Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KLF3P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:156976877-156978047  UCSC
Coordinates (T2T) chr3:159751442-159752612  UCSC
Coordinates (hg19) chr3:156694666-156695836  UCSC
Strand +
Parental Sequence NM_016531.6
Parental seq. overlap 1021 bp
Parental seq. overlap (%) 18.2%
Genomic Region Intragenic (LEKR1)
Retrocopy Summary KLF3P2, located on chr3:156976877-156978047, is a retrocopy of the parental gene KLF3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KLF3
Full Name KLF transcription factor 3
Also known as BKLF
Coordinate chr4:38664079-38701517
Strand +
Gene summary Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KLF3P1
Bonobo Pan paniscus KLF3P1
Gorilla Gorilla gorilla KLF3P1
Orangutan Pongo abelii KLF3P1
Gibbon Nomascus leucogenys KLF3P2
Green monkey Chlorocebus sabaeus KLF3P1
Crab-eating macaque Macaca fascicularis KLF3P1
Rhesus Macaca mulatta KLF3P1
Baboon Papio anubis KLF3P1
Golden snub-nosed monkey Rhinopithecus roxellana KLF3P1
Marmoset Callithrix jacchus KLF3P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KLF3P2
AAATTATATGAAATCAATAAAACCTAACAAGTATGGGTCATCTACTCTACACCATTACCTAATAAGTTTTTTCAGACCCGGGAAGGCTTATTGCATGGAATACAGATGGAGCCAGTGGACCTCACAGTAAACAAGTGGAGTTCACCCGTTTGGCTGGGAATTCTTCCTCTCTGAAGTTCCCATCCTTGAACTGGAGAGCCTCTCCAGAGCTGAGCATGCCTTCTTCCAGCCCATGATGAAAAATACTCACTCTCTTCTCTGGGCATGCAGCCCTTTGGCGTGCCACTCTCCATGCCACCGGTGATGGCAGCTGCCTTCTCCTGGCACAGAATACAGAGCCTAGGGATCCTGCCTGGTGGTGGTATGGTCTGTCCCCTTTATGTAAATGAGTTACCTCCAGCAGCCTCTCATTGTTTCCTTGTTGGAGGAAATGGAGAATTCAAATAGTAGCATGCAAGTACCTGTAATTGAATCATATAAGAAGCCTATAGCATAGGAAAAAAAATTGAACCTGTGATCAAACAACAGAGGACAGATTATTATCCTGAAGAAATGTCACCCCCCCTTAATGAACTCAGTGCCCACCCCTTGCAACAAGCATTGTTGCAAGAGAATCTCCCTTAGGTCATAGTGCAGCCTGGGAAGAGACCTTTACTGATGGAATTGGTGGATAACTCAAAGGAAGCAGAGGATACACAGATGTGATTATGACATATGCAACAAAGTATACACTAAAAGTTTCCACGTGAAATCATACAGAAGAACACACACAGGAGATAAACCCTACAAATGTACATGGGATGGATGCATATGGAAGTTTGCTCTGTCTGATAAATAAGACATTTCTGAAAACATACTGGAGTCAAATCTTTTTGGTGCCTGGACTGTAACCACAGCTTCTGTTCTGACCATCTTGCCTTCTACAGGAAACGCCACATGCTAGTCTGAATGCCTTTGTCTCCCACCTCAACATGACTCCCTACTCACCTGGCTCTTTCTCTATACTCCCACCATTATCTATCACACTTTTTACATGTACATTTTAATTTTGATTCAGCTGGTCTGATCCTCTGAATTTATATCATCCAAAACTTCCATATGGTCAGTAGCAGGTACTCTCTAATCCTCCCTCTCCTTACCATGGGTGACCTAAAAAATGAGAACTTTTTTT
