Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF607P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr2:69844830-69844983  UCSC
Coordinates (T2T) chr2:69857097-69857250  UCSC
Coordinates (hg19) chr2:70071962-70072115  UCSC
Strand -
Parental Sequence NM_032689.5
Parental seq. overlap 129 bp
Parental seq. overlap (%) 3%
Genomic Region Intragenic (GMCL1)
Retrocopy Summary ZNF607P1, located on chr2:69844830-69844983, is a retrocopy of the parental gene ZNF607. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF607
Full Name zinc finger protein 607
Also known as -
Coordinate chr19:37696363-37720165
Strand -
Gene summary Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF607P1
Bonobo Pan paniscus ZNF607P1
Gorilla Gorilla gorilla ZNF607P1
Orangutan Pongo abelii ZNF607P1
Gibbon Nomascus leucogenys ZNF607P1
Green monkey Chlorocebus sabaeus LOC103234565P1
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF607P1
TTCTGGTAGAGAAACCCTGAGGACTGATTGGCTTTTGCTTGTCTAAAACCATGGCCTGTGAATTTGTAACATTCAGGGACATGGCCACAGACTTCTCTCATCAGGAGTGGGAATACCTTGACCTGGTTCAGAAGACCTTGTACCAGGAGGTGAC
>NM_032689.5
GGCCACTCCCAGAAGTCTCCGGGGCTCGAGCGGTGGGTGGGAGGCGCGGTCCAAGTGGTCGCTGCCGTATTTCTCGTAGGTTTTTAGGATTCTGGACTCCATTTCTCACCGGTACCTGCGGTCCTGACTGTTCTGGCTTGGACTACATATTACAAAGGCAACGGAGAAAACTTGGACCCCTGGCTCCGGTTCCGGGACCTTTTGGTTCCACCTGAAGAAGGCGGCGCAGGTCACTGCGGGAGCCTCTGCAGCCCCAGCCCGCCGCCCGCGTGGTACCCTGCGTGGCGGTGAGAGTGGGGCTGCAGGAGGCGCTCAGAGCGCGGAGGCCCCCAGGCGGGCCGGGCGAGTCTCCCGCCTCCTCAGGCCCTAGGGTGCTGGAGCTGCGGAGGAGGGGCCCGTCTCTAGGAGACAGGCGGGGAGCGTGAGAGACCGCGCAGCGGCGACAGGACCGGCTTGCCTGTGTGACGTGGGTGCAGTTGCGGGACTGTGAGGGGTCTTGGTTCTTTTGACTTTGCTCTTCTGGTAGAGAAACGCCAAGGACTGATCAACTCTTGCCAGTCTCAAACCATGTCCTATGGATCAATAACATTCGGGGATGTGGCCATAGACTTCTCTCATCAGGAGTGGGAATATCTCAGCCTGGTTCAGAAGACCTTGTACCAGGAGGTGATGATGGAGAACTATGACAACTTAGTCTCATTGGCAGGACATTCCGTATCTAAGCCAGATTTAATCACCTTATTGGAGCAAGGAAAAGAGCCATGGATGATTGTGAGGGAAGAAACAAGAGGAGAGTGTACAGATTTGGATTCAAGATGTGAAATAATCAGCGATGGGAAAATGCAGCTTTATAGGAAACACTCATGTGTTACTCTCCATCAGAGAATTCATAATGGACAGAAACCATATGAGTGTAAGCAATGTCAGAAGTCCTTTAGTCATCTTACAGAACTCATGGTACATCAAACAATTCATACTAGTGAGGAACCTGATCAATGTGAAAAGTTTAGGAAGGCATTTAGCCATCTTACAGACCTTAGAAAGCATCAGAAAATTAATGCTCGTGAGAAACCTTATGAATGTGAAGAATGTGGGAAGGTCTTCAGTTATCCTGCAAACCTTGCTCAACATGGGAAAGTTCATGTTGAGAAACCCTATGAATGTAAAGAGTGTGGGGAAGCTTTTAGGACTAGCCGTCAACTTACTGTACATCATAGATTTCATTATGGTGAGAAACCCTACGAATGTAAGGAATGTGGCAAGGCCTTTAGTGTGTATGGACGACTTAGTCGACATCAGAGTATTCACACTGGTGAGAAGCCCTTTGAATGTAACAAATGTGGGAAGTCCTTTAGGCTCAAAGCAGGCCTTAAAGTACATCAGAGTATTCATACTGGAGAGAAGCCACATGAATGTAAGGAATGTGGAAAGGCCTTTCGTCAGTTTTCCCACCTTGTGGGTCATAAAAGAATTCATACTGGAGAAAAACCCTATGAATGCAAGGAATGCGGGAAGGGCTTTACATGTAGGTATCAACTTACCATGCATCAGAGAATTTATTCAGGGGAGAAACACTATGAATGTAAAGAAAATGGGGAGGCTTTTAGTAGTGGCCATCAACTTACTGCACCTCATACATTTGAAAGTGTTGAGAAACCTTATAAGTGTGAGGAATGTGGGAAAGCCTTTAGTGTGCATGGACGACTTACTCGACATCAGGGTATTCATAGTGGTAAGAAACCCTATGAATGTAACAAATGTGGGAAGTCCTTTAGGCTCAATTCATCCCTTAAAATACATCAAAATATTCATACCGGTGAGAAACCCTACAAATGTAAGGAATGTGGGAAGGCCTTCAGTCAGCGTGCACACCTTGCCCATCATAACAGAATTCATACTGGTTACAAACCCTTTGAATGTAAAGAATGTGGGAAGTCCTTTCGTTGTGCCTCATATCTTGTTATACATGAGAGAATTCATACAGGAGAGAAACCCTATGTATGTCAAGAGTGTGGGAAGGGTTTTAGTTATAGCCATAAACTCACTATACATCGCAGAGTTCATACTGGTGAGAAACCTTATGAATGTAAGGAATGTGGGAAGGCCTTTAGTGTATCTGGACAACTTACTCAGCATCTGAGTATTCACAGTGGTAAGAAACCCTTTGAATGCAACAAATGCGGGAAGTCTTTTAGGTTCATTTCTGTACTTAAAGCCCATCAGAATATTCATAGCGCTGAGAAACCCTACGAATGTAAGGAATGTGGCAAGGCCTTTCGTCATGCCACAAGCCTCATATATCATGACCGAACTCATGCTGGTGAAAAGTCCTATGAATGTAAAGAATGTGGGGAAACTTTTAGTCATGCTTCACATCTTATTATTCATGAGAGAATTCATACCAGTGATAAACCCTATGAATGTAAAAGATGTGGGAAGGCATTTCACTGTGCCTCATATCTTGTTAGACATGAAAGCGTTCATGCTGATGGAAATCCCTATATGTGTGAAGAGTGTGGGAAAGCTTTTAATAGTAGCCATGAACTTAGTATACATCATAGAGTTCATACTGGTGAGAAACCCTTTAAATGTAACAAATGCAGAAGGTCCTTTAGGCTTAGATCCATCCTTGAAGTACATCAGAGAATTCATATTTGATAGAGAAATTGTGGCATATACAGGTAGTAAAGAAAGCACATTGTGTCAATGGATTTATCCCACTGAACAATTTGAATGAAGACAATGTGGAATGGCTTTGAGATACAGTTCAGTTTTTATTAGGCATCAATTTGTATTGGTGTGAACTTTTCAAAATGTAAATCATATATGCAGTTTCTTTGGTATGACCTGTGTTAACTCAGATTCAGAGAATTTATAATGTATTTTTTTAATAACATAAGAAAACTTTTCTGATATTCCTCTAGTTTTGGATTGCCAAAATATTCACAGTAGAGGAAAACTGAGAAAACGTAGGAAACCATTCTTTATACTTGCATGTAAACATCTTCCAGCAACAATCATTTATTGTTAAACCTGGAAAAAGCCATTACACAGGAAACCTCTGTTGATATAAGCGATGATGGGAAAGGCTATTTAGCCACTCTGCATATTTAATGCTCATGATCAACAtctgcttcctatagctgggatgatatgggggaagatatttatcccttctggggatcatatataaatgatgatagtagtacctacagtatagtgctgttagaattacatgagttaGATGTGGAGGTCAGAGTGGAAGCAGGTGTGAGAGGGTCCCGCAGAAGAAAACATGGCTGCCAAAGTGTTTGAGTCCATCGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCATGGTGAACTCTGCCTTATGTAATGTGGATGCTGGGCACAGAGCTGCCATCTTTGACCAATTCCGTGGAGTACAGAACATTGTGGTAGGGGAAGGGACTCACTTTCTCATCCCATGTGTACAAAAACCAATTATCTTTGACTGCTGTTCTCAACCACGTAGTGCGCCAGTCATCACTGGTAGCAAAGATTTACAGAATGTCAACATCACACTGTGCATCCTCTTCCGGCCCATCACTAGCCAGCTTCCTCGCATCTTCACCAGCATTGGAGAGGACTACGATGAGTGTGTGCTGCCGTTCATTACCACGGAGATCCTCAAGTCACTGGTGGCTCGCTTTGATGCTGGAGAACTAATCACCCAGAGGGAGCTGGTCTCCAGCCAGGTGAGCAACAACCTTATGGAGTGAGCAGCCACCTTTGGGCTCATTCTGGACGACGTGTCTTTGACACATCTGACCTTCTTGAAGGAGTTAACAGACAGGTGGCCCCCCAGGAAGCAGAGAGCGCCAGATTTGTGGTGGAAAAGGCGGCCATCATCTCTGCTGAGGGTGACTCCAAGGCAGCTGAGCTGATCGCCAACTCACTGGCCACTGCAGGGGACGGCCAGAGCGAGCTGTGCAAGCTGGAAGCTGCAGAAGACATTGCATACCAGCTCTCATGCTCTCGGAACATCACCTGCCTGCCGGCAGGGCAGTCCGTGCTCCTCCAGCTGCCCTAGTGAGGCCCCAGCCTACCTGCACCTCCGTGAGGCAACTGGGCCACAGCCCCGATGATTCGTAACACCACCTTTCGCCCTCACCCCAGAAATCACTGAAATTTCATGATTGGCTTAAAGTGAAGGAAGTAAAGGTAAAATCACTTCAGATCTCTAAAAAACAAAGAATTACATGAGTTAGTACATGAAAAAATTATGGGAAACTACATGAAATATACTGTTACGTTCAATAAACATTAGCTTCTGTATATAA

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