Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RNF13P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:180770844-180773314  UCSC
Coordinates (T2T) chr3:183572708-183575178  UCSC
Coordinates (hg19) chr3:180488632-180491102  UCSC
Strand -
Parental Sequence XM_017005661.2
Parental seq. overlap 952 bp
Parental seq. overlap (%) 39%
Genomic Region Intergenic
Retrocopy Summary RNF13P1, located on chr3:180770844-180773314, is a retrocopy of the parental gene RNF13. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RNF13
Full Name ring finger protein 13
Also known as DEE73|EIEE73|RZF
Coordinate chr3:149812688-149962139
Strand +
Gene summary The protein encoded by this gene contains a RING zinc finger, a motif known to be involved in protein-protein interactions. The specific function of this gene has not yet been determined. Alternatively spliced transcript variants that encode the same protein have been reported. A pseudogene, which is also located on chromosome 3, has been defined for this gene. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RNF13P1
Bonobo Pan paniscus RNF13P1
Gorilla Gorilla gorilla RNF13P1
Orangutan Pongo abelii RNF13P1
Gibbon Nomascus leucogenys RNF13P1
Green monkey Chlorocebus sabaeus RNF13P1
Crab-eating macaque Macaca fascicularis RNF13P1
Rhesus Macaca mulatta RNF13P1
Baboon Papio anubis RNF13P1
Golden snub-nosed monkey Rhinopithecus roxellana RNF13P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RNF13P1
CATAGCAAATACTGTTTGAATTTCAGAAGATGATTGGTTTATTTCCCTTTAAAATATTTAGGTATATACTGTAATATGATTTTTTTTTGCTCCCTTCAAAGATTTCTCTAGAAATAACTTATTTTTTAGTACTCTAAAATTTAATCAAATTACTGAAAAAGGACTTTTGATATGGTATTTATCTGCAAGAGTGTACTTCTTCACTAATAATAATAGACTGGTGCTATAACTCAAGCATCAATTCAGCTCTTCTTTTGGAATGAAAGTATAGCCAAAACAACAACAACAAAAAGTCCTCAGCATAGCTTGCAATTAAGATCTAGATCACAGTATTTAAGTGTTTTGCATTTTATACATGAGGTTAGTGCTACAGCCACCTAGCATGAAATAACCCAGCTTCCACCTCCACAAAGTTACCTAGAGTTGTTGAGTTGGAATATGTTCTGGCATTTACCCGACCTTCCATCATTGGTGAGAGGCAACAAGGTAATTCAGTGCCTTTCCTCCTATCAGCACAAAGAAACTCAAAGCTGTCTTTTCCCTTTCTGTTCCAAAGAGTCTTATCCTGACAGGAGCAGTCTATACTAGTGCAGATTTCAACACTTCTTTTTTTTTTTTTTAACGTTTTAATTATTATAGTGTTATGTAGAGATTTGACTCAACAGCTAAAGTAATGTCTCTGAACTTTACTTACTAAATTTCAGTATCCTTAAGAGTTTTGTGGTATTGTTATCAAAGCAAAAAGAAAATGCTGCATAAAAATACCAAACCTCAGCAACTGTTAATACTCAGATCATATACCTCTTAATAAATGGCATCTTATGCTAATTAGCCCTGCTAAACTGTGTACAGAGGAAATTATTCAAGTATTGGATTTGAAAGTAAGTGACTTATGTTTAACAGAACTAATGATGTCCACAAAATTTTTCCAGGATAGACATAGAGCTAGAAGAAACAGACTTTGTAAAGATCAACTTAAGAAACTCCCTGTACATAAATTCAAGAAAGGAGATGAGTATGATGTATGTGCCATTTGTTCAGATGAGTAGGAAGATGGAGACAAGCTCAGAATCCTTCCCTGTTCCCATGCTTATCACTGCAAGTGTGTAGACCCTTGGCTAACTAAAACCAAAAAAACCTGTCCTGTGTGCAAGCAAAAATTTCCTTCTCAAGGCAATCCAGACTCTGACACAGATGGTAGTCAAGAATAAAATGAAGTGACCCTTTACTTAGACCTTTAGCTTCTGTCATTGCCCAGTCATTTGGGGCTTTGTCAGAATCCCGCTCACATCAGAACATGACCGAATCTTCAGACTATGAGGAAGATGACAATGAAGATAACAACAGTAGTGATGAAGAAAATGAAACTAATGAACATAATGTTGCGGTCCAGTTGCAGCCTAATGGTGAATGAACATAGC
>XM_017005661.2
TAACAGATATGtatgtgtatacctgcgaaaccaccaccaccacaatcaagataatgaaatattaaccaccctaaaaagtttggcaatgccttccttctaccccttccaacttttccttcatcctcccctcactacccttctccatgcccagacaactacaaatctgattttagtcactatagattactttgcattttctacagctttatataaatggaatcataaagtctgtactcttttgtgtctgtcttctttctgtcaccgtaattattttgagatttgtatatgttattgagtgcatggattgttcattcctttttattgctgagatatattccattgtgtgaatataccatgatttgtttacccatttacctattgatcaacatttgggttgtttctagtttttggctattacaaataaagctgacatggacatttgttgtatggaaatatgctttcatttctattggATCACAAAATTTGTCCAGGATAGACATAGAGCTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTTCCTGTACATAAATTCAAGAAAGGAGATGAGTATGATGTATGTGCCATTTGTTTGGATGAGTATGAAGATGGAGACAAACTCAGAATCCTTCCCTGTTCCCATGCTTATCACTGCAAGTGTGTAGACCCTTGGCTAACTAAAACCAAAAAAACCTGTCCAGTGTGCAAGCAAAAAGTTGTTCCTTCTCAAGGCGATTCAGACTCTGACACAGACAGTAGTCAAGAAGAAAATGAAGTGACAGAACATACCCCTTTACTGAGACCTTTAGCTTCTGTCAGTGCCCAGTCATTTGGGGCTTTATCGGAATCCCGCTCACATCAGAACATGACAGAATCTTCAGACTATGAGGAAGACGACAATGAAGATACTGACAGTAGTGATGCAGAAAATGAAATTAATGAACATGATGTCGTGGTCCAGTTGCAGCCTAATGGTGAACGGGATTACAACATAGCAAATACTGTTTGACTTTCAGAAGATGATTGGTTTATTTCCCTTTAAAATGATTAGGTATATACTGTAATTTGATTTTTTGCTCCCTTCAAAGATTTCTGTAGAAATAACTTATTTTTTAGTATTCTACAGTTTAATCAAATTACTGAAACAGGACTTTTGATCTGGTATTTATCTGCCAAGAATATACTTCATTCACTAATAATAGACTGGTGCTGTAACTCAAGCATCAATTCAGCTCTTCTTTTGGAATGAAAGTATAGCCAAAACATAAAAAAAAAAAAATCCTCAGTATAGCTTGCAATTAAGACCTAGATCACAGTATTTAAGTGTTTTGCGTTTTATACATGAGGTCAGTGCTACAGCCACCTAGCATGAACTAACCCAGCTTCCACCTCCATAAAGTTACCTAGAGTTGTTGAGTTGGAATATGTTCTGGCATTTACCTGACCTGCCAATCATTAGGGAGAGGCAACAAGGTAATTCAGCCTTTCCTCCTATCAGCACAAAGAAACTCAAAGCTGTTTTTTCCCTTTCTGTTCCAAAGCAGTCTTATCCTGACAGGAGCGGTCTATACTAGTGCAGATTTCAACACTTTTTTTTAACGTTTTAATTACTATAGTGTTATGTAGAGATTTGATTGAGCAGCTAATGTTTCTGAACTTTACTTACTAATTTTCAGTGTCCTTAAGGGTTCTGTAGTGTTATCAAAGCAAAAAGAAAATGCTGCATAAAAATACCAAACTTCAGCAACTGTTAATACTCAGATCATATACCTCTTAATAAATAGCATCTTATGCTAATTAGCCCTGCTAAACTATGTACAGAGGAAACTGTTCAAGTATTGGATTTGAAAGTAAGTGACTTATGTTTAACAGAACTAATGATGTATTGAAACACTGTATTATGAAAAGCTAAATTATACATCATTGTAACTATGTAGAAAGTGTAGACTAATGTATAATCAAAATGCTAAGGATTTTTATATGGCCTTGTATGAGGGGAGTTTGAATGTTAATAAACATGTTTTCCACTTTAAGATCCA

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