>NM_016531.6
AGAGCGAGCGGCGCCGGCGTCATGTGACTGCCCGGAGTTGGTGCCAGGAGCCAGAGGGGAGCCAGGAGCGGAGCCGCGCGGAGCCGGGGCCCGAGCCGGAGCGCAGCGAGAGcgcccgccgcacgcgcgcccgtccccgtcccctgcggccgccaacgccgcccgGACTGGAGCCCTGACATTGCTGCGCTCGGGGGGCTCCAGGCAGCCCGTATCGGGGCCTTTATTTCTCGTCGGCGGCGCCCTGCACCGCGCCTCGCAAAGCCAAACACCAGAGCACCCTAGAAGGTTTAACTAAAAGAATGCTCATGTTTGACCCAGTTCCTGTCAAGCAAGAGGCCATGGACCCTGTCTCAGTGTCATACCCATCTAATTACATGGAATCCATGAAGCCTAACAAGTATGGGGTCATCTACTCCACACCATTGCCTGAGAAGTTCTTTCAGACCCCAGAAGGTCTGTCGCACGGAATACAGATGGAGCCAGTGGACCTCACGGTGAACAAGCGGAGTTCACCCCCTTCGGCTGGGAATTCGCCCTCCTCTCTGAAGTTCCCGTCCTCACACCGGAGAGCCTCGCCTGGGTTGAGCATGCCTTCTTCCAGCCCACCGATAAAAAAATACTCACCCCCTTCTCCAGGCGTGCAGCCCTTCGGCGTGCCGCTGTCCATGCCACCAGTGATGGCAGCTGCCCTCTCGCGGCATGGAATACGGAGCCCGGGGATCCTGCCCGTCATCCAGCCGGTGGTGGTGCAGCCCGTCCCCTTTATGTACACAAGTCACCTCCAGCAGCCTCTCATGGTCTCCTTATCGGAGGAGATGGAAAATTCCAGTAGTAGCATGCAAGTACCTGTAATTGAATCATATGAGAAGCCTATATCACAGAAAAAAATTAAAATAGAACCTGGGATCGAACCACAGAGGACAGATTATTATCCTGAAGAAATGTCACCCCCCTTAATGAACTCAGTGTCCCCCCCGCAAGCATTGTTGCAAGAGAATCACCCTTCGGTCATCGTGCAGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCAAAGGAAGCGGAGGATACACAGATGTGATTATGATGGATGCAACAAAGTGTACACTAAAAGCTCCCACTTGAAAGCACACAGAAGAACACACACAGGAGAAAAACCCTACAAATGTACATGGGAAGGGTGCACATGGAAGTTTGCTCGGTCTGATGAACTAACAAGACATTTCCGAAAACATACTGGAATCAAACCTTTCCAGTGCCCGGACTGTGACCGCAGCTTCTCCCGTTCTGACCATCTTGCCCTCCATAGGAAACGCCACATGCTAGTCTGATTGCCTCTGTGTCCTGCCTCAGCGTGACTCCCCACTCACCTGGCTCTCTCTCTGTCCTGCCTCCCATTATCTAACACATTTTTTACATGTACATTTTAATTTGATTCAGCTGGTCTGAATCTCTGAATTTATATCATCCAAAACTTCCATATGGTCAGTAGTAGATGTTCTCTAATCCTCCCTCTCCTTACCACGGGTCAGACCTAAAGAATGTGAACACTTTTTTTTTTTTTTCTGGGGATGCTAAGCAAACCCTTCTTACAGATACGTTTAATGTAATAAGAACAAGGGAACATGTAAACTAACATAACCAATTGTCAGTTCTCCATGTATTCCTCAAAAGAATGTCAGAGTAAATGTATTAGAAATACAGTATCCAGACTGCTAGTCCTTGCCAGAGACATTCTTACCTCTGCCCTGTGATAATATTTTATGCTTGACAGTGAAAACAAGTGTGGCCCCTTGCACCGGTTAGCTAGAAGTACAGCCAGATTTCAAGCTAGTGCAGTCACCTCTTCCGTCATTCTTCACAAATCTTGTCAACCTGGATCTTAGACTTCATCTGAATCGAGTTCTTTGCCCTCCTTTGTGCCTGCAGCTCATATGGAGGTCTTTGCCACCAATGGGAGATGAGCCCAAACTTTCGATCtaggtgggtgatgtgtagcagttcaagggaagggtgctgtgttttcatagcatggagtcggaggagagggccatttagcagggggagcagaagaggcaattcctcctgggctaggggttgtcagtgaggtttcaacattttgttagctgtgtgcagcattcccagagcttcagtctctgtgcatactcagctttgtagaaccatgctgcaaagccatataccgatggggttatccATGCAACTATCTCCATTCCTACAATGTCCTTAATATGAGATCATCAAACATTGATAGTAGGGACTCCATGGAATATTTGCCCAGTAATGGTAAGAAATCTTTCGGGTAAGAGTATGGATGGTTCTTCTTTTACCCAATCTGCTTATAGCTTTTTTTGTAAACAGGGAAATGTTGAGTGGTACTTGTATTCCCTTATCAAATTAATCACATAGCTTTTATACAGAAACTCTTCCTGTGTGAGCTGTTAAGGTGCCAAATTGGCTGTCATTTGTATTCATGACACATACCATAAAGCATCTGCTAATGCTTTAATGGATTGATTCAATTAAGACCTGAGTGACACTATTTGTAAATATAACTAGTTGTGAAGCACACATACCTTTATTTTGGGAATTTATGAGAAAATATAGAAAACCACAGATCAGGGATTCATATATGTAGCTCAAAAATTCCCAAAAGTTTACTGTTAGAGTTGGCAATTTCCTATCACTATTTCAGTGTCAGAACAAACTGAAAATAATGGCTCGTGTTTATGTTGAAGATAAATAGCACCATTATTGGGGGAAGTTATTCAAAAGCAGGCTTTTGAGCACCATAGTCTAAATGCCAATAAAAATAATTCATACATAGAAATGTCATTGGTCCTGAATTTGAAGAAAGTGAGCAACAGTAGTTAAATGTGGGTGCATATAACCAAATTCCCCTTCATCAAGAATGGAGGAGAAGAGAGAAGAATGAAATCCTGAAGATTCATCCCAGCCGCAACTCAGGATCCAACACAACTTTAACTGGGAGGAATACATTGTTTGATCATTTTTAAAACATCTGTGAATGAGTGATTCCGGAGGCCTGTGAATTGTGTGGGGAGCTTGCTTTGATGGCACTGTGTTAATAAAAGTTGTAGGGACTGTGCACCTAAGAGGCTAAGAGGTCCCACTCATCCGCCCTGTGAACCAGCTGTAAAGAAATGTAGTTAAGAAATGCAAAGAAATGTGTTATCTTGGCACTTGGGTTTGATTTTCCTTTTTTTAAAGCACTGCAAAACTTCTTTAGGATACTAAAACATCCTAATTGGGCTGTTTTTTTGTTTTGTTTTGTTTTTCAGCTAAAGGCAAAGATAATTTTTTTTTCAGCTGAAGTTTTTCTTTTTTGCAACTATGACATGAATTGAGTGATAAAATGGCTCTTTGAAAAGTAGATATTGTCTGTATTGTAAATGCTTAGTCATATTCATGGCAAAGTGTTCATTTCTTGAGATGGTTCTTTCACAACACACAAGAATCAAGATGGAACGCAAGGAAAATCTTTTTGTTTTGACCGAGGTAACCAGTTTATGTGTGTTCCAATCCATAGAGAAGTGGGGGAAAGGGCGAGAAAGGATCAGATTGATCTGGGATCAGCTTTGAGCCTGAGTTCAGTGAATAGCCTCATGGGCATCTCATGGAATTGATGCATTTGCTGTGGCATATTTAAATTTTGTTCAAAAGATTTGAAGCAAGACCTTGCAAAGACTCTTAACATTACTGTTCAGCTTGCTTAGATTGTGTTAACAGTTCATTTAACAAAGATCCGTTTTAACTCTGAACAAAAGCAACCCAGAGCGGCCATTCTCTATTCCCATGCTGGTCAATACGCTTTCATTACCAATTGGCCCTTACCAAACTTTTCTTATATATATATTTGTATTTTACTATGATAGTTGAGAAATTTAGCCTCTTAGTCATTTTTAGCTGTTATTGTGGAAGACCTCAAATACAAGATTAGATGCCCTTGAACATGTTTTAATGATGTGTGTCATGTTACTATCAATGGTGATTTCAATCGCAATATTTTAAATTGATGAGAATGATTTGTAAACATGAAGTTACTATTACGTAAATTCTGTTTGTTATAGAGTTTCTTCAGTTGTTACCCAAGTGTCATCCTAGAGAAGTCAGAAGAATCAGAATCCATCGTATTTTAGAGTTATGTGAATCTACATCATAAATGGGCATTAACATTCTAAATTGCTTGGTTTGGAGAATGTGTTAGCAGCATAGCTATATTCAACTAGGGAGATGCTAAATACACAGAAGTTTCAAGAGCCTTGGAACAGAATTACAGGGGAACTATATATGTATATGTATATTTTATTAAACACCCATCTGCACTATCAGTATTGCACTAATGTGGAATTTGAAAGACTATTTTGCTGATACTGTATATATGCGCATCATTCCTGATTAGATTGTTGTAAAGACAATCTGAAAGATCTAAGGTTTTAAAATAATTTGGTTTGAAAATATACAGTTGTCTTGAAGGAATTGCTGTCATACATGAAGTTGCTCCGAGCTGTCTTTATTCTCTTCTTGGTCAAGGTTAACAATTGCTAAATGATCGCAAATTCACCTAAACAATACATTTACAAAGCCATCTTTACATGCATTAAACGAGGGCTACAACAATATTGTTTTACAAATACTAGCACTTTTTTTTCTGTTATGTACTTAGTGTTAGAGGGTCAAAATAATCTTTCTGCTTAGCATCTCTTAAACCATACCTGCAAATATAGCAGGATTATTACATTTACAGTACTTTAATACTTGTATAAACTATGCAGAAATTTTTAATAAAGTGTAATATATTTTATAAGCTAATAAGACTGAATGGGTAAAGGTTTTTAGCATGCATTAGTATACTTGCAGATACTGAAACATTTTGGTAATCTTTCTTACTAAAGATGTGAATGTTTAATGTACCTTCTCTGTTTCTACTCTGTAGTCCAATGGGAATTCAGTAATGACATTTTGTCATGTCAAACTGTGAACATAAATTTGTACTGTACAGTCCTCATATACTATATACAGTATGCAATATATATTATATACTTGTTAATAAAACCATCAGAATATTAAATGTGATCATGTGATTACTTCATATGCAGTGATCACTAGAGCAAAACTTACAGAGCAATGTAAGAACCCTTGCTTAGAACATTACTTACTCTGATGGGCAGTTATTGTTGATGGAGGGACAGAAAAATAGATCTAACTGGAAGATGAACTACCGGAATTAACTCAGCCCTCAAGCTATGTCCCTGGTTTTCTGAAAACAGCCAACAGGAAGTCTCCTAGGCTGAAATCATAAAACTGCAGACAATCCAGCAAAAATCTACAAACTCACCTAGTTCATTCTTGAAATACTTCTTGTATTTGttatttatgaacccctgcctgcttccaaaaagaacttgcagcattttgtattaaaagacgcaTGTGTATAATACTTTAAACTTTTAGAGTAAAATATCAAGACTCTCATGTTGGGGAGTGGGGAACGAGGAACAGAACAATAACGCATTAAAGTAAATAACTCTGGATAAAAGTAA

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