Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CSP2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:107326429-107329320  UCSC
Coordinates (T2T) chr3:110046131-110049022  UCSC
Coordinates (hg19) chr3:107045276-107048167  UCSC
Strand -
Parental Sequence NM_004077.3
Parental seq. overlap 2548 bp
Parental seq. overlap (%) 85.8%
Genomic Region Intergenic
Retrocopy Summary CSP2, located on chr3:107326429-107329320, is a retrocopy of the parental gene CS. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CS
Full Name citrate synthase
Also known as -
Coordinate chr12:56271699-56300330
Strand -
Gene summary The protein encoded by this gene is a Krebs tricarboxylic acid cycle enzyme that catalyzes the synthesis of citrate from oxaloacetate and acetyl coenzyme A. The enzyme is found in nearly all cells capable of oxidative metablism. This protein is nuclear encoded and transported into the mitochondrial matrix, where the mature form is found. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CSP2
Bonobo Pan paniscus CSP2
Gorilla Gorilla gorilla CSP2
Orangutan Pongo abelii CSP2
Gibbon Nomascus leucogenys CSP3
Green monkey Chlorocebus sabaeus CSP3
Crab-eating macaque Macaca fascicularis CSP1
Rhesus Macaca mulatta CSP1
Baboon Papio anubis CSP1
Golden snub-nosed monkey Rhinopithecus roxellana CSP1
Marmoset Callithrix jacchus CSP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CSP2
TCAGCTGCCTCCTTTCAACCTTGTCCACCCATTGCGGCCTCTGGTGCCGCAGTGGTGGTTCCTGTTTCTGCCACAGCTCTCTCCCCTTCTTCCCTCTCCACCAGATCGCAGAGTTCACTCACCATGGTTTTACCCAAGTGGCTGCCAGGCTCTTGGGAAGCAACAGTGCATCTTGTCTTGTTCTTGCTGCCTGGCATGCCAGTGCTTCCTCCAAGAATTTGAAAGACATATTGGCTGACCTGATAGTTAAGGAGCAGGCCAGAATTAAGACCTTCAGGCAGCAACATGGCAAGAAGGTGGTGGGCCAAATCACTGCAGACATAATGTATGGCGGCATGAGAGGCATTAAGGGATTGGTATATAAACATCAGTTCTTGATCCTGATGAGGTTATCTGTTTCCGAGGCTTCAGTATCCCTGAATACCAAAAACTGCTACCCAAGACTAAGGGTGGGGAAAACCCCTACCCAGGGGCTTATTTTGGCTGCTGGTAACTGGACAGATCCCAAGAGAGGAACAGGTATCTTGGCTTTTAAGAGAGTGGGCAAAGAGGGCAGGCAGCTCTACCTTCCCATGTGGTCACCATGCTGGACAACTTTCCCACCAATCCACACCCATGTCTGAGCCCACTGCAGCCATGGCAGCCCTAAACAACTTTGCCCGAGCATATCCAGAGGGTGCCAGTCAAACCAAGTACTGGGAGTTGATTTATGAAGACCATGTGTGTCTAATCACAAAGCTACCTTGTATTGCAGAAAAGGTCTACCAAAATCTCTGTGGAGAGGGCAGTGGTATTGGGGTCACTGACTCTAAGCTGGACTGGTCCCACAGTTTCACCAACATGTTAGGCTATACTGATGCTCAGTTCACTGAGCTCATGCACCTGTAGCTCACCATCCACAGTGACCATGAGCACAGCAATATAAGTGCTCATGCCAGGCATTTGGCAGGCAGTACCCTTTCAGACCCTTCCCTGCCCTTTGCAGCAGCCATGAATGGGCTGGCAGTTCCTCTACATGGACTGGCAAATCAGGAAGTGCTTGTCTGGCTAACACAACTACAGAAGGAAGTTGGCAAAGATGTGTCAGATGAGAAGTTACAAGACTACACTGAACTCGAGATGGGTTGTTCCAGGCTATGGCCATGCAGTACTAAAGAAGACTGAGCCACAATGTACCTGTCAGCGAGAGTTTGCTCTGAAACATTGCATAATGATCCCATGTTTAAGTTGGTTGCTCAGCTATACAAGATTGTGCCCAATATCCTCTGACAGTAGGGTAAGGCCGAGAATCCTGGGCCCAATGTAGACGCACATGGTGGGTACTATAGCATGACAGAGATACATTGCTACGCGGTCCTGTTTGGGGCATCACAGGCATTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCCGAGGCTTCCCTCTAGAAAGACCCACGTCCATGAGCACAGGTGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAAAACTGGAGACTGGGGGAAACTGACTATCAGAAAGTGAGGAGGCCTTAAAAAAATGTATATTTTTGTTTCAGGGGGCCTTTTAAAGACTTAAGATTAAATTGTATCTGAGGCACTGATAATCTGTTTGAGGTTAAAATATTAATTAAGACTTTAAAAAATGAAAAATGAGCCCTTCTTCCCTAACCAGCTCCCTTCCCCTGCCCAGTGTTAGTTGCCCATCAACTGTAGGATGACCAGAACTAATGCATGTGCTGTGGGTTAGGTTTGGTCCCTCTCTATCTTTAGAGTGAGAATGTGGCTCCTCTTTCTCTGGGTCAAAGCCAGTTGCAGAGAATCTGCAGTCACTTTGGAGCTTTCGCTTCTTCTCTGCCAAACCTCAACAAGCCAGCTAACCAAGACTCTGCCGCTTCTGTTTCCATAGGAATCACGTTGGATAGTCAGTGGTACCAAGCCCCTTGGCACTCTGTCATGCACACGAACACCTCCTAGCAAGACCTTTTGATTAGCCAGACAGGCATGCTTTGGCAAATTTTTTATGATACCAAGTGACCATAAAGGCATGGCATTTGTGGTGACTGGCACCCAATGTTAGATTCTATTTCAATTTTTTAAACTATCCAATTAAAATTAAGGCTTGGGAGTGTTCTGTTTCCCATTACTTTAATATTTACCTCCTCCCAGACTTTCCACACCTACTGCATCTCAAGCTGAGGATGTTCCAGACCTCCCACTCTTGGTCCCTACTAGTGACCTCTCAACAGATCTGTGGTCCCAGTCATTGGGTTTTATCAGTGCTTAATATGAACTAAGGTGTTTTACTTCCACAGAACACAAGCCACTACCCTCTGACCTTCCCTTGCCCTTCTAATATGTTGTAGGGCATAGAACAGGGACTCAGGAATGACCAGCACGGTATTTTCAGAGTATTTTCATGGTATTTTCAGAGTCTGGTCCCTGGGGTATTAGCACCTCTTTTTGAACAGGGAATTGATTCAAGATTGGACATGATCTCCTCTGATTATCATGTCCTGGGGCTGAGGGGATTAAAAATAGTAAGCCTCCCTCCTCATCTGCCGCCTCAAGAAAATGCCCCCTTAATTATCAACATCCTTTTCCTGCCCCTTCCCCGAGAGCTCACAGTACAATGTTTGTTTTAGAGGCCCCATTTGCACAGGTTTTCAGCAACTTGGAATGCTCTGCTGCCTTTGAGGTGGGCTTGAGATACACTCCTGCTGTGCCCCCTTCTTCCCTCCAAACTCCTGCCTGTGTTTGTGCGGATCCTCAATCCCAGAACCACGGTGTTCAGTTGGACACACATAAACCCCTGGGTAACCATCAAGTCATGATGCAGACTTCAGGCGGTTCTGTATAAAATGCAAAATAAACGTTTTTATTAACAAC
>NM_004077.3
CCTTCAGCCGCCTCCTTTCAACCTTGTCAACCCGTCGGCGCGGCCTCTGGTGCAGCGGCGGCGGCTCCTGTTCCTGCCGCAGCTCTCTCCCTTTCTTACCTCCCCACCAGATCCCGGAGATCGCCCGCCATGGCTTTACTTACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCAGCCCGGCATGCCAGTGCTTCCTCCACGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACTTTCAGGCAGCAACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGATGTATGGTGGCATGAGAGGCATGAAGGGATTGGTCTATGAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTTTAGTATCCCTGAATGCCAGAAACTGCTACCCAAGGCTAAGGGTGGGGAAGAACCCCTGCCTGAGGGCTTATTTTGGCTGCTGGTAACTGGACATATCCCAACAGAGGAACAGGTATCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCCTTCCCATGTGGTCACCATGCTGGACAACTTTCCCACCAATCTACACCCCATGTCTCAGCTCAGTGCAGCTGTTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCACAGGGTATCAGCCGAACCAAGTACTGGGAGTTGATTTATGAAGACTCTATGGATCTAATCGCAAAGCTACCTTGTGTTGCAGCAAAGATCTACCGAAATCTCTACAGAGAAGGCAGCGGTATTGGGGCCATTGACTCTAACCTGGACTGGTCTCACAATTTCACCAACATGTTAGGCTATACTGATCATCAGTTCACTGAGCTCACGCGCCTGTACCTCACCATCCACAGTGACCATGAGGGTGGCAATGTAAGTGCCCATACCAGCCATTTGGTGGGCAGTGCCCTTTCCGACCCTTACCTGTCCTTTGCAGCAGCCATGAACGGGCTGGCAGGGCCTCTCCATGGACTGGCAAATCAGGAAGTGCTTGTCTGGCTAACACAGCTGCAGAAGGAAGTTGGCAAAGATGTGTCAGATGAGAAGTTACGAGACTACATCTGGAACACACTCAACTCAGGACGGGTTGTTCCAGGCTATGGCCATGCAGTACTAAGGAAGACTGATCCGCGATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTAATGACCCCATGTTTAAGTTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCTCTTAGAGCAGGGTAAAGCCAAGAATCCTTGGCCCAATGTAGATGCTCACAGTGGGGTGCTGCTCCAGTATTATGGCATGACGGAGATGAATTACTACACGGTCCTGTTTGGGGTGTCACGAGCATTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAAAGGCCCAAGTCCATGAGCACAGAGGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAAAACTGGAGACTGGGTGAAAGTGACTACCAGAAAGTGAGGAAGCCTAAATAAAAAGTATACTTTTGTTTCAGGGGGCCTTTAAAGACTTAAGATTAAATTATATCTGAGGCACTGATAATATGTTTGAGGTTAAAATATAAATTAAGACTTTAAAAGATGAAAAATGGTCCCTTCTTCCCTAATCAGCTCCCTTCCCCTGCCTGGTATGAGTTGCCCATCATACGCATGGTCCTGGAGGATGACCAGGACTAATGCATGTGGTATGAGTAGGTTTGGCCCCCTCACTATCTCTAGAGTGAGAATCTGGCTCCTGTTTCCATGGGTCAAAGCCGGTTGCAGAGAATCTGTAGTCACTTTGGAGCTTTAGCTTCTCTGCCAAGCCCTCAATAAGCCAGCAAACCAGGACTCTGCCCCTTCTGTTTCCATAGGAATCATGTTGGATAGTCAGCTGTACCAAGCCCCTTGGCCCTCTCCCATGCACACAAACACCTCCTAGCAAGACCTGTTGGTTAGCTGGACATGCTTTGGCAATTTTTTTATACTACCAAGTGACCATAAAGGCATGGCATTTGTTGTGACTGGCACCCAATGTTTGATTTTTTTTTTAAAACTATCCAATTAAAATTAAGGTCTGGGAGTGTTCTGTTTCCCATTACTTTAATACTCACCTCCTCCCAGACTTTCTACACCTGTTGCACCTCAGGCAGAGGATGTTCTGGACCTCCCCCTCTTGGTCCCTACTAGAGACCTCTCAACAGATCTGTGGGCCCAGTCATTGGGTTTTATCAGTGCTTAATGTGAACTAAGTTTTTTACTTCCACAGAATACAAGCCACTACCTTCTGACCTCCCCACCCCCCACCAACCCCCATCTTTTAATATGCTGTGGGGCATAGAACTCCGGAATGACCAGCATGATATTTTCAGAGTCTTGTCCCCGGGGTATTAGCACCTCTTTTTGAACAGGGAATTGATTCAAGATTGGACATGGTCTCCTCTGATTATCAGGTACTGGGGCTGAGGGCATTAAAAATAGTAAGCCTCCCTCCTCGTCCCCTGCCTCAAGAAATTGCCTCCTTATTTATCAACATCTTTTTCCTCCCTTTCCCTGAGAGCTCACAGTACAATGTTTCAGAAGCCCCATTTGCACAGGTTTTCAGCAACTCAGAATGCTCTACTTCTTTTTCTTTGAGAAAGGATTAAGATACACTCCTGCTGTGCCCCCATCTTTCCTCCAAACTCCTGCCTGTGTTTGTGTGGATACCCAGTCCCAGAACCACACTGTTGAGTTGGACACACTGTAAACCCCTGGGTAACTGTCAAGTCATGATGGAGACTTCAGGTTGTTCTGTATAAAATGCAAAATAAATGTTTTTATTAACAATG

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