Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UQCRFS1P1
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Plot displaying the genomic locations of a retrocopy (in chr22) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr22:39875295-39876516  UCSC
Coordinates (T2T) chr22:40346288-40347509  UCSC
Coordinates (hg19) chr22:40271299-40272520  UCSC
Strand +
Parental Sequence NM_006003.3
Parental seq. overlap 1205 bp
Parental seq. overlap (%) 39%
Genomic Region Intragenic (ENTHD1)
Retrocopy Summary UQCRFS1P1, located on chr22:39875295-39876516, is a retrocopy of the parental gene UQCRFS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UQCRFS1
Full Name ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Also known as MC3DN10|RIP1|RIS1|RISP|UQCR5
Coordinate chr19:29205320-29213151
Strand -
Gene summary Predicted to enable oxidoreductase activity. Involved in mitochondrial respiratory chain complex III assembly and respiratory electron transport chain. Located in mitochondrion. Part of mitochondrial respiratory chain complex III and mitochondrial respiratory chain complex IV. Implicated in mitochondrial complex III deficiency. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes UQCRFS1P2
Bonobo Pan paniscus LOC100974890P2
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Related Sequence

>UQCRFS1P1
GGTCGGTCGCAGCCCGCTCGGGCCCGTTCGCGCCCGTCCTGTCGGCCACGTCCCGCGGGGTGGCGGGCGCGCTGCGGCCCTTGGTGCAGGCCACGGTGCCCGCCACCCCGGAGCAGCCTGTGTTGGACCTGAAGCGGCCCTTCCTCAGCCGGGAGTCGCTGAGCGGCCAGGCCGTGCGCCGGCCTTTGGTCGCCTCCGTGGGCCTCAATGTCCCTGCTTCTGTTTGTTATTCCCACACAGACGTCAAGGTGCCTGACTTCTCTGAATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGTCTTCAAGAGAAAGCACCGAGGCTAGGAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTACTGTGGGTGTCGCATATGCTGCCAAGAATGCCGTCACCCAGTTCGTTTCCAGCATGAGTGCTTCTGCTGATGTGTTGGCCCTGGCGAAAATCGAAATCAAGTTATCCGATATTCCAGAAGGCAAGAACATGGCTTTCAAATGGAGAGGCAAACCCCTGTTTGTACGTCATAGAACCCAGAAGGAAATTAAGCAGGAAGCTGCAGTTGAATTATCACAGTTGAGGGACCCACAGCATGATCTAGATCGAGTAAAGAAACCTGAATGGGTTATCCTGATAGGTGTTTGCACTCATCTTGGTTGTGTACCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACACTATGATGCATCTGGCAGGATCAGATTGGGTCCTGCTACTCTCAACCTTGAAGTCCCCACGTATGAGTTCACCAGTGACGATATGGTGATTGTTGGTTAGAGACTTGGACTCAAGTCATAGGCTTCTTTCAGTCTTTATGTCACCTCAGGAGACTTATTTGAGAGGAAGCCTTCTGTACTTGAAGTTGATTTGAAATATGTAAGAATTGATGATGTATTTGCAAACATTAATGTGAAATAAATTGAATTTAATGTTGAATACTTTCAGGCATTCACTTAATAAAGCCACTGTTAAGCACTGTTATGCTCAGTCATACACGCGAAAGGTACAACGTCTTTTAGCTAATTCTAATTAAAAATTACAGACTGGTGTACAAGATACTTGTGAAATCTGTAACTGACTTTATTTTCTTGCCCAAATATTTGCTTCCTGCTTTGCGTCAGGGACGCAGATTCTGCAAGGTCATTGTTGGGATGAAGTAAAATTAACGGGTCAT
>NM_006003.3
