Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name PSMD4P1
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr21:36485869-36487432  UCSC
Coordinates (T2T) chr21:34868470-34870033  UCSC
Coordinates (hg19) chr21:37858167-37859730  UCSC
Strand -
Parental Sequence NM_001330692.2
Parental seq. overlap 736 bp
Parental seq. overlap (%) 43.6%
Genomic Region Intragenic (CLDN14)
Retrocopy Summary PSMD4P1, located on chr21:36485869-36487432, is a retrocopy of the parental gene PSMD4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PSMD4
Full Name proteasome 26S subunit ubiquitin receptor, non-ATPase 4
Also known as AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5
Coordinate chr1:151254734-151267479
Strand +
Gene summary The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes one of the non-ATPase subunits of the 19S regulator lid. Pseudogenes have been identified on chromosomes 10 and 21. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PSMD4P2
Bonobo Pan paniscus PSMD4P3
Gorilla Gorilla gorilla PSMD4P2
Orangutan Pongo abelii PSMD4P2
Gibbon Nomascus leucogenys MRPS5P3
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PSMD4P1
CTCTGCTGCTGAGGCCAGGATTGCTACAACTGGGACTGAAGGCTCAGACGAGGTCCTGCTGAAGATGACCATTAGCCAACAAGAGTTTGGCCATACCGGACTTCCTGACCTAAGGAAGAGGGGATTGCTTATGTCATGAAGATGTCCCTGCAGGAGCAGAGTTTGGCCAGGCGGAATCAGTAGACATTGATGCCAGCTCAGCCATGGACACTTGCCAGCCAGCCAAGGAGGAGGATGATTACGACGTGATGCAGGATCCTGAGTTCCTTCAGAGTGTCCTGGAGAACCTCCCAGGTGTGGATCCCAACAATGAAGCCATTTGAAACGCTGTGGGCTCCCTGGCCTGCCAGGCCACCAAGGATGGCAAGAAGGACAAGAAGGAGGAAGACAAGAAGTGAGACTGGAGGGAAAGGGTAGCTGAGCCTGCTCAGGGGACTGCATGGGACGCAGAGAATATAGGGTTAGATGTGTGTTATCTGTAACCATTACAGCCTAAATAAAGCTTGGCAACATCCACAGCAACCCTGAGAACAACATGGCCCTCATCACACTGGCTAATGACTGTGAAGTGCTGACCACACTCACTCTAGACACCGGCCGCATCCTGTCCAAGCTACACACCGTCCAACCCAAGGGCAAGATCACCTTCTACACTGGCATCCACATGGCCCATCTGGCTCTGAAGCGCTGACGGGGCAAGAATCACAAGACGCATATCATTGCCTTCGTGGGAAGCCCAAAGGCAATGAGAAGGATCTGGTGAAACTGGCTAAATTCCTCAAGAAGGAGAAAGTAAATGTTGACATGATAAATTTGGGGGAAGAGGAGGTGAACAGAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATGGAAGCGGTTCTCATCTGGTGGCAGTGCCTCCTGGGCCCAGCTTGGCTGATGCTCTCATCAGTTCTCCGATTTTGGCTGGGGAAGGGGGTGCCATGCTGGGTCTCGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCCTCAGCTGGCCTTGGCCCTCGGGTTTCTATGGGGGAGGGAGGAGGGTGGCAGGATGGTGTTGGAAAGCGCTATGGTGTGTGTGGACAACAGTGAGTATGTGCAGAATGAGGACTTCTTCCCCACCCAGCTGCAGGCCCAGCAAGACGCTGTCAACATAGTATGTCATTCAAAACCCACAACAg
>NM_001330692.2
GTTGTTAGGCCGTCCCGGAGACCCGGTCGGGAGGGAGGAAGGTGGCAAGATGGTGTTGGAAAGCACTATGGTGTGTGTGGACAACAGTGAGTATATGCGGAATGGAGACTTCTTACCCACCAGGCTGCAGGCCCAGCAGGATGCTGTCAACATAGTTTGTCATTCAAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTTATCACACTGGCTAATGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCCGTATCCTGTCCAAGCTACATACTGTCCAACCCAAGGGCAAGATCACCTTCTGCACGGGCATCCGCGTGGCCCATCTGGCTCTGAAGCACCGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGTGGGAAGCCCAGTGGAGGACAATGAGAAGGATCTGGTGAAACTGGCTAAACGCCTCAAGAAGGAGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCCAGTTTGGCTGATGCTCTCATCAGTTCTCCGATTTTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCCTGAGCTGGCCTTGGCCCTTCGTGTATCTATGGAAGAgcagcggcagcggcaggaggaggaggcccggcgggcagctgcagcTTCTGCTGCTGAGGCCGGGATTGCTACGACTGGGACTGAAGGTGAAAGAGACTCAGACGATGCCCTGCTGAAGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTTCCTGACCTAAGCAGTATGACTGAGGAAGAGCAGATTGCTTATGCCATGCAGATGTCCCTGCAGGGAGCAGAGTTTGGCCAGGCGGAATCAGCAGACATTGATGCCAGCTCAGCTATGGACACATCTGAGCCAGCCAAGGAGGAGGATGATTACGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCCTAGAGAACCTCCCAGGTGTGGATCCCAACAATGAAGCCATTCGAAATGCTATGGGCTCCCTGGCCTCCCAGGCCACCAAGGACGGCAAGAAGGACAAGAAGGAGGAAGACAAGAAGTGAGACTGGAGGGAAAGGGTAGCTGAGTCTGCTTAGGGGACTGCATGGGAAGCACGGAATATAGGGTTAGATGTGTGTTATCTGTAACCATTACAGCCTAAATAAAGCTTGGCAACTTTT

Publications

PMID - Link Title