Retrocopy Name | UBQLN4P2 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr2:152877714-152878011 UCSC | |
Coordinates (T2T) | chr2:153330262-153330559 UCSC | |
Coordinates (hg19) | chr2:153734228-153734525 UCSC | |
Strand | + | |
Parental Sequence | XM_005245348.4 | |
Parental seq. overlap | 249 bp | |
Parental seq. overlap (%) | 17.5% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | UBQLN4P2, located on chr2:152877714-152878011, is a retrocopy of the parental gene UBQLN4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | UBQLN4 |
Full Name | ubiquilin 4 |
Also known as | A1U|A1Up|C1orf6|CIP75|UBIN |
Coordinate | chr1:156033129-156053798 |
Strand | - |
Gene summary | Enables K48-linked polyubiquitin modification-dependent protein binding activity and identical protein binding activity. Involved in cellular response to DNA damage stimulus; negative regulation of double-strand break repair via homologous recombination; and regulation of cellular catabolic process. Located in several cellular components, including autophagosome; nucleoplasm; and site of DNA damage. Part of protein-containing complex. Colocalizes with cytosolic proteasome complex and nuclear proteasome complex. [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | UBQLN4P1 |
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Bonobo | Pan paniscus | UBQLN4P1 |
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Gorilla | Gorilla gorilla | UBQLN4P1 |
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Orangutan | Pongo abelii | UBQLN4P1 |
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Gibbon | Nomascus leucogenys | UBQLN4P1 |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>UBQLN4P2 |
AACTGAGAATTGAGAGCCCCTCCCTAACCTGTGGAATCCCTCACCCCATATCTCCCAGGTTCCTGGGTCTGGTGGGGAGGGCACTGGAGGATTGGGGGCCAGCCAGATGCACTCGACAGTGTCAAACTTCTTTGCAATTAATGCAGTTAGTCTGTGGTCAGGGATGTTCAATAGCCCGGGAATACAGGCCCTCCTCTAGCAGATCTTTGAGAACTCCCAGATGATGCAGAATGTGATCTCAGCTCCCTGCATGGATAGCATGATGCAGATGCTTACCCAAAACCCTAACTTTGATGCT |
>XM_005245348.4 |
gcggccgggtggcggcggcggcatggcggagccgagcggggcCGAGACGAGGCCCCCCATTCGGGTCACCGTCAAGACCCCCAAGGACAAGGAGGAAATTGTGATCTGCGATCGAGCCTCGGTCAAGGAGTTCAAAGAGGAAATCTCCCGGAGGTTTAAGGCTCAGCAGGATCAGCTGGTCCTGATCTTCGCAGGCAAGATCCTCAAGGATGGGGACACACTGAACCAGCACGGAATCAAGGACGGGCTCACTGTCCATCTGGTCATCAAGACCCCTCAGAAGGCTCAAGATCCAGCTGCTGCCACTGCTTCTTCCCCCTCCACACCTGACCCTGCCTCAGCACCCTCCACCACGCCTGCTTCACCCGCCACCCCTGCCCAGCCCTCCACCTCTGGCAGTGCCTCTTCAGATGCTGGCAGTGGAAGCCGGAGGAGCAGTGGTGGGGGGCCCTCTCCGGGGGCTGGGGAGGGATCCCCCAGTGCTACTGCGTCCATACTCTCTGGCTTTGGGGGCATCCTGGGGCTGGGCAGCCTAGGCCTGGGCTCTGCCAACTTCAtggagctgcagcagcagatgcagcggcagctgATGTCCAATCCTGAGATGCTGTCACAGATCATGGAGAACCCCCTGGTCCAGGATATGATGTCTAACCCTGATCTGATGCGTCACATGATTATGGCCAACCCCCAGATGCAGCAGTTGATGGAGCGGAACCCTGAGATCAGCCACATGCTCAATAACCCTGAACTCATGAGGCAGACAATGGAGCTTGCTCGGAATCCAGCCATGATGCAAGAGATGATGCGGAACCAGGACCGGGCCCTGAGCAACCTTGAGAGCATCCCTGGAGGGTATAATGCCCTCCGCCGCATGTACACGGACATCCAGGAGCCCATGTTCAGTGCTGCCCGGGAACAGTTTGGCAACAATCCCTTCTCTTCCCTGGCCGGGAACTCCGACAGCTCATCCTCCCAGCCTCTGCGGACTGAGAATCGAGAGCCCCTCCCTAACCCCTGGAGCCCCTCGCCCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACCGGAGGATCGGGGACCAGCCAGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGGATGTTCAATAGCCCAGAAATGCAAGCCCTCCTCCAGCAGATCTCTGAGAACCCCCAGCTGATGCAGAATGTGATCTCAGCACCCTACATGCGCAGCATGATGCAGACGCTTGCCCAGAACCCCGACTTTGCTGCTCAGGCCTTCAGGATACTTTGAGATCCCCGGAGAAGCTGGCCAGATTTCCTGCAGTGGTAGGGGGTGCCCAGGGAGTCTGAGGCTGTGGGGGAATTCTTAGGGTGAAAAGGCCCAGGTCTCCCCCTGCTACCTTCACCC |
PMID - Link | Title |
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No publications available for this retrocopy |