Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SMIM7P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:35218029-35219605  UCSC
Coordinates (T2T) chr2:35223196-35224771  UCSC
Coordinates (hg19) chr2:35443095-35444671  UCSC
Strand -
Parental Sequence NM_024104.4
Parental seq. overlap 609 bp
Parental seq. overlap (%) 38.5%
Genomic Region Intergenic
Retrocopy Summary SMIM7P1, located on chr2:35218029-35219605, is a retrocopy of the parental gene SMIM7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SMIM7
Full Name small integral membrane protein 7
Also known as C19orf42
Coordinate chr19:16646148-16660144
Strand -
Gene summary Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SMIM7P1
Bonobo Pan paniscus SMIM7P1
Gorilla Gorilla gorilla SMIM7P1
Orangutan Pongo abelii SMIM7P1
Gibbon Nomascus leucogenys SMIM7P1
Green monkey Chlorocebus sabaeus SMIM7P1
Crab-eating macaque Macaca fascicularis SMIM7P1
Rhesus Macaca mulatta SMIM7P1
Baboon Papio anubis SMIM7P1
Golden snub-nosed monkey Rhinopithecus roxellana SMIM7P1
Marmoset Callithrix jacchus SMIM7P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SMIM7P1
TGCTGGTAGGTTGAAAAATGTTTGCCAAGATGTGCACAGTCTCCCAGCCACCTCACAGTTTTCAAAGATATTTTCACTTTGGTGACTGAATTGGAATGCTATTTACTGAAGGGGTTTCAGGAGGGTTTATATAAGGGGCTGTGATAAAATTGCATTTCCCATAGATAAAAGAACATGGTGAAATCATTTCATCATATTGGAATGCCTCCTCTACCAAGCATTCACGAGAAACCTGTTTCTGGATATTTATTGGCTTATTTTTAATAGCCGTCCTTTTGGTAAGAATCATATAGATTTTTAAAACCATTTTTTAATCCAGGGATCTGAGCAGAAAGGTTGGCTTTTAAGTTTAACACAGCCTCATTTTTGAACAATGTTTATAAGTCACACGGACATTCAGCGTTACTTGCTGAAATTGACAGCATCTGGGGTCAGCCAGGAGCACTGTGACCAAATTCCTTTCCCATGTGAACAGGGTCCACTTGGCCACTCAGTGCAGCTGAAATTATCCCTAAGACTTTAAGAAGAGGGTCACCTGAAACGGGGACACCAGCCTTCCTGCTCAGACACTAAACTGTTAGCAAAAAGGAAGAGATAGTTCCAGGTGAAGTATTTCCACAGAAGAGGATGATTGGAGACATCCTGCTATTTGGGACATTGCTGATGAATGCTGGGGCAGTGCTCAACTTTAAGCTGAAAAAGAAGGACATGCAGGGCTTTGGGAAGGAGGCATGGGAGCCCAGCACAGGTGACAACACGAGGGAATTCTTACTGAGCCTCAGATACTTTTGAATCTTCACCATCCTGTGGAACGTCTTCATCATGTGCTGCATGATTGTGCTGTTTGGCTCCTGAGTCCCAGATACGGAACCAGGAACTCATCTTCTCAGATGCTGAGTCTCTCTCTTCCTCCATTCCTGATGACTTCAAGAATGCTTTTAACCAGAAAACTAATAATCTTCACAGGAAGCCCAAGCTCTTGAt
>NM_024104.4
GCTTCCGGTTCTGACGGACGCTTCGGCCGTAACGATGATCGGAGACATCCTGCTGTTCGGGACGTTGCTGATGAATGCCGGGGCGGTGCTGAACTTTAAGCTGAAAAAGAAGGACACGCAGGGCTTTGGGGAGGAGTCCAGGGAGCCCAGCACAGGTGACAACATCCGGGAATTCTTGCTGAGCCTCAGATACTTTCGAATCTTCATCGCCCTGTGGAACATCTTCATGATGTTCTGCATGATTGTGCTGTTCGGCTCTTGAATCCCAGCGATGAAACCAGGAACTCACTTTCCCGGGATGCCGAGTCTCCATTCCTCCATTCCTGATGACTTCAAGAATGTTTTTGACCAGAAAACCGACAACCTTCCCAGAAAGTCCAAGCTCGTGGTGGGTGGAAAAGTGTTCGCCGAGGTGTGCATGGTTTCCCAGCCACGTCCCTGTTTTCAAAGATAGTTTCACTTTGGTCTCTGAATTGAAATGCTGTCTACTGAAAGGGTTTCAGGAGCGTTTATGTAAGGGGCTGTGATGAAATTGCATTCCCCATAGATAAAAGAAAAATCATTTCTATCCAGAGATCTGAGCAGAAGGATTGGCTTGTTAGTTTAACACAGCCGTATTTTTGGACATTCAGTGTTACTTGCTGAGTCTGACAGCCTCTGGGCCCGGCCAGGGGCCCTGTTAACAAACTGCTTTCACATCCCAACAGGGTCTGCTTGGCCACTCAGTGCAGCTGCGATTAACCCTAAAGGCTTTAAGGAACGGGCCACCTGTAACAGAGACACCAGCCTTCCTGTATAGACACTAAATTGTTAGCAAGAGTGTTGAGCTAGTTCCTGGTGAAGTGTTTCCACAGAAGACATGTGGAGCAGTTGTGGGGATATTAAGGGAAACTTTCCTCTGCCTTGACCCCTTTGTTAAATAAAATGACTTTGGGAGCCATTCATTGTACAGTTGCAGGAATGAGAGTGATTTTATGATGTGGTACATTGGGACCATGTTCTAAAACCTTGGGTTTCTGAGTCTGCTTTTTGAGTAGGTGATTTTGAGGTTGAAAAACCAGGGGCCTTCATCTAGGAAATACAGCATTTTCCAGAAGCTTCTTTGAAAGGGAATCCTGGTTTTGTTGCCAAAATGAAACGCCCGGGGTTGGCGCTGAATCCCACAACTGTGTGATTTGCTTGTTGAGTTTTTTGTTGTCTGGTTTTTTTGTTTGTTTGTTTATACCAATAAGAATGAGCCTGAATGTTGGTGGTTTTTGAAATCCTGACTTGGAGGTAAACCTGGAGGAAGGAAAAAAAGTAAATATGCAGGCTTTTAGGACTGAGTAGCCTTGAAAATAAACCTCATTTCTAAAAAGGA

Publications

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