Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YY1P2
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:138897579-138898099  UCSC
Coordinates (T2T) chr2:139343288-139343807  UCSC
Coordinates (hg19) chr2:139655149-139655669  UCSC
Strand +
Parental Sequence NM_003403.5
Parental seq. overlap 459 bp
Parental seq. overlap (%) 7%
Genomic Region Intergenic
Retrocopy Summary YY1P2, located on chr2:138897579-138898099, is a retrocopy of the parental gene YY1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YY1
Full Name YY1 transcription factor
Also known as DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1
Coordinate chr14:100239144-100282788
Strand +
Gene summary YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes YY1P1
Bonobo Pan paniscus YY1P1
Gorilla Gorilla gorilla YY1P1
Orangutan Pongo abelii YY1P1
Gibbon Nomascus leucogenys YY1P3
Green monkey Chlorocebus sabaeus YY1P3
Crab-eating macaque Macaca fascicularis YY1P3
Rhesus Macaca mulatta YY1P3
Baboon Papio anubis YY1P2
Golden snub-nosed monkey Rhinopithecus roxellana YY1P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YY1P2
TGGGCAACAAGAAGTGGGGGCAGAAGCGAGTGCAGATCAGGAACCTGGAGGGCAAGTTATCTGTCTCCATGTGGTACTCGGATGAAAACAAAAAGACATTAACCATAAAATAGTGGTTGAGAAACAGATCACTGGAGAGAACTCACCTCCTGATTATTCAGAGTATATGACAGGAAAGAAACTTCCTCCTTGGAGGAATACCTGGCATTGACAGCTCAGATCCCAAAAAACTGCAGAATTCGCCAGAATGAAGCCAAGAAAAATTTAAAAGATGATGTTCCATGAACAATAGCTGGCCCTCGCCAAGGCTGCACAAAGATGTTCAAGGATAACTGACATGAGAAAACATCTGCACACTCACTGTCACGGAGTCCACTTCTGCACAGAATGTAGAAGAGCTTTTGTTGAGAGCTCAAAACAAAAACCACACAAACTGGTTCACACTGGAGAGAAGCTGTTTCAGTTCACGTTTGAAGACCGTGGGAAATGCTTTTCACTGGACTTCAATTTCCACACACATG
>NM_003403.5
ctccctctgccttccttccccacggccggccgcctcctcgcccgcccgcccgcAGCCGAGGAGCCGAGGCCGCCGCGGCCGTGGCGGCGGAGCCCTCAGCCATGGCCTCGGGCGACACCCTCTACATCGCCACGGACGGCTCGGAGATGCCGGCCGAGATCGTGGAGCTGCACGAGATCGAGGTGGAGACCATCCCGGTGGAGACCATCGAGACCACAGTGGTGGGCGAggaggaggaggaggacgacgacgacgaggacggcggcggtggcgaccacggcggcgggggcggccacgggcacgccgGccaccaccaccaccaccatcaccaccaccaccaccCGCCCATGATCGCTCTGCAGCCGCTGGTCACCGACGACCCGACCCAGGTGCACCACCACCAGGAGGTGATCCTGGTGCAGACGCGCGAGGAGGTGGTGGGCGGCGACGACTCGGACGGGCTGCGCGCCGAGGACGGCTTCGAGGATCAGATTCTCATCCCGGTGCCCGCGCCGGCCGGCGGCGACGACGACTACATTGAACAAACGCTGGTCACCGTggcggcggccggcaagagcggcggcggcggctcgtcgtcgtcgggaggcggccgcgtcaagaagggcggcggcaagaagagcggcaagaagagttacctcagcggcggggccggcgcggcgggcggcggcggcgccgACCCGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAGATGAAAAAAAAGATATTGACCATGAGACAGTGGTTGAAGAACAGATCATTGGAGAGAACTCACCTCCTGATTATTCAGAATATATGACAGGAAAGAAACTTCCTCCTGGAGGAATACCTGGCATTGACCTCTCAGATCCCAAACAACTGGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAGATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGTGCACGTTCGAAGGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCAAAAACAACCAGTGAAAAGAAGAGAGAAGACCCTTCTCGACCACGGGAAGCATCTTCCAGAAGTGTGATTGGGAATAAATATGCCTCTCCTTTGTATATTATTTCTAGGAAGAATTTTAAAAATGAATCCTACACACCTAAGGGACATGTTTTGATAAAGTAGTAAAAATTAAAAAAAAAAAACTTTACTAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAAAACACAGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCAAAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAATATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTGTACACTTTTTTGGGGATATGCTTAGTAATGCTACGTGTGATTTTTCTGGAGGTTGATAACTTTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATTTTCCTGTAAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATTCTTTGATGTTAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATCAAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTTTTCCAAAAAAATACTGCCAGATGCTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGTTACAGAAAGTGGTGCTCAGTTGTAGAATGTATTGTACCTTTTAACACCTGATGTGTACATCCCATGTAACAGAAAGGGCAACAATAAAATAGCAATCCTAAAGCAAGAATATGGCAGAACAAGATCTGTAAGCACAGTCTTATTTTCTTTTGTTGTCCAGAATACTTATAATTCTTGAGCCTCCCAGAAATTGGAAGCTAAATAAAGCAACTCAAGTTTCCTTTATTTTGCACTCAATTACAGTGATTATTGATGAAAGCGATGCATGGATATTTTAATACTTCCTACATGTCCTGACTTCTGAAAGAGAGTAGGTAACAGGCATCCCGAGTTCAGGAACTACCTCAGAACACCCCAGGCCAGGTTGGTCATAGGCTGTGATTTTAGCCCCCGGCAAGTGTGAGTGAAGCATCTGTACCACCGCGCAGGCTGAGCGCCTGCGCAGGGTAAGGTGCCACCTGGCAGTGGGGCACACAGAGGGAAGACCAGGCCTGTCCATCAGCCGGCTGCCTTCAGAGGCAGCTCCAGCAGGACCTTGGCTTGTCTGACAGGAAATGCTTGTGGTCGTTGGTTATTTGGTTTGAGAGCCCTTGTTCCTCCATCTAGTGGAGTCCTTATTAAATGCTAGCAATGTGGCAATTGAGTGCCAGTAGCTTAATTTCATGTTTCTAAATGGACACTGGGTGCAAATCGGCAAGGTGATTAGATTATTAGAAAATTCTGCTCAATGAGTACCTCTCACATTGTAACCTCTTAAATGTACGATTATAATGTTGGATCTTAGGTCAAATAACAGACTTGAGAATACTTTATAAACTGCCATGATACAGCAAAATCTCATTTATTCAAAGTGCAAACATACTGTGTGTCTTTCTGTTTTGTGTATGCTTGACTGCAAGATAAATGACAAACTAGCTAATATCCGAGATTTATTTACAAATGGCCAGGGACCCCATCAGGTGAAACACATAGCCCATTGTCTTAGAGcttctccatcggtcctgtacaggaggattggtgacctactaacagtgaccctgtggctctgtggaattttgaagtgccttttgtgaatcatgaatgaaacatttaactTGAGACCCTTTAAAAAATTCATCCAGAATCTGTTACCCCTTGGGTAGTTTGATGGAACTGAGTTAAGCAGAAGACCCCAGCTGTTTTCTGGGTAAGCCAGGCTTTGCTGTATCTGGCAGTCAGGAGAGAGGTCAGCCCATGGTGGAGGTCTTCAGTGCCGAGGGCTCGGATGAGAACGTGTAGTTCTTTGACTTGGACCTGGGCAGCGTCTTCTATGGATGCCTGCCTTGTGAGCACCCACACCTTCCCTCCCCACTGTCGGGTTGAGTAGCCCCAGCGTGGCTGTGTTAGGAGTCCTTTGCCCAACATTGTGCTGCACTGGAGCCTGGCCCTGGCACTGTCCTCAGGACCCTGCCCAAGGGCCCACCGCAGAGCACACCTATGCTATGGGGAGCCCTGCTGGCAGCCCCGAGAGCCATGCCATGGCCTGCAGGAGCCAGGCTCCTGTGTGGATGAAGTCCCTCTTCCTCTGTGCCTTGATCCCTTGGGGGTGCCTTTGGTCATCTCTTCTGTCCTTTCCTGTCTCTGAAATAGTCATCACTCCCCTTGACTCTCTCTGTTCACGTCTTCTCAGTCTGCAGAGTTAACTTCTGTAAGGAGTTTAATCTGGGGTTCCAAGAAAACAAGTTCCTTGTTAACATAGCACTGACTTTGCAACAATAGAAAACTAACAAATGAGCAACAATATAAAGAGTAGAGGTAGTTCTCATTGGGTGTAACTTCAACCCATTCTGCTTGTGGTTAGAATTTATAATTTTGCTAACGATGTAATTTACTAAGGTTTGAAATGGTATTCTAACAGTGAGTCCATTGTCTTGAGGATTAATCTGATTTATAAGTAATACTGATAGACATATTTTCGTACATCTGAGCAGAAATAAATGCATGTTTCTAGCATATGTAATATAAAAACTCCAGAGGATAAGTTTACACTTAACAAGATGTTGTTTTCTATTTTTGAATTTCTTATTATTTCCCCCTTTTTGGTAGTGGAGTTGAGAGGGGGAGCATACTATTTGTATAAAGAACTGTCACCCCAGAGTGACATTTATTTTCCAAGATGACCCTGAACTCATGCTGTTGGTTTCATATGGTGTTTGTGTGCTTTGCCTAGATTCAAGGCCTGAGGATTTGAGGAAAATCGGGATTTTTTTTTTCCTATTTGGTTTTCATGTAAAAGTTCTAAATGTCACTTATTTTGCTAAATAAGACCCTTTCACAGGATAGTGTGCGCAATACCTGTCCGTGTTTCCAAGCAGAGTTCAAGTTCATGTCTTCACAAGTAGATGAGAGTCACTTCCAGTCGGGGGAAGCCCGCCTGAGCAGTGTTTTGAGAGTGCGTACATTGGAGGACTGCCCCACGTCCGTTTGCACTCTGCCTTGCAAAACTTACTGTGGAGACGTGTCCCAGACTGGTCTCAGACCAGAGTTTGTGGCACAGGAAAACCTGGCCCCCTAAAAAGAAGTTTTGGAATTGGAAGCCTGATAATTtcgggaggctgaggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcaagactccgtctcccaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAACCTGACAATTCTACCCACCTCCCCCCACCCCCGACTATAGGCAAAGAGAGTTGATCACTTCCAGGGTCTCTGACTTCTGTGACCTGGAAATCAGCCTGGCTTGGGAAATTCATGTTGTTGATCTTTAATTATTTAATTATTCTTTAATAATCCTTCTATTTTCTTGACATCTGACCCCCAGCAAGAGTAAGGATCCCAGAGGTCAAAACAGTGGTGAGAGCCAAGCTGCTCACAGACACCCACTTGATGCCACAGCCATGCCATGAGGCTTCCTCCCAGCTGCTCTGCTGGCTTGCTGAAGCCAGCTCTGAGTCACAGGGTTGCCTTGGACCCTCGGCTGTAGGGGGCACCTGTCTGGCTCCGGGCCCTTTGTCCTGGATACACTGACAGTAATGTGAGCGCAGCACTTCAGAGTTCAGGCCCAGCAGGTCCTGGCAAGTGCATTCCACCCGAACTTTTAACCCAAGCGGTGGGGAAGGAAGCCAAAACTCCAAGCTGCACTTTCTTGGGGTTCTGGCCATGCACTTCTTAGCCTTCTCTCTGACTTTACAGGACAAAAGGTACCCCACGCCTTCAGAATCATGCTTACCTGCACGGCAGCATCTGACTGGATGGCTGGCTAGGTCTCATCCACCCCAAATTACTGACCCTTGATTTATGTTGTTACTGCTCAGGTTATGCTCAGATGCCCTGGTTGCCTGAAGATGGTTTAAGTGCAGGCCCTTCAGACAAGTCACGTCAGGCAAGAGAGGGCTGGCCTCTGACCCACAAGAGGGCAGATTTGTGGCCAAGAGGCTTCCTGGCATCCACCCCCAGGCCCAAGGGATCAGTGTGGTGCCAGAGAGGATCTTTAAGCTGGGACTGTACTGAGGCTTGATGGGAAGTATGGGCAGCATGTACTTGACACGTTATCACCCAGTCCCCTTGTAAAATCTGGAATGGAGCGTTTAAGCTGAGCGTTAGCATCAGGTCAGCAGGCAAAGCAAACCTCCCACAAACTGGGTGCCGTAAGGTGGGAGGTGACACATGGAGAGCTTCGTCCTGGCCGAGCAGGCACCCAGCCCCATGTCCCCCGCCAGCATTCTGGATGTCAGAGGAGGGTGCGTGTGATGGCGTCACATTCATCTGAAGCACACTGATTGATTTTCCACAAGGTGGCAAGTTTGATCAAATTGACCGCTTTTCATGAGACACCCAGATGCTGTAAAAAAAAAAAACAGCACTGGGATGTGTTGAGGAGGGGGCAGTTtgctgtgctctgttctgtctgctgctctctctgGGGGCCGCACAATGTCCGCACACATCACGGAGGGGAGAAAGGCATCAGTACCAAACGGAACAACCTCTTTTTTCTACATTGTCCATACCCGGACATGTGAGGCTCTATTATCAACAGGTGGTGAGAAAAATTATGTTTTTATTCGCTTTCTGGTAACTTCTGTAGGCCCTGGCTCAAGGACTTAGCATTTCGTCTCATGTACATCTTTTTCTTAAGTGTTCTTTGCCATTTCTGGAATTGTCCTTGGTTTTTCCTTAGCTCATAGGTCATAGATGCAGAAATATAGTATTTAAGGCATCCGCATCCAGCATCAGATGGCTTTGCATCCAGAAAAACATTGATAACTCAGTTTGAAGCACCAAGCATGTGTAATATGGCTCTATACAATATAATAAATGCATAATGTTAAGCTTT

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