GTGACCGGCTTGGCGGTTGGAGCGGCTGTCGCCATGTTGTCGGTAGCATCCCGCTCAGGCCCGTTCGCGCCCGTCCTGTCGGCCACGTCCCGCGGGGTGGCGGGCGCGCTGCGGCCCTTGGTGCAGGCCACGGTGCCCGCCACCCCGGAGCAGCCTGTGTTGGACCTGAAGCGGCCCTTCCTCAGCCGGGAGTCGCTGAGCGGCCAGGCCGTGCGCCGGCCTTTGGTCGCCTCCGTGGGCCTCAATGTCCCTGCTTCTGTTTGTTATTCCCACACAGACATCAAGGTGCCTGACTTCTCTGAATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGTCTTCAAGAGAAAGCAGCGAGGCTAGGAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTACTGTGGGTGTCGCATATGCTGCCAAGAATGCCGTCACCCAGTTCGTTTCCAGCATGAGTGCTTCTGCTGATGTGTTGGCCCTGGCGAAAATCGAAATCAAGTTATCCGATATTCCAGAAGGCAAGAACATGGCTTTCAAATGGAGAGGCAAACCCCTGTTTGTGCGTCATAGAACCCAGAAGGAAATTGAGCAGGAAGCTGCAGTTGAATTATCACAGTTGAGGGACCCACAGCATGATCTAGATCGAGTAAAGAAACCTGAATGGGTTATCCTGATAGGTGTTTGCACTCATCTTGGCTGTGTACCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACACTATGATGCATCTGGCAGGATCAGATTGGGTCCTGCTCCTCTCAACCTTGAAGTCCCCACGTATGAGTTCACCAGTGACGATATGGTGATTGTTGGTTAAGAGACTTGGACTCAAGTCATAGGCTTCTTTCAGTCTTTATGTCACCTCAGGAGACTTATTTGAGAGGAAGCCTTCTGTACTTGAAGTTGATTTGAAATATGTAAGAATTGATGATGTATTTGCAAACATTAATGTGAAATAAATTGAATTTAATGTTGAATACTTTCAGGCATTCACTTAATAAAGACACTGTTAAGCACTGTTATGCTCAGTCATACACGCGAAAGGTACAATGTCTTTTAGCTAATTCTAATTAAAAATTACAGACTGGTGTACAAGATACTTGTGAAATCTGTAACTGACTTTATTTTCTTGCCCAAATATTTGCTTCCTGCTTTGCGTCAGGGACGCAGATTCTGCACGGTCATTGTTGGGATGAAGTAAAATTAACGGGTCATCTAAGTGTCTATGGCATTGACAGAAACAGTAGTATCTAGGTATTCCTTATTTACCGGACTTGGTAAGAGTCCTGGCTATGCATTTCCTCCCTACTGTGTAAGCCGTGTGATAATCTCAACACTAATCTGTGGGAAAGAGTCCTGAATGAGGCATTAGTAGCTCTGAGGGTTTATCTTCACGTCTGGTCTGCTGGTTTTTCTCCTTAAGTGACAGGCCAGGAAATTTTATTAGTCCCTTATGAGTGTAAATTAGTACTTAATCCTTTAGTCTTAATAGGCAGTGATGGGATATTACCTGAGAGAAACTTTCCAAAATGAGAGTGCTCTGCCATTTCGTTCATTTTGTGTGTGGTTCATCATGTCCCCAAAGTTCCTGCATCCACTCTATCAGGAGGCAGAAAGGGAGCATCTGAGACCTAATACTGCCTGCATGCAGAAGTGGTCCTGCTGGGTTTGTTTCTGTAGTGATGACACTTTGAATGTTTTTTCCTGTTGGGTTTACAGTCACTCAGCACTTTTCACTGTAAGATGGTGTGGAACCAGACGCAGAGCACATCGGAATTCACATCCTATTCTGCCTCCAATTACACAGGTGAAACAAGACTAAGGTCCATTTTCCCCTGGGAGTTGGGAGTGGGCTTTGTCCTTTGAGAATCACAGTCACTTTTTGATGTGTTTGTCTTTGCTGTTTAGAGGTGGACCAGTCGTGCTTTACTGAGTCTACCTGATAATCTCATGTACACTTTTTTAAAATGGCAAAAATGGTTAGGTTGGGTCTGCCCAAAGGGAACTGACCATCCAGGATTCCAGCCTTTGATGTTAATAGCTAGGTGTTGACAGAAAAAAGAAAATGTCAAACTTTCTATGCTTATGAGTAGATACTAGTCTTTGCTTCATTTTTACCATTCTAGAAATGAAATTAGCATGTGTGATAATTGGTGGGACACAGAAGTATTTTATATTCTGTGTCTCTAGATAGTGGAGGCACTCTTCGGATTGGGGGTTGGAGGAAGGGTTGGTGGCAGAGTTGGAATGTGAAACATTGAGTTGTGAGGGGAACACAGGTCCACACACTAAAAAACCTGTGCTGCCAAAAATGTCAACAGCACCCCCTCCCTATAGAGAAATACTGATAACCTATATCACCTCCCACCCTGAAGTGATACCTTGAAATTCTACATGGCAGTGGAGGACAGAAGTAGGAAGTTTGCAGGTCTCTAGGTACTCACTTAGTGCCGGAATTGCTATATTTGGTGGCTGCTTACTTCATCTTTCATATTTAGAGTTTGATGGTGGGATGCTGTTAAATTGTAGTAGACCATTTAGTTTTTAAAGAAGGCTTTGTTCCACAAGTGACAGGACAAGTCAAGTCACTTCATGCTGTTTTGCTGAATGGATACGGCAGACCTGTGTTAACATTTTTACCATTCTGTGAAAACAAAATCCTAGATAGTAGGAGAAAATTACTTACAGAATAAACCTGACCAGCTAGCACCCTGACATCAGATCATTAACCTACTGCATTTTATTGGGGATAATTCTTGGGACAATCTTGAGAGCCAAGTGTTTTCATTATGCTTTAAAAAGTGTTATAAAAATGGCCTTTTTGAAAATGTTGCATTATTTGTTAAAGATAACATCAAATTTTCTTTGGTCTTTCTGAGCATACCTTTGTAAAAACTTTGACTCAATCTGAGTGTATAGAGGGCATTTGTCCTGACTGGATCAAAATGTGCTTTAGTACCCTCATTTTTCTAAACTGTAGGAACATACTATTTAAATATCAGAAGTAATTCTTCATTCTCACAGTACTAAatttcattttctgta

Publications

PMID - Link Title
No publications available for this retrocopy