Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CRLF3P3
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr13:7836448-7838159  UCSC
Strand +
Parental Sequence XM_005583376.1
Parental seq. overlap 1219 bp
Parental seq. overlap (%) 41%
Genomic Region Intergenic
Retrocopy Summary CRLF3P3, located on chr13:7836448-7838159, is a retrocopy of the parental gene CRLF3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CRLF3
Full Name N/A
Also known as -
Coordinate chr16:28256805-28313035
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CRLF3P1
Chimpanzee Pan troglodytes CRLF3P1
Bonobo Pan paniscus CRLF3P2
Gorilla Gorilla gorilla CRLF3P2
Orangutan Pongo abelii CRLF3P1
Gibbon Nomascus leucogenys CRLF3P3
Green monkey Chlorocebus sabaeus CRLF3P2
Rhesus Macaca mulatta CRLF3P3
Baboon Papio anubis CRLF3P3
Golden snub-nosed monkey Rhinopithecus roxellana CRLF3P3
Marmoset Callithrix jacchus CRLF3P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CRLF3P3
TGATGGAGCTAGAGCCTGAGCTGCTGCTTCAGGAGGCCCTCAAGAACGTGGAGGTGGCAAGAACTACTGGTGGCAGCTGGGTCACCACTTGAGGGGCTGTGGGAGGCACAGAGATCAAAGACAGTGCATCACAGAAAAGGGATTTCTTAAACAACATATTAATGATTTAAAGGGAACCCTTGCAAAGCTCCTGGATGAATGATTGGTGACCCTTTTGCAAGAGGTGGGCACCATTAAACAGACCATTAAACCACCACTAGATGATTGCCAGAAGCTCATAGAACACAGAGTCAACACTCCAGAGGGTTTAGTACGAAAAGGTGAGATTGCCATGGTTGGTGGTGTAGGAGAAGAGAATGAGAAACTGTGGAGCTTTGCCAAAAAGGCCTTGCATGTTCAGTTGGACGGCATACAAGAAGTTCCTTTACTGGTTGATGTGCCTTGTTTATCTGCTCAGTTGGATGACTCTATTCTTAACATCATGAAAGACCACATTCTTAAGTATGGAACTGTAGCATCTTGCCCACCAGTACAGATAGAAGAACTGATAGAGAAACCTGGAGGCATCATAGTACAATGGTGTAATGTGGATGACAACTTTACGGCACAAGATGACAGGCTCCAGTTTTGTAAATGTACTTCAAATCACTTTGAGGATGTATATGTATGTTCTGAAACTGAATTCATAGTATTGCACATGGACTCCAATGTTGATGATCATTTCAGAATCTGCACCGAGGAGATGGCCGACAGGAGCGGAGTCCTTGGAGTGTCTGTCAGACAGTTCATTCCATATTTGTGCCTCATGAGTGGACAGCTGGTTTTGAGGGGAACAGTCTGAGCAATCAAAGAAATACGTCATGCTGGAACGATTCTGAATATTCAGGTGTTCTCGACTCCAGAGCTCTAACTTATTTCTCTGGGCAGACATTAATATTTAGAGTTGAAACTGTGGGACTACAAGACAGAAGAGGCAGTATAGGAGTGTGTCATAAAAACAGAATTTTaCACACAAATCAAAAACAGAATGTCTAGGACTCTCTGCAGCAGGATAAAGCTATGTGCATTGGTACAAATGGTGCAATTTTTGTCAGTGGAAAAGAAATGCCTCATCAGTTACTTGCAATTACTTCTGTGTCCACTCTCACATTTGACATTGAAGCTGTGACTCTAGGAACCACCAATAATAATGAAGGCAGAAACGTCAAGCTAGAGTAACTCTTAGTTCAAATAACAGAGTCATGGTTTTTGATTGGTCACGTGATCAATCTTGTGGTTCTCTTTATTTGGATGCTGATTTTTCTATCCTGGATGGAAAGTGTTAGCGTTTTCGACGTTGGGGTGCCTGGCTTTGGTTTGCAGGATTTAACCTAGCTGTCCTCAGCCCAGCTTAGTTGTAATT
>XM_005583376.1
gcggggcggtgcttccgccagcgcgaggccgggccgggcagctcggaggcgCCCGGCGCAGTCGGGAAGCCGCGCTAGGTGTCGCCGGCCGCGCGGCCAGATGAGGGGGGCGATGGAGCTGGAGCCTGAGCTGCTGCTGCAGGAGGCCCGCGAGAATGTGGAGGCAGCGCAGAGCTACCGGCGGGAGCTGGGTCACCGGCTTGAGGGGCTGCGGGAGGCGCGGAGGCAGATCAAAGAAAGTGCATCACAGACAAGAGATGTTCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTTGGAAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGAAGACTTAGTCCGAGAAGGTGAGATTGCCATGCTTGGTGGTGTGGGAGAAGAGAATGAGAAACTGTGGAGCTTTACCAAAAAGGCCTCGCACATTCAGTTGGACAGCTTACCAGAAGTACCTTTACTGGTTGATGTGCCTTGTTTATCTGCTCAGTTGGATGACTCAATTCTTAACATAGTGAAAGACCACATTTTTAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGATAGAAGAACTAATAGAGAAACCTGGAGGCATCATTGTACGATGGTGTAAGGTGGATGACGACTTTACAGCCCAAGATTACAGGCTCCAGTTTCGTAAATGTACTTCAAATCATTTTGAGGATGTATATGTAGGTTCTGAAACTGAATTCATAGTATTGCACATAGACCCCAACGTTGATTATCAGTTCAGAGTCTGTGCCCGAGGAGATGGCCGACAGGAGTGGAGTCCTTGGAGTGTTCCCCAAATAGGTCATTCCACATTGGTGCCTCATGAGTGGACAGCTGGTTTTGAGGGGTACAGTCTGAGCAGTCGAAGAAATATAGCACTCCGGAATGATTCTGAATCATCAGGTGTTCTCTACTCCAGAGCTCCGACTTATTTCTGTGGACAGACATTAACATTCAGAGTTGAAACTGTGGGACAGCCAGACAGGAGAGACAGCATAGGAGTGTGTGCGGAAAAACAGGACGGATATGACTCTCTGCAGCGGGACCAAGCTGTGTGCATTAGTACAAATGGTGCAGTTTTTGTCAATGGAAAAGAAATGACGAATCAGTTACCCGCAGTTACCTCTGGGTCCACTGTCACATTTGACATTGAAGCCGTGACTCTAGGAACCTGCAATAATAATGAAGGTGGACACTTCAAGCTTCGAGTAACTATAAGTTCAAATAACAGAGAAGTGGTTTTTGATTGGTTACTTGATCAGTCATGTGGTTCTCTTTACTTTGGATGCTCATTTTTCTATCCTGGATGGAAAGTGTTAGTGTTTTAGATGTTTGGGTGCTTGGCTTTTGTTTTCAGGGTTTAACATAGCTGTCCTCAGCCCAGCATAGTTGTAATTCCTTTAAAAAAAAAAAAAAAAGTTGAATTCATCTCTAACTTAGGCCGTTGGAAATGGAAAGTGTTTACTGGATTCATTTTGTAATATTTTAGCAAAAAGAGACTTGAATGTTGTGGACAAAATCATATAATTCAGTCATTTTTATTTTTACCATACTGTTACATATCACATCACAGTAAAAATCAAATTGGTTTTACAAGTATGAGAAAATATAGAAAGTTCTATACCCTTCCACTGTACTTCTTAAAGTGGTTATTAGACCAGGAAAACTTAATGTAATATTATTTTTTAAATCATCATAAAGGATCCAAGTCCGTGTAACTCTTTAGAATAAAACAAGAGGAATAGATCAGATAGAAGAAGCTGTGTAATGTATTAATACATCCACTCATGTGCTGTCCACATGAATGTGTTGACTGTGCTTTCCATGTTCGGGTATTTGTAAGCAGTGTGGACTTTTATCTCATCTTCAATAATCTTTAAGTCCCCAAAACATTATAATGttttctttttttttgagacggagtctcgctcttgtcgcccaggctggagtgcagtagtgtgatctcagctcactgcaacctctgtctcccggggtcaagtgatcctcctgcctcagcctcctgagcagctggaattacaggcgtctgccaccacacccggctaatttttgtatttttagtagaaacggggtttcaccatgttggccaggttggtttcaaactcttgacctcaggtgatccacccgcctcagcctcccaaagtgctaggattatatgcgtgagccactgcaccaggccAATTTTTGTATTTTTTTAAATGCTTGACCAAGTGTCTATAATAGGCAAGTAGTACCTTTGGTTCTTTCATTGCAATTTGATTCAGTATAGGCTACAGTATTTTTACAGGGTAAAACTACTTATGGAAGTAGTATGCACAGCAGTGTTAGCCATTTCATATGTATGTAATATGCACATGTGTGTATCCAACCTGCCTGTGACGTGCATTTTACTCTTTGCAGAGTATGAGCTACAGTCCAGTTTAATGTCAGTTTGATAAGTGGTCTCTTAGCAGACCAAAAAAATACAGGATAAATACTTAACCTTTTTTTTTTGAAAACTTAAATTTATGTGTAAAATATTTATTTGAAGGACTTTAATATGTAAAAAAATTGTCTTGCTATGCCAGCCGCTACGGATTTTATTTTAATGTGAATTATTTTTTTCATTTTTACCAGTAGTGAAAAAGTAGAAAAGCAAGTATGATATTTTTGTAAGATAATTTATTTGGGGATTCATGTTCCCTGTTAGACAATCATGACCTTTTCTCCTTGTCTTTTTATGTATAAGTAAGTAGAATTTCACTTGTTTAGGGATTAAGAAGATGTTCTAGAATGTACATACCTTGTCCAGCCATCAGAATCAAAATAAAAAACTAAAAAAGTTCA

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