAGTCAGAAAGTGCTGCAAAATTAGCAGAGTTGAAGAGAAAAGCTGAACAAAAAATTGCTGCCATTAAGAAGCAGTTGTTATCTCAAATGGAAGAGAAAGAAGAACAGTATAAAAAAGGTACAGAAAGCCATTTGAGTGAGCTAAATACAAAATTGCAGGAAAGAGAAAGGGAAGTTCACATCTTGGAAGAAAAACTTAAGTCAGTGGAAAGTTCACAGTCAGAAACATTAATTGTACCCAGATCAGCAAAAAATGTGGCAGCATATACTGAACAAGAAGAAGCAGATTCCCAAGGCTGTGTGCAGAAGACATATGAAGAAAAAATCAGTGTTTTACAAAGAAACTTAACTGAAAAAGAAAAGCTATTGCAGAGGGTAGGGCAGGAAAAAGAAGAGACAGTTTCTTCTCATTTTGAAATGCGATGCCAATACCAGGAGCGCTTAATAAAGCTAGAACATGCTGAGGCAAAGCAACATGAAGATCAAAGTATGATAGGTCATCTTCAAGAGGAGCTTGAAGAAAAAAACAAGAAATATTCCTTGATAGTAGCCCAGCATGTGGAAAAAGAAGGAGGTAAAAATAACATACAGGCAAAGCAAAACTTGGAAAATGTGTTTGACGACGTCCAGAAAACCCTCCAGGAGAAGGAACTAACCTGTCAGATTTTGGAGCAAAAGATAAAAGAGCTGGATTCCTGCTTAGTAAGACAGAAAGAAGTACATAGAGTTGAAATGGAAGAGTTGACCTCAAAATATGAAAAATTACAGGCTTTACAACAGATGGATGGAAGAAATAAACCCACAGAACTTTTGGAAGAAAACACTGAAGAAAAGTCCAAATCACATTTGGTCCAACCCAAATTGCTTAGTAACATGGAAGCCCAGCACAATGATCTGGAGTTTAAATTAGCCGGGGCAGAACGGGAGAAACAGAAACTGGGCAAGGAGATTGTTAGATTGCAGAAAGACCTTCGAATGTTGAGAAAGGAGCATCAGCAAGAATTGGAAATACTAAAGAAAGAATATGATCAAGAAAGGGAAGAGAAAATCAAACAGGAGCAGGAAGATCTTGAACTGAAGCACAATTCCACATTAAAACAGCTGATGAGGGAGTTTAATACACAGCTGGCACAAAAGGAACAAGAGCTGGAAATGACCATAAAAGAAACTATCAATAAGGCCCAGGAGGTGGAGGCTGAACTTTTAGAAAGCCATCAAGAAGAGACAAATCAGTTACTTAAAAAAATTGCTGAGAAAGATGATGATCTAAAACGAACAGCCAAAAGATATGAAGAAATCCTTGATGCTCGTGAAGAAGAAATGACTGCAAAAGTAAGGGACCTGCAGACTCAACTTGAGGAGCTGCAGAAGAAATACCAGCAAAAGCTAGAGCAGGAGGAGAACCCTGGCAATGATAATGTAACAATTATGGAGCTACAGACACAGCTAGCACAGAAGACGACTTTAATCAGTGATTCGAAATTGAAAGAGCAAGAGTTCAGAGAACAGATTCACAATTTAGAAGACCGTTTGAAGAAATATGAAAAGAATGTATATGCAACAACTGTGGGGACACCTTACAAAGGTGGCAATTTGTACCATACGGATGTCTCACTCTTTGGAGAACCTACCGAATTTGAGTATTTGCGAAAAGTGCTTTTTGAGTATATGATGGGTCGTGAGACTAAGACCATGGCAAAAGTTATAACCACCGTACTGAAGTTCCCTGATGATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTGATGTTTACTTCACCTCGCAGTGGTATCTTCTGAGTAAACCATCAGTCTGTGCTTAGTTAACATGTGTCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTGCTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTCAGGGCCCCTCATGTAGCCAAAAGACCAAGAAAAATCTGGCCCACAGATAAGTTGCAGACTGCCTTTAAAATAGATTTTATCAGTGGAGAAATGGTGATAGTTTTTTCTTCAGTTTTCTCTTGGGAAGAGTTTTATGTTGTTTAAAAGATATTTTGATAACTTAACCTGCTTTATGGGCTTACATAATATTCCTTTCATCCATTCTTTTTAAAGAACGGCTTACCTTTCCTATTTATTTTTAGGGTGATTTTTTAAAAAGACTTGTGCAATACATTTTGAGGTGAAACTTAGTGGATTTTTTCTGATAAATTAGAGCATTTAATTGACTATTTTATTCAGGTTGATCTGTTGAATATTTGCTAAAGACCAGTTCTTTAAGCTAAGACATGTAAAAAATCCCAAATGGCAGTACCTCATTGTTTACTTAGCTTTTGTACTTATATTTTTCAGAGGAAAAAACACTACTGTAAATTGTGAATAGCCAATACATAACTGTATTGTATGCAAATCTGTGATTGTTGGCAGTGTCATCTCTGAGAAACAGATAAATAAAGTTTATTTACTATATAACATTTGTTTATTGTACTTGTTCCTCAGTTGAAATCTATTTTAAAATGTTTAAGAATGCATATTCTATTTGGATGAATTTAGTGAGGAATTATTTGTCAATATAACTAAATGCTGAGCATTTGAAAAGAAT 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