Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name COPRSP1
Wait
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:140683227-140683916  UCSC
Coordinates (T2T) chr2:141129024-141129713  UCSC
Coordinates (hg19) chr2:141440796-141441485  UCSC
Strand -
Parental Sequence NM_018405.4
Parental seq. overlap 618 bp
Parental seq. overlap (%) 71.1%
Genomic Region Intragenic (LRP1B)
Retrocopy Summary COPRSP1, located on chr2:140683227-140683916, is a retrocopy of the parental gene COPRS. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name COPRS
Full Name coordinator of PRMT5 and differentiation stimulator
Also known as C17orf79|COPR5|HSA272196|TTP1
Coordinate chr17:31851871-31859244
Strand -
Gene summary Enables histone binding activity. Involved in histone H4-R3 methylation. Located in cytosol; nucleoplasm; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes COPRSP1
Bonobo Pan paniscus COPRSP1
Gorilla Gorilla gorilla COPRSP1
Orangutan Pongo abelii COPRSP1
Gibbon Nomascus leucogenys COPRSP1
Green monkey Chlorocebus sabaeus COPRSP1
Crab-eating macaque Macaca fascicularis COPRSP1
Rhesus Macaca mulatta COPRSP1
Baboon Papio anubis COPRSP1
Golden snub-nosed monkey Rhinopithecus roxellana COPRSP1
Marmoset Callithrix jacchus COPRSP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>COPRSP1
AGCCGCGGGCAGCCCGGCATGGACCCCTCAGTCTGCCAGGGCCCAGGCGCAGGGGGCCGCGGAGCTGTTTCGGGGTCGGCTGCTGCCTAGCGCATGGAAGGCATCCCCTAGCCCGGAGGCTGGCTTTGCTACAGCTGACCACTCCTGTCAGGAGAGAGAGACTGAGAAGGCTATGGATCGACTAGCCCGGGGAGCACAGAGTGTCTCTAATGACAGTCCAGCCCGGAGTGAAGGCACCCATTCTGAAGATTTGCTGTAAATGCGGAGGACTCGGATGGAATACCTGGGAGCTGAGAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCAATCTTTTTAATGAAGACTGGGACTTGGAGTTGAAAGCAGATCAAGGAAATCCATATGATGCTGACGACATCCAGGGGAGCGTTTCTCAAGATCTCAAACCTTGGGTCAGCTGTGCCCCAAAAGGAGACATGATCTATGACCCCAGGTGGCACTATCCACCTCAACTGATAACCCATTATTCCAAGATGGTCTTTGAAACAGGATAGTTTGATGATGCTGAAGATTGTGTGTGGAGTTTTCTGCCTTGTAGGTGGTTGGGCCTCCAGGTCAAGATCTCTTTTCCTTTGAAGGTGAAAAGTCATATCTGAGAAAACATTCCCAGTGATCCCTCATCTGGGATACACAGACCAGTGTTCA
>NM_018405.4
ACGTGGCCCACGGCGTCCAGGGCGACCAGCCGCGGGCCGCAGGGCATGGACCTTCAGGCCGCCGGGGCCCAGGCGCAGGGGGCCGCGGAGCCGTCTCGGGGCCCGCCGCTGCCTAGCGCGCGGGGGGCGCCCCCCAGCCCGGAGGCTGGCTTTGCTACAGCTGACCACTCCAGTCAGGAGAGAGAGACTGAGAAGGCTATGGATCGACTAGCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTTTAATGAGGACTGGGACTCGGAGTTGAAAGCAGATCAAGGGAATCCATATGATGCTGACGACATCCAGGAGAGCATTTCTCAAGAGCTTAAACCTTGGGTGTGCTGTGCCCCACAAGGAGACATGATCTATGACCCCAGCTGGCACCATCCGCCTCCACTGATACCCTATTATTCCAAGATGGTCTTTGAAACAGGACAGTTTGACGATGCTGAAGATTGAGTGTGGAGCTTTCTGCCTTGTAGGTGGGCGGGCCTCCACGTCAAGATCTCTTTTCCTGTCTTGGAGGTGAAAAGTCATATCTGAGAAAATGTTTGCAGTGACCCCTAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGTTGTTGTTCTTAATGGGCTCCTCCTTGAAATGTGTGTGTGTTTGTGTCAAGAGGAGTTGTGTTCTTTGTAAATAAAGGTTAAAAAGAGAAA

Publications

PMID - Link Title
No publications available for this retrocopy