Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM151AP1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:194755473-194756528  UCSC
Coordinates (T2T) chr3:197452048-197453103  UCSC
Coordinates (hg19) chr3:194476202-194477257  UCSC
Strand +
Parental Sequence NM_176782.3
Parental seq. overlap 964 bp
Parental seq. overlap (%) 48.8%
Genomic Region Intergenic
Retrocopy Summary FAM151AP1, located on chr3:194755473-194756528, is a retrocopy of the parental gene FAM151A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM151A
Full Name family with sequence similarity 151 member A
Also known as C1orf179
Coordinate chr1:54609180-54623527
Strand -
Gene summary Located in extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FAM151AP1
Bonobo Pan paniscus FAM151AP1
Gorilla Gorilla gorilla FAM151AP1
Gibbon Nomascus leucogenys FAM151AP1
Green monkey Chlorocebus sabaeus FAM151AP1
Crab-eating macaque Macaca fascicularis FAM151AP1
Rhesus Macaca mulatta FAM151AP1
Baboon Papio anubis FAM151AP1
Golden snub-nosed monkey Rhinopithecus roxellana FAM151AP1
Marmoset Callithrix jacchus FAM151AP1
Orangutan Pongo abelii Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM151AP1
TGGTGGAGAATGAGGTGCTGCTGGGGCCTCCTGCCTCCCACGGGATCCCAGCTTGCAGGGAACCTTGGGGACTCTGGGTCGTGCGGAGTTGGGGGCGTTCCCCAGAGAGCGTTGTCATGGCCTGCAGGGAGCAGTTATCGAAGAATCAGGTCAAGTGGGGGTTTGCTGGCATTACCTGTGTTTCTGTAGTGGTCATTGCCGCGATAGTCCTTGCCATCGCCTTGCGGTGGCCAGGCTGTGAGCTGGAGGCCTGCAGCTCCGAGGCCGACATGCTGGATTACCTGCTGAGCCTGGGCCAGATCAGCTGCCGAGATGCCCTGGAGGTCACCTGGTACCACGCAGCCAACAGCAAGAAAGCCGTGACAGCTGCCCTGAACAGCAACATCACAGTCCTGGAGGCTGACGTCAATGTAGAAGGGCTCGGCACAGCTGACGAGACAGGAGCTCCCATCGTGGCACACCCTCCGGCTATCTACAGTGATGACACACTGGAGCAGTGGCTGGATGGTGTGCTGGGCTCTTCCCAGAAGGGCATCAAACTGGACTTCAAGAACATCAAGGCCGTGGGCCCCTCCCTGGACCTCCTGTGGTAGCTGACAGAGTGGGGCAAAGTCCGGCGGCCCATGTGGATCAACGCTGACATCTTAAAGGGCCCCGACATGCCCATCTCAGCTGAGGTCAGTGCCACACAGTTCCTGGCCCTGGTCCAGGAGAAGTATCCCAAGGCCACCCTGTCTCCAGGCTGGACCACCCTGTACGTGCCCATGTTCCCAAACAGGACGTACACCCGAGCCATGGTGGAGAAGATGCACGAGCTGGTGGGAGTGGTGCTCCAGAGGGTCACCTTCCCTGTGCGGTCTTCCACAGTGCGGGCCGCCCAGGCCCACTCCAGCTGGCTGCTGAGCCAATCTGAGAGGTACAGCCTGACGCTATGGCAGGCTGCCTCGGACCCCATGTTGGCAGAGGATCTGCCCTACGTCCAGGATAACACTGCTGTCCACCACGTCTACTGTGATATCTTTGAGCCTTTCCTGTTGCAGTTCAAGCAGGTGGCCT
>NM_176782.3
AGAGCAGACCAGGCCCGGTGGAGAATTAGGTGCTGCTGGGAGCTCCTGCCTCCCACAGGATTCCAGCTGCAGGGAGCCTCAGGGACTCTGGGCCGCACGGAGTTGGGGGCATTCCCCAGAGAGCGTCGCCATGGTCTGCAGGGAGCAGTTATCAAAGAATCAGGTCAAGTGGGTGTTTGCCGGCATTACCTGTGTGTCTGTGGTGGTCATTGCCGCAATAGTCCTTGCCATCACCCTGCGGCGGCCAGGCTGTGAGCTGGAGGCCTGCAGCCCTGATGCCGACATