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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CLEC1AP1
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Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:222697336-222699469  UCSC
Coordinates (T2T) chr2:223182415-223184544  UCSC
Coordinates (hg19) chr2:223562055-223564188  UCSC
Strand -
Parental Sequence NM_001297748.2
Parental seq. overlap 1102 bp
Parental seq. overlap (%) 41.3%
Genomic Region Intragenic (MOGAT1)
Retrocopy Summary CLEC1AP1, located on chr2:222697336-222699469, is a retrocopy of the parental gene CLEC1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CLEC1A
Full Name C-type lectin domain family 1 member A
Also known as CLEC-1|CLEC1
Coordinate chr12:10069504-10099065
Strand -
Gene summary This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signaling, glycoprotein turnover, and roles in inflammation and immune response. The encoded protein may play a role in regulating dendritic cell function. This gene is closely linked to other CTL/CTLD superfamily members on chromosome 12p13 in the natural killer gene complex region. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CLEC1AP1
Bonobo Pan paniscus CLEC1AP1
Gorilla Gorilla gorilla CLEC1AP1
Orangutan Pongo abelii CLEC1AP1
Gibbon Nomascus leucogenys LOC100602851P1
Green monkey Chlorocebus sabaeus CLEC1AP1
Crab-eating macaque Macaca fascicularis CLEC1AP1
Rhesus Macaca mulatta CLEC1AP1
Baboon Papio anubis CLEC1AP1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Related Sequence

>CLEC1AP1
GATTCTGATAATTGTCTCCCTTCCACAGGAATTTCTCCCAGGAAAGAAATATATCCCCAACTCAGTTCCATATCAGAATTACTCTCCTCAATATTCCCTTCAGAGAGATTGAAAACCAGAAAAGTCACTCTTCATGTGCGTCTGCAATAGTTTTATTTCAGTTCCTATTTTCTTCCATTTGACCCACATTTATACCTTTCAGATACTTAAGATTTAATAATAATAAACGTAATTACTGTGGAGGAAAAAAAAAAAGATTCTGTACAGGACAGTGAAAGTTGGCAAAAATGTAAATATATCTGCATTGCTAAGAACTCTACCATCCAAAGATAAACACACAAGAAATGCTGGAGTTTGCTGTGTCTCAAAGCTACTCTGAGTTTTTCTACTCTTATCAGACAGGGCTCTTCCACCCGGGCAATGGCAAGGCCTGGCTATGGAAGGACGGAACTCCTTACTCTTCTGAACTCTTTGATATTATAATAGATGGCACTACCCTAAGAAGCAGAGGCTGTGTGACCATCCTCCATGGAAAGGCTTTCTCAAAGAACTGCTGAGAGTTGAGGTGGTATGTGTGTGAGAGGAGGGTGGCAATGGTGAAGCCGGAGACCCTCCATTAGCCTCCCTGAACCATTAGGTGAAGGTGATTGACTCTCCAGCTGCGACTACCAACAACAGAGTAGGAAAGTGAGGCCAGTGCAAGGGCTACTCGAGACACTGGGAAATTGAACATAAGCAGGAAAGACTATCTCTCTGACTAGTACAAGATGGAATCTCATGTTTCCTGTTCAGGATCACCAGCATTTCCGAGATAGGGTCCATATACATATTTACCAGTCACAAGAAGTCCTGTTTATATGCCACCAACCAGCCTCAGAAATCTATAATGTTGTCTACCTTCTTGGCTTAGAGATAACATTTAGCTTGCTTTCTTCTCAACATCTAATGTCACCTCCCTGTTTCCATGTCACCCTTACACTTGGGGGATTGAGAAACTTTTTGAAGTAAAGGAAATACATGGAAGTAACATCTTTTGTCCTGACGGTCAACTAGTCCATGAGAAGTTAGCAATTACTCCCCAGATTGTACTACCAAATGCACAAGGAATCCTTATTTTATTTCAGTTCATGCTATTCATTTTCCAGTCTCTCACTAAAACCCCATCTGCTATGTCTATGACCTGCTTCCCTACAGGGATGTCTCTTGTCATAAGAATCTCAATGTCTTATAAACATATGTTCCTGTGTCCATTAAGAGTCTGATAATTCAATCTCCTCCAGCCCAGAACATGAAGTTTGCAGAAAGTCTGAAGCATGTGGCTGAAAAACTCTGTCATGAGCTCTGCAACAAAGCTGGAGTACACAGGTGCAACCTATGTCCAGAAAAATAGGTGTATGGGGACAAATGCTACCAGTTCTATAAAGATAGCAAAAGTTg
>NM_001297748.2
ACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAGTTTTTCAGTACTACCAGCTCTCCAATACTGGTCAAGACACCATTTCTCAAATGGAAGAAAGATTAGGAAATACGTCCCAAGAGTTGCAATCTCTTCAAGTCCAGAATATAAAGCTTGCAGGAAGTCTGCAGCATGTGGCTGAAAAACTCTGTCGTGAGCTGTATAACAAAGCTGGAGCACACAGGTGCAGCCCTTGTACAGAACAATGGAAATGGCATGGAGACAATTGCTACCAGTTCTATAAAGACAGCAAAAGTTGGGAGGACTGTAAATATTTCTGCCTTAGTGAAAACTCTACCATGCTGAAGATAAACAAACAAGAAGACCTGGAATTTGCCGCGTCTCAGAGCTACTCTGAGTTTTTCTACTCTTATTGGACAGGGCTTTTGCGCCCTGACAGTGGCAAGGCCTGGCTGTGGATGGATGGAACCCCTTTCACTTCTGAACTGTTCCATATTATAATAGATGTCACCAGCCCAAGAAGCAGAGACTGTGTGGCCATCCTTAATGGGATGATCTTCTCAAAGGACTGCAAAGAATTGAAGCGTTGTGTCTGTGAGAGAAGGGCAGGAATGGTGAAGCCAGAGAGCCTCCATGTCCCCCCTGAAACATTAGGCGAAGGTGACTGATTCGCCCTCTGCAACTACAAATAGCAGAGTGAGCCAGGCGGTGCCAAAGCAAGGGCTAGTTGAGACATTGGGAAATGGAACATAATCAGGAAAGACTATCTCTCTGACTAGTACAAAATGGGTTCTCGTGTTTCCTGTTCAGGATCACCAGCATTTCTGAGCTTGGGTTTATGCACGTATTTAACAGTCACAAGAAGTCTTATTTACATGCCACCAACCAACCTCAGAAACCCATAATGTCATCTGCCTTCTTGGCTTAGAGATAACTTTTAGCTCTCTTTCTTCTCAATGTCTAATATCACCTCCCTGTTTTCATGTCTTCCTTACACTTGGTGGAATAAGAAACTTTTTGAAGTAGAGGAAATACATTGAGGTAACATCCTTTTCTCTGACAGTCAAGTAGTCCATCAGAAATTGGCAGTCACTTCCCAGATTGTACCAGCAAATACACAAGGAATTCTTTTTGTTTGTTTCAGTTCATACTAGTCCCTTCCCAATCCATCAGTAAAGACCCCATCTGCCTTGTCCATGCCGTTTCCCAACAGGGATGTCACTTGATATGAGAATCTCAAATCTCAATGCCTTATAAGCATTCCTTCCTGTGTCCATTAAGACTCTGATAATTGTCTCCCCTCCATAGGAATTTCTCCCAGGAAAGAAATATATCCCCATCTCCGTTTCATATCAGAACTACCGTCCCCGATATTCCCTTCAGAGAGATTAAAGACCAGAAAAAAGTGAGCCTCTTCATCTGCACCTGTAATAGTTTCAGTTCCTATTTTCTTCCATTGACCCATATTTATACCTTTCAGGTACTGAAGATTTAATAATAATAAATGTAAATACTGTGAAGTGTGTGTGATTTTACAATGGACTTATGGTTGGTGGGAAAATTCAGCATGGAAATGCTTTTCAAAATATGATAGCGGTCATTATTTTGATTGTGCCTTACTGAAAGTTTTTGGGGAATTTACAAGAGTACTGATTACATGATTATCTGGAGAAAATAAGATGTCTTTGAAATACGTGTTGGCTTCAAGAAAACAGTTTTAACGTTTTCCTAAAATGAAATCTTTTGAGGTGAGCTTATGGCATCAACACATGGTTGATGAGGAAGCTGAGTTGCATTAGTGCACATGATTTCCAGTCAGGTCATGGGAAATGAACAGAGACAGTGACATCTTTGTAGCTGCTCCTTTGTGAGGCACTTCTTTCTTGAGACGACTCCATGCACAAATATAACAGGGATCATTGGGAATGACACCATCACAGCCACCAAGTTTATTGGTTTACTGATAAATCAATTTTGAGGGTTTTATGCTAGAAAAGATAACATTATAAATCTTTGTTTTTCAACAGTGGAAACTGAGGTGCTTCAGTTTTGTTTTTCATAAACATCTATCTCATGGTAAAATGACGTATAGTAGCAATCATATGATAGAAAGAACACATTGGTGCTCATTTTCATAAACTTCATTTTGTTAGATTGTCACTTAGCAAAGACTATTGCGGATTCTTCCTTGAGAACTTTCCTTTCAATTTTCTGTTGATTTCCTTAAAATTTTCTTCAGGGTCGAGCAAGTTCTGTTGATAtattgtgtcatgcaaagaaaactgtatttgtggttagaaaatgaagattttagacctcttattctgatttacttattaggcaagtcactttacttcatgaaacctatttcactgcatatgaagtagaaataattataatttcctcataatgttactgttagctgaaataaagtaaatgtgaaatca

Publications

PMID - Link Title
No publications available for this retrocopy