Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PIMREGP1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:202335302-202336769  UCSC
Coordinates (T2T) chr2:202816301-202817768  UCSC
Coordinates (hg19) chr2:203200025-203201492  UCSC
Strand -
Parental Sequence NM_019013.3
Parental seq. overlap 1352 bp
Parental seq. overlap (%) 70.5%
Genomic Region Intergenic
Retrocopy Summary PIMREGP1, located on chr2:202335302-202336769, is a retrocopy of the parental gene PIMREG. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PIMREG
Full Name PICALM interacting mitotic regulator
Also known as CATS|FAM64A|RCS1
Coordinate chr17:6444455-6451469
Strand +
Gene summary Predicted to be involved in cell division. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PIMREGP1
Bonobo Pan paniscus PIMREGP1
Gorilla Gorilla gorilla PIMREGP1
Orangutan Pongo abelii PIMREGP1
Gibbon Nomascus leucogenys PIMREGP4
Crab-eating macaque Macaca fascicularis FAM64AP4
Baboon Papio anubis PIMREGP4
Golden snub-nosed monkey Rhinopithecus roxellana PIMREGP5
Green monkey Chlorocebus sabaeus Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PIMREGP1
GTGTCGGGGTCTAGTGGGCAGAGAAGACTCTTGGCCAGGCAGATGGCTTCTTGGTGGCAGAGAATGGGGACCTCCGTGCACCGGAGATGTCTCCAGCACCAGGAGCAGCTGGAGGATGCAAGGAGCTGCAGCCCGTGACCAGCCATCAGGAGAACTCCGCGGGTCCCTGGGGTCCCTGTGCAGACAGTTCCAATGGAGGCTGCCTCTGAGAGCCATCAACCTCAACTTCCGTGCAGGCCCTTCCTGCAAATGCTTGGAAACCCCAGAGCCAGGGCAGCAGGGCCTCCAGGCTACGGCTCACTCAGCTAAGAGTGCCTTGGGTGCCATGTCCCAGAGAATCCAGGAGTCCTGCCAAAGTGGCACCAAGTGGCTGGTGGAGACCCAGGTGAAGGCCAGGAGGAGGAAGAGACGGGCACAGAAGGGCAGTGGCTCCCCAGCTCACAGCCTGAGCCAGAAGAGCACCCGGCTATCTGGAGATGCCCCTGCCCACTCAGCCCACAGACCCCTGGGAGAAGGAGCATAACTGCCTCTCCGCCCGGATAGGCTCCCATGCCTACCCATTATGACAGTCGATGCAGGAGGCTGCCTTCTGGAGCCCCTACTCCTCAACAGAGCCACTCTGCTCTCCCAGCCAGTCTGGCAGTGACCTAGAGCCTATGGGGGTGGGAATTCAGCATCTCCAGAAGCTGTCCCAAGAGCTAGATGAAGCCATTATGGCGGAAGAGAGTGGTGACATCATCTCTCTCATTCATGGCTGAGTAAGTGGCCTGCAGGAAACAAGCCTTGTCTGATTGCCAAGGCTTCATACCCAAGGATGTCTGTGCTTCCCCATGAGCTTCCTGGAGGAAGCCCCCAGGAGTCATCAGTACCCCTGGGCCACTGCTAACAAGGACCTGACTAACAAGGAGCCCAGAGCCCCCTGGCTCTGGCCACATCTGGATCCATCAGTGACTGCCTGCCATAGCCTGAGAGTGTCTTGGGGAGACCTTGCAGAGGTGGGGAGAATTGTTCCTTCCACTTTCCCAGGGGACTCTTGAGCTTAGAAACTCATCATACACTTGACCTTGAGCCTTGTATTTGCCTCATCTACAACGTGAAGTGCTAGCATCAGATGTTAGAGAGCTCTTAGCTGTGTACCCAGGTGCCTGGTTGTTGGGGAGTCATCTGCAGAGTCACTCACCCACTGTGTTTCCGGTGCCAAGGCTCTTGGGGGCCCCACTCTCATCCCTGCTTTCCCTACCAGGGACTCGTAGGAAGGCATAGGAGATATTTCCAGGCTTAAGACCCTGGGCTCACGGGTACCTATGTATATGCTAAATGCAGAGCACTGTGGGTGTGCCTGTTCAAGAACAATTTTTGCTCTTTGTAAATTATTTAAGAAACCTGCTTTGTCATTTTATTAGAAAGAAACCAGCATGTGACTTTCCTAGATAACACTGTTTTCTCATAATAAAGACTGTTTGCATTA
>NM_019013.3
GTGCTGCGGCTGTGCTCGGCCTTAGTGGTGTCGGGGTCTAGTGGACAGAGAAGACTCTTGGCCAGGCAGATGGCTTCTCGGTGGCAGAACATGGGGACCTCCGTGCGCCGGAGATCTCTCCAGCACCAGGAGCAGCTGGAGGACAGCAAGGAGCTGCAGCCTGTGGTCAGCCATCAGGAGACCTCTGTAGGGGCCCTGGGGTCCCTGTGCAGACAGTTCCAAAGGAGGCTGCCCCTGAGAGCCGTCAACCTCAACCTCCGCGCAGGGCCCTCCTGGAAACGCCTGGAAACCCCAGAGCCAGGTCAGCAGGGCCTCCAGGCTGCAGCTCGCTCAGCTAAGAGTGCTTTGGGTGCCGTGTCCCAGAGAATCCAGGAGTCCTGCCAAAGTGGCACCAAGTGGCTGGTGGAGACCCAGGTGAAGGCCAGGAGGCGGAAGAGAGGAGCACAGAAGGGCAGTGGATCCCCAACTCACAGCCTGAGCCAGAAGAGCACCCGGCTGTCTGGAGCCGCCCCTGCCCACTCAGCCGCAGACCCCTGGGAGAAGGAGCATCACCGCCTCTCTGTCCGGATGGGCTCACATGCCCACCCATTACGGCGATCAAGGCGGGAGGCTGCCTTCCGGAGCCCCTACTCCTCAACAGAGCCCCTCTGCTCTCCCAGCGAGTCTGACAGTGACCTAGAGCCTGTGGGGGCGGGAATTCAGCATCTCCAGAAGCTGTCCCAAGAGCTAGATGAAGCCATTATGGCGGAAGAGAGTGGTGACATCGTCTCTCTCATTCATGACTGAGGAAGTGCCTGCAGGAAACAAGCCCTGTCTGACCGCCAAGGCTTCATACTCAAGGATGTCTATGCTTCCCCGTGAGCTTCCTGGAAAAAACCCCCGGGAGTCGTCAGTACCCCTGGGCCACTGCTAACAAGCACCTAACAAGGGGCCCAGAGCCCCCTGCTCCAGCCACATCTGGACCCATCAGTGACTGCCTGCCATAGCCTGAGAGTGTCTTGGGGAGACCTTGCAGAGGGGGAGAATTGTTCCTTCTGCTTTCCTAGGGGACTCTTGAGCTTAGAAACTCATCGTAcacttgaccttgagccttctatttgcctcatctataacatgaagtgctagcatcagatatttgagagctcttagctctgTACCCGGGTGCCTGGTTTTTGGGGAGTCATCCGCAGAGTCACTCACCCACTGTGTTTCTGGTGCCAAGGCTCTTGAGGGCCCCACTCTCATCCCTCCTTTCCCTACCAGGGACTCGGAGGAAGGCATAGGAGATATTTCCAGGCTTACGACCCTGGGCTCACGGGTACCTATTTATATGCTCAGTGCAGAGCACTGTGGATGTGCCAGGAGGGGTAGCCCTGTTCAAGAGCAATTTCTGCCCTTTGTAAATTATTTAAGAAACCTGCTTTGTCATTTTATTAGAAAGAAACCAGCGTGTGACTTTCCTAGATAACACTGCTTTCTCATAATAAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCCCCCGCCCTCCCACACCACTCTGGGCTATAGATTTGTAATTTGTGGTTTGGGGTCTGGCCCTCATCCACCTCTGCTCCGAGCCAGTCTGCCCCCAATCCCACCCCAGGGAGAACATGTAGAAAGGGAAAGGTTTCTCAACTTAGTTCAGACCAAAACACATTGTAAAGGCAAAGAAGGTTTTTATTTAAGTGACAACATTTGAGAGCTAAAAACCAGCTCACATCAAAATCAAGACCCAGTTGTAAAAATCTTTTAACTCCATAATGCTGTTTTTGTCTTGTTAGAAATCTGATATCTTACATTAGCGTTTCTAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCACAGAA

Publications

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