Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name SCYL2P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:201409615-201413420  UCSC
Coordinates (T2T) chr2:201890296-201894100  UCSC
Coordinates (hg19) chr2:202274338-202278143  UCSC
Strand -
Parental Sequence NM_001317784.2
Parental seq. overlap 3025 bp
Parental seq. overlap (%) 51.4%
Genomic Region Intragenic (TRAK2)
Retrocopy Summary SCYL2P1, located on chr2:201409615-201413420, is a retrocopy of the parental gene SCYL2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SCYL2
Full Name SCY1 like pseudokinase 2
Also known as AMC4|AMCNACC|CVAK104
Coordinate chr12:100267177-100341715
Strand +
Gene summary The protein encoded by this gene associates with clathrin-coated complexes at the plasma membrane and with endocytic coated vesicles. The encoded protein phosphorylates the beta2 subunit of the plasma membrane adapter complex AP2 and interacts with clathrin, showing involvement in clathrin-dependent pathways between the trans-Golgi network and the endosomal system. In addition, this protein has a role in the Wnt signaling pathway by targeting frizzled 5 (Fzd5) for lysosomal degradation. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Dec 2015]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SCYL2P2
Bonobo Pan paniscus SCYL2P1
Gorilla Gorilla gorilla SCYL2P1
Orangutan Pongo abelii SCYL2P1
Gibbon Nomascus leucogenys SCYL2P1
Green monkey Chlorocebus sabaeus SCYL2P1
Crab-eating macaque Macaca fascicularis SCYL2P1
Rhesus Macaca mulatta SCYL2P1
Baboon Papio anubis SCYL2P1
Golden snub-nosed monkey Rhinopithecus roxellana SCYL2P1
Marmoset Callithrix jacchus SCYL2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SCYL2P1
CCTCTTCAGGTTTTTAAAGACCCAACCCTTCCCAGTCTCAAAGAGAAAAAGGACAACTGAGTTATCTTGAATAGCTGAATTTTTTAATCAAATGTTTATTTTGGCTTGTGAATCTTGGTGTTATTTAAAAAATTGAGTTGATGGTCATTGCAAGCTCATCTATTTTAAGTACCACATGGTACACAGTCTACCTTCACAAGTCATTAGTGTTCACTTTAATATGTAAAAAATCTTGATGCTGTATTGATTTGCTTGCATTTAAGATGACAGTGAGAAAATGATAAGCATAAAGAGATCAGCTTATTTGCTTTTTCCGAGGTTACTTTTCAGATGAACTAATGTTTAGTACAAAGAGACTGAGCAAATACTACAAAATTTAACTTGACCTACATTTCGTTGGCGAAGGCAGAGCAGGAACAGCCTGTGTTTAGGGGGGTGGGGAAAAAGAGGCCCAGTTCTGCCCCTCCTGGAAGGAGAGGGAAAAGGTAACTATAACTACCCAATATTGCAGCCATGGAGTCCATGTTTAATAAATTGAAGAGTACTGTTACAGAAGTAACAGCTGATGTCACTAGTGCTGTAATGAGAAATCCTGTCACTAGAGAATTTGATGTTGGTCAGCACATTGCCAGTGGTGGCAGTGGGCTAGCTTGGAAGATTTTTAATGGCACAAAAAAGTCAACAAAGCAGTGGCTGTTTTTGTCTTTGATAAAAAATGATTGACAAATATCAAAAATTTGAAAAGGATCAAATAATTGATTCTCTAAAATGAGGAGTCCAACACTTAACTCGACTTCAACACCCTCGACTTCTTACTGTCCAGCATTCTTTAGAAGAATCCAGGGATTGCTTGGTGTTGTGTACAGAACCAGTTTTTTGCCAGTTTAGCCAGTGTTCTTGGTAACTGGGAAAATCTCCCTTTCCCTATATCTCCAGACATTAAGGATTATAAACTTTATGATGTAGAAACCAAATGTGGTTTGCTTCAGGTTTCTAAAGGATTGTCATTCTTGCATAGCAGTGTGAAAATGGTACATGGAAATATTACTCCTGAAAATACAATTTTGAATAAAAGTGGAGCCTGGAAAATAATGGGTTTTGATTGTTGTGTATCATCAACCAATCCTTCTGAACAAGAGCCTAAATTTCCTTGTAAAGAATGGGACCCAAATTTACCTTCATTGTGTCTTCCAAATCCTGAATATTTGCCTCCTGAATACATACTTTATGTGAGCTGTGAAACAGTCAGTGATATATATTCTTTAGGAACTGTTATGTATGCTGTATTTAATAAAAGGAAACATATATTTGAAGGCAATAAGCAAGACATTTATAAGAGTTTCAGTAGGCAGTTGGATCAGTTGAGTTATTTAGGATCTAGTTCACTTATAAATATACCTGAGGAAGTTCGTGAACATGTAAGGCTACTGTTAAATGTAACTCCAACTGTAAGACCAGATGCAGATCAAATGACAAAGATTCCCTTCTTTGATGATGTTGGTGCAGTAACACTGCAATATTTTGATACCTTATTCCAAAGAGATAATCTTCAGAAATCACAGTTTTTCAACGGACTGCCAAAGGTTCTACTGCCCAAGCATGTCATTGTACAGAGAATTTTGATTTGACTTCAGAATTTGTAAACCCTGACATGGTACCTTTTGTTTTGCCCAGTGTTCTACTGATCGTTGAGGAATGCACCAAAGAAGAATATGTCACATTAATTCCACCTGAACTTGGCCCTGTGTTTAAGCAGCAGGAGCCAATCCAGATTTTGTTAATTTTCCTACAAAAAATGGATTTGCTACTAACCAAAACCCCTCCCAATGAGATAAAGAACAGTGTTCTACCCATGGTTTACAGAGCACTAGAAGCTCCTTCCATTCAATACCAGGAGCTCTGTCTAAACATCATTCCAACCTTTGCAAATCTTATAGACTACCCATCATGAAACATACTTTGATACCAAGAATTAAAAATGCCTGTCTACAAATGTCTTCCCTTGCTGTTCCTGTAAATTCATTAGTGTGCTTAGGAAAGATTTTGGAATACTTGGATAAGTGGTTGGTACTTGATGGTATCCTACCCTTCTTACAACAAATTCCATCCAAAGAGTCTGCAGTCCTCATGGGTATTTTAGGCATTTACAAATGTACTTTTACTCATAAGTTGGGAATCACCAAAGAGCAGCTGACTGGAAAAGTATTGCCTCATCTTATTCCCCTGAGTATTGAAAACAATCTTAATCAGTTCAATTCTTTCATTTCCATCATAAAAGAGATGCTGAATAGGTTGGAGTCTGAACATAAGACTAAGCTGGAGCAACTTCATATAATGCAAGAACAACAGAAATCTTTGGACATAGGAAATCAAATGAATGTTTCTGAGGAGACAAAAGTTACAAATATTGGGAATCAGCAAATTGACAAGGTTTTTAGCCACATTGGAGCAGACCTTCTGACTGGCAGTGATTCCGAAAATAAAGAGGATGGGTTTCAGAATAAACATAAAAGAGCATCACTTACACTTGAAGAAAAACAAAAATTAGCAAGAGAACAAGAGCAGGCATAGAAGTTGAAAGGCCAGCAGCCTCTTAAACCCCAAGTGTACACACCTATTGCTGCTGTTAAACAGACTAAGGACTTGACAGACACATTGATGGATAATATGTCATCTTTGACTAGCCTTTCTGTTAGTACCCCTAAACCTTCTGCTTCAAGTACGTTCACTTCTGTTCCTTCCATGGGCATTGACATGATGTTTTCTACACCAGTTGATAATACAAAGAGAAATTTGACAAATGGCCTAAATGTCAATATGGGCTTTCAGACTTCAGGATTCAACATGCCCGTTACTACAAACCAGAACTTCTACAGTAGTCCAAGCACAGTTGGAGTGACCAAAATGACTCTGGAACACCTCCCACTTTGCCAAACTTCAGTGCTTTGAATGTTCCTCCTGCTGGTGCGAAGCCAACCCAACAAAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATGAACCAATTATCACAACAGAAACCAAATCAGTGGCTTAATCAGTTTGTACCTCCTCAAGTTTCTCCAGCTACGGGCAGTTCAGTAATGGGAACACAGATGAACATGATAGGACAATCTGCCTTTGGTATGCAGGGTAATCCTTTCTTCAACCCACAGAACTTTGCATAGCCACCAACTGCTATGACCAATAGCAGTTCAGCTAGCAATGATTTTAAAGATCTTTTTGGGTGAGGTGTCTATTTTGAAGGATTATTTCAGTTCCAATCATGGGTGAGCTGATTTACATCTTTATGTAGTTGGCTTGGAGGAACTACTTCTATGGGACAGTGAATGGTTCTGTGACAGAAAACATCTGTGTCCATGCCAGCATAGTAGTTGTATGGACTTCTAACCAGTTGAGTTTTTTTAAAGCACTGAGGATTTTTTTCCTCTTACCAACTCCTCTCCAGGt
>NM_001317784.2
AGTCTTTTTCcccctcccttactcttcgtccccggtccctcccctccccacccctTTCCTTCTAGCTCCGACGTTTGCGGCCGCGGGGGCGGCGGAGGATATGGAGTAAAGCCAGAGTCAGTGGCCAGGCACGAAGGCAGAGCAGGAACAGCCAGGAGGCGTTTATTAGGGGGGCGGGGGGAAAGAGCCCCAGCACCGCCCCTCCTGGAAGAAGGAAGAGGTAACTATAACTACCCAATATTGCAGCCATGGAGTCCATGCTTAATAAATTGAAGAGTACTGTTACAAAAGTAACAGCTGATGTCACTAGTGCTGTAATGGGAAATCCTGTCACTAGAGAATTTGATGTTGGTCGACACATTGCCAGTGGTGGCAATGGGCTAGCTTGGAAGATTTTTAATGGCACAAAAAAGTCAACAAAGCAGGAAGTGGCAGTTTTTGTCTTTGATAAAAAACTGATTGACAAGTATCAAAAATTTGAAAAGGATCAAATCATTGATTCTCTAAAACGAGGAGTCCAACAGTTAACTCGGCTTCGACACCCTCGACTTCTTACTGTCCAGCATCCTTTAGAAGAATCCAGGGATTGCTTGGCATTTTGTACAGAACCAGTTTTTGCCAGTTTAGCCAATGTTCTTGGTAACTGGGAAAATCTACCTTCCCCTATATCTCCAGACATTAAGGATTATAAACTTTATGATGTAGAAACCAAATATGGTTTGCTTCAGGTTTCTGAAGGATTGTCATTCTTGCATAGCAGTGTGAAAATGGTGCATGGAAATATCACTCCTGAAAATATAATTTTGAATAAAAGTGGAGCCTGGAAAATAATGGGTTTTGATTTTTGTGTATCATCAACCAATCCTTCTGAACAAGAGCCTAAATTTCCTTGTAAAGAATGGGACCCAAATTTACCTTCATTGTGTCTTCCAAATCCTGAATATTTGGCTCCTGAATACATACTTTCTGTGAGCTGTGAAACAGCCAGTGATATGTATTCTTTAGGAACTGTTATGTATGCTGTATTTAATAAAGGGAAACCTATATTTGAAGTCAACAAGCAAGATATTTACAAGAGTTTCAGTAGGCAGTTGGATCAGTTGAGTCGTTTAGGATCTAGTTCACTTACAAATATACCTGAGGAAGTTCGTGAACATGTAAAGCTACTGTTAAATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACAAAGATTCCCTTCTTTGATGATGTTGGTGCAGTAACACTGCAATATTTTGATACCTTATTCCAAAGAGATAATCTTCAGAAATCACAGTTTTTCAAAGGACTGCCAAAGGTTCTACCAAAACTGCCCAAGCGTGTCATTGTGCAGAGAATTTTGCCTTGTTTGACTTCAGAATTTGTAAACCCTGACATGGTACCTTTTGTTTTGCCCAATGTTCTACTTATTGCTGAGGAATGCACCAAAGAAGAATATGTCAAATTAATTCTTCCTGAACTTGGCCCTGTGTTTAAGCAGCAGGAGCCAATCCAGATTTTGTTAATTTTCCTACAAAAAATGGATTTGCTACTAACCAAAACCCCTCCTGATGAGATAAAGAACAGTGTTCTACCCATGGTTTACAGAGCACTAGAAGCTCCTTCCATTCAGATCCAGGAGCTCTGTCTAAACATCATTCCAACCTTTGCAAATCTTATAGACTACCCATCCATGAAAAACGCTTTGATACCAAGAATTAAAAATGCTTGTCTACAAACATCTTCCCTTGCGGTTCGTGTAAATTCATTAGTGTGCTTAGGAAAGATTTTGGAATACTTGGATAAGTGGTTTGTACTTGATGATATCCTACCCTTCTTACAACAAATTCCATCCAAGGAACCTGCGGTCCTCATGGGAATTTTAGGTATTTACAAATGTACTTTTACTCATAAGAAGTTGGGAATCACCAAAGAGCAGCTGGCCGGAAAAGTGTTGCCTCATCTTATTCCCCTGAGTATTGAAAACAATCTTAATCTTAATCAGTTCAATTCTTTCATTTCCGTCATAAAAGAAATGCTTAATAGATTGGAGTCTGAACATAAGACTAAACTGGAGCAACTTCATATAATGCAAGAACAGCAGAAATCTTTGGATATAGGAAATCAAATGAATGTTTCTGAGGAGATGAAAGTTACAAATATTGGGAATCAGCAAATTGACAAAGTTTTTAACAACATTGGAGCAGACCTTCTGACTGGCAGTGAGTCCGAAAATAAAGAGGACGGGTTACAGAATAAACATAAAAGAGCATCACTTACACTTgaagaaaaacaaaaattagcaaaagaacaagagcaggcacagaaGCTGAAAAGCCAGCAGCCTCTTAAACCCCAAGTGCACACACCTGTTGCTACTGTTAAACAGACTAAGGACTTGACAGACACACTGATGGATAATATGTCATCCTTGACCAGCCTTTCTGTTAGTACCCCTAAATCTTCTGCTTCAAGTACTTTCACTTCTGTTCCTTCCATGGGCATTGGTATGATGTTTTCTACACCAACTGATAATACAAAGAGAAATTTGACAAATGGCCTAAATGCCAATATGGGCTTTCAGACTTCAGGATTCAACATGCCCGTTAATACAAACCAGAACTTCTACAGTAGTCCAAGCACAGTTGGAGTGACCAAGATGACTCTGGGAACACCTCCCACTTTGCCAAACTTCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATGAACCAGTTATCACAACAGAAACCAAATCAGTGGCTTAATCAGTTTGTACCTCCTCAAGGTTCTCCAACTATGGGCAGTTCAGTAATGGGGACACAGATGAACGTGATAGGACAATCTGCTTTTGGTATGCAGGGTAATCCTTTCTTTAACCCACAGAACTTTGCACAGCCACCAACTACTATGACCAATAGCAGTTCAGCTAGCAATGATTTAAAAGATCTTTTTGGGTGAGGTGTCTTACTTCTATTTTGAAGGATTATTTCAGTTTCAATCATGGGTGAGCTGATTTACATCTTTATATAGTTGGCTTGGAGGAAGTACTTCTATGGGAAAGTGAACAGTTCTGTGACAGGAAACATCTCTGTCCATGCCAGCATAGTAGTTGTATGGACTTCTAACCAGTTGAGTTTTTTAAAGCATTGAGGATTTTTTCCTCTTACCAACTCCTCTTCAGGTTTTTAAAGACCCAGCCCTTCCCAATCTCAAAGAGAAAAAGGAAACTGAGTTATCTTGAATAACATAACTTTTTAATCAAATGTTTATTTTGGCTTGTGGATCTTGGTGTTATTTAAAAAATTGAGGTGATGGTCATTGCAAGCTCATCTATTAAGTACTATATGGTACACAGTCTATGAGTCATTAGTCTTCATTTTAATATGTAAAAAATCTTGATGCTGTATTGATTTGTTTGCATTTAAGATGACAGTGAGAAAATGATAAGCATAAAGAGAAGTATCAGGTTATTTGCTTTTTCCAAACTTTTCAGATGAACTATTGTTTAGTACAGAGACTGAGCAAATACTACAAAATTCAACTTAACCTTCATTTCATTGGTTTAAATGCGTTATTAACCATCTTAAGTGCAAACTAATCATTGTAAATTATATTTTAGCATGGTCTGCCTCAAATAGTAATGTATTTTTCTGCATTCACTTGGATATATTTAGAATCACTTTTTTCCTCCTGTATCAAGGAAGAGGTATGTGCTGATTTGTTTGGATATTTGACAAGGCACTCTGATGTGACTTCCCTGACTACTACCTTCATATTTCATTTCAAATTCAAACTTCTGAGGTTGCAGCATATATGAATTGCATTTTCAAAAGAAGATTTGTAAGAATTAAACTATATTTATGAGTAAACTTTTGAGGTTTCTGCTGTATTGTTTCAAATGTAATAAACTTTACTTCTGTAAAAATTGAGCAGTTGTATCTTCTGACCACCAACAGATTTTCAGCTTGCCATGATAGTCTGACCTCATTAATTACTGCTACTGAAGTTCAATTTTTTTCTAGGAATTTTAGGAACCTTTTGTTTAAATATTTTAATTTCTATTAGCCATTTTTAGGAAGGAAAGAATCAATTCTCTTAACAGGAAACATGCTTTATTTTTCAAAACCTTTCTCTGATATTTTTCTTTAATTTGCTGATTATTCAACCACAGAGCCTTATGCTATAAATGTCATTTGTATTTTAAAAAATAATATTCCACTCATAAAACTTTAAAACCATCTTTCAACGAACTATATATGTATTATAGTTGCTGCCATAGAGTTGATGGTTTTTAATTATCTGGAACCAGCAATCATTTAAAATAAACCATATTAAGTTTAGTATGCTGGTATTGTTTATTCATTTTATATGAATATTCATTGAAAATATATACACAATATATGTAATACACAGCACTTGATTACAAAATGTAATTTAATTATATTATTGCTGGCAGCATTCAGTTAAGAGGGTACTTTAAAAAATAGAAGTCAGCTTTCACATCTGATTTCTGTATGGGCTGTACTTGGTTAACTTGATTTTAGAAAAAGGACTAACAGAATTGCTAAAGAAATGCATCCAATAAATGAAAAACAGTAGGAAGATCAAATGTTTTTGTCAAATATATTCACAACTTGACCAGATTAGCTGTCCTGTTTGTAATGCAATATTAATATGTCTTTTGGGAAAAAGCCTACATATGGAATAAAATAAGTATTGAAGAATTTTTCTTTGTAACAATTTAGTAGTCACTGTTTATTGAGAAATTGTTTTTTATTTTGTAAAATAACATGATGTTAGTGTTGAACTCTTAAACAGAAAGAAAGCTTAATATAACAGCTTATAGAACTTGAACTACTAAATATGAAAATAAGTCATTTGAAAAAAATACAGTATGTAAAATTTGTTCATTCGTTGAGGTAATGGTGCTATGTTTTTACAAAATTGTTCCTACACCTTTTTTCTACTTCAGGTATTTTATTTCAACCATTTCCATCAATTGAACTGTTACCATTGCCTTTTTCTGTTGAGAAATTGCCTCTGAAAAATAGTGCTATTTTTCAGCTTAAGTGTTCTTAAGTGAATGAAATTTTCAAAGTACTAGATCACCTTAAAATTATTTCACGTACTGAAGACAATTAAGTCCGTTATGTTTAGAGTAGAAAATGTTTAGGTTAAAGAGCATCTGTCAACAGAATCTACAAAAAAGATTCCCTTGCATTTGAATTAGTTCTCTATTCTCCTATTGCTAAATGTGTGATATATAGAGAGGATGTATAAAAGGAAATGGAAATAGACTATGTACTTGTCTGGTTTTTGTTTGTTTTTATTTTGGAATGCTTATAAGCCTCCTTTACACTGAATAAGGAAGTAGTTTTTGTTTTCTTTTGACCTGTAAAATACCTCACATGGTTGTTTTTACACATGAAAGAAAAAGGTATATGCGAACATACCTGATATCAAGAGGAGTATGCACCAAATAAATTTTAGCTTTGATAAAA

Publications

PMID - Link Title