Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ALG1L15P
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:156043992-156044946  UCSC
Coordinates (T2T) chr3:158818615-158819569  UCSC
Coordinates (hg19) chr3:155761781-155762735  UCSC
Strand -
Parental Sequence NM_001330504.2
Parental seq. overlap 892 bp
Parental seq. overlap (%) 23.7%
Genomic Region Intergenic
Retrocopy Summary ALG1L15P, located on chr3:156043992-156044946, is a retrocopy of the parental gene ALG1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ALG1
Full Name ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase
Also known as CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1
Coordinate chr16:5071825-5087379
Strand +
Gene summary The enzyme encoded by this gene catalyzes the first mannosylation step in the biosynthesis of lipid-linked oligosaccharides. This gene is mutated in congenital disorder of glycosylation type Ik. [provided by RefSeq, Dec 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ALG1P1
Bonobo Pan paniscus ALG1P1
Gorilla Gorilla gorilla ALG1P1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ALG1L15P
GGCTGTGACCATCTATGACAAGCCGGCATCTTTCTTTCAAGAGACACCTCTGGACCTGCAGCACCGACTCTTCATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCGCTCAGAACCTGAGGACCCAGCCAGGAGCGGTCGGCCTTCATGAAGCGGGATGCTGGGAGCGGGCTGGTGATGCGTCTCCATGAGCGGCCAGCCCTGCTGGTCAGCAGCACAGGCTGGACAGGTCTGCACGACCCATGGAACACTTGAGAGGACGAAGACTTCTCCATCCTGCTGGCAGCTTTAGAAAAGTTTGAGCAACTGACTCTTGACGAACACAACCTTCCTTCTCTCGTCTGTGTGATAACAGGCAAATGGCCTCTGAGGGAGTATTACAGCCACCTCATCCACCAGAAGCATTTCCAGCACATCCAGGTCTGCACCCCCTGGCTGGAGGCCGAGGACTACCCCCTGCTTCTAGGGTCGGTGGACCTGGGTGTCTGTCTGCACACGTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGACATGTTCGGGTGCTGTTTGCCTGTGTGTGCTGTGAACTTCAAGTGTTTACATGAGCTGGTGAAACATGAAGAAAACAGCTTGGTCTTTGAGGACTCAGAGGAACTGGCAGCTCAGCTGCAGATGCTTTTCTCAAACTTTCCTGATCCTGAGGGCAAGCTAAACCAGTTCCGGAAGAACCTGCGGGAGTCGCAGCAGCTCCGATGGGATGAGAGCTGGGTGCAGACTGTGCTTCCTTTGGTTATGGACACATAAATCCTGGGCCAGAGACTAAAACCCCAGGACCCCTGCTGTCCTTCCCGCAGCTTCTTCTCGGAGTCTCAGGGCAAACCCTTTCGAGCAGCGCCTCCCAGTGGCCAGAAGCTGAAATGACAGCAGTGGTGCCGCCGGGTGAATGAATTGGTTCTGTGACCCGGGG
>NM_001330504.2
CACGTGTCAGAAGTGTGTTAAGTGAATCCATTGCGTGGTCTCACGTAATTCTCCTAACTCCAAACCCCATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAGTTGGGCCCCGAGTTTTCCAGTACGGAGTCAAAGTTGTACTTCAGGCTATGTACTTGCTGTGGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTTCTCCAGAACCCCCCAGGTCTGCCTAGCATTGCTGTCTGCTGGTTCGTGGGCTGCCTTTGTGGAAGCAAGCTCGTCATTGACTGGCACAACTATGGCTACTCCATCATGGGTCTGGTGCATGGCCCCAACCATCCCCTCGTTCTGCTGGCCAAGTGGTACGAGAAGTTCTTTGGGCGCCTGTCCCACCTGAACCTGTGTGTTACCAATGCTATGCGAGAAGACCTGGCGGATAACTGGCACATCAGGGCTGTGACCGTCTACGACAAGCCCGCATCTTTCTTTAAAGAGACACCTCTGGACCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGCTCAGAACCTGAGGACCCAGTCACGGAGCGGTCGGCCTTCACGGAGCGGGATGCTGGGAGCGGGCTGGTGACGCGTCTCCGTGAGCGGCCAGCCCTGCTGGTCAGCAGCACGAGCTGGACAGAGGACGAAGACTTCTCCATCCTGCTGGCAGCTTTAGAAAAGTTTGAACAACTGACTCTTGATGGACACAACCTTCCTTCTCTCGTCTGTGTGATAACAGGCAAAGGGCCTCTGAGGGAGTATTATAGCCGCCTCATCCACCAGAAGCACTTCCAGCACATCCAGGTCTGCACCCCCTGGCTGGAGGCCGAGGACTACCCCCTGCTTCTAGGGTCGGCGGACCTGGGTGTCTGTCTGCACACGTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGACATGTTCGGGTGCTGTTTGCCTGTGTGTGCTGTGAACTTCAAGTGTTTACATGAGCTGGTGAAACATGAAGAAAATGGCCTGGTCTTTGAGGACTCAGAGGAACTGGCAGCTCAGCTGCAGATGCTTTTCTCAAACTTTCCTGATCCTGCGGGCAAGCTAAACCAGTTCCGGAAGAACCTGCGGGAGTCGCAGCAGCTCCGATGGGATGAGAGCTGGGTGCAGACTGTGCTCCCTTTGGTTATGGACACATAACTCCTGGGCCAGAGGCTAAAACCCCAGGACCCCTGCTGTCCTTCCCGCAGCTTCTTCTTGGAGTCTCAGGGCAAACCCTTTCGAGCAGCACCTCCCAGTGGCCAGAAGCTGAAATGACAGCAGTGGTACTGCCTGGTAAAAGAATTGGTTCTGTGACCCGGGAAGCTTTGGTTGGCCTTGATTTCTTCTCTGGAGGCTTGGAAACGCTTCCTCTCTTCTTCTGTTCTTCACGCCCCATGCCCCTGCTAGCGTATTACTGTTCTGTGACTTCCCTGTGACCTCTGCAGAACTCCTCATCCTGCGTTTGGTCTCCAGGTGTCCCCTTTCTGCCGTGTTCCTAACATTTTGATTCCTGTCTTGAAAAAAGCACCTGCTGCACCGTAAGCCCAGGGATGTGGCAGCTGCAGTGGGCTTGGCTTTGTGAGGAACTGAGTGTGTCCACGTTGGGGGAACATCATACTTGATACACACGTTTTTATTTGCACAAAGAAAATGCTATTTTTGGAGCCAGAATTTTCATGTCTGATTTATGGTGATTTTCTTAAGAACCAGAACTGCTGGCAGAAAGGGGGCACCCACACGCTTAGATAGCCGATGTCTTATTAGAGGGCAGTTTGTGGTTCCTGATTTGGAAATTAACATTCTCCAAACATTCCAGTCCAATGAAAGTTTTATCCGCTTTCCCATATAAAAATTCTTCCCATGAGAGTGACTTGATTCTCACAATCCCGTTGGAGTCGTGTGTGAGTCCTACAGGGTGAGATTCAGCATTGCCATCTCCAAGTGCTCTTCGTAGGGAAACAGTTTCTGCTCATGACGAGGTTCCACTTCCCATCTGATCCCGGCCCGGCCTGGAAACAGAGCACATGTGTTTGAGGATGGCGGTGTTTGGGGACAGGACATGAGGGTATTGTGTGGGGCTGCTAGGACAGGCCTGGCGGGGTAGGGGGGTGTCCAAGTCAGTTTACTTGGTTCACAGGTTCCCAGGCCCACCCAGGTGCCTAGAATTGGCCTCCAGGATGGGACCAGAAAGCTGGTTTTGCATAGAAATGGCTAGCAGCAGGCACCGTGCCGCTGTCCACTCTCTGCCTGTGTCTGCCCCAGCACTTGGCACAGCGGGACAGAAGCAGAGATCTGAATAGTCAACCCACTCTTCACAAAGCTTAGAAAGCggccgggcacagtggctcatgcctgtaatcccaacactttgggaggccaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaatcccatctctacaaaaatacagaaattagccaggcatgatggcgagtgcctgtaatcccagctacttgggaggctgaggtgggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgagtgacagggtgagactaagtctcaaaaaaaaaaaaaaaaaaCcacacgcaccacacacacacccacacacacacacaGCTTAGAAGGGGCTGCTGTTCTCATAAGCACAGATGTCTGAAGAGCCGTTAGCCAGAATGAttctttttttttgttttgagatatgatcttgttctgtcacccaggctggagtgcagtggcacagtcattgctcactacagcctcgactcctgggctctagcaatcctcccacttcctgagtagctgggatgacaggtgcgtgccaccatgccagtaatttttttattttgtagagatggggtcctgaacgcatggcctcaagtgatgctcctgcctcagcctcttttattatttgtttttagacgaagttttactctgttccccaggctggagtgcagtggcacaatctcagctcactgcaacgcctcccaggttcaagtgattctcctgcctcagtctcccgagtagctttgactataggcgtgcaccaccacgcctggctaatttttgtgtttttagtagagatggggtttcaccatgtgggccaggctggtcttgaactcgacctcccgtgatctgctcacctcagcctcccaaagcctcagcctcttacagtgttgggattacaggcgtgagacactgtgacccggGACGATTTTCAATCACAGTTTTTTGTTACGAGTGGAAAATGCGTATTTATAAGAATGAAGTAGTACAGACATGAATGTGTAGAAATCTCTATAATCCTGCCATCCAAGGATGGCACCTGTTAATGTGTATATcagggatgtccaatcttttggcctccctgtgccacactggaagaagaagaatcgccttgggccacgcataaaatacactaacactagcaatacctgatgagctaaaagaaaaaaaatcacaaaaaaacctcgtactgtttgaagaaagtttacagatttgcgttgggccgcaAGTTGGACAAGACTGCTATATGTATATTCTAGGTTTTCCCCTATAGGTATACTTATGTGAAAATGATTATTGTGATAAAttttgttttgagatgaa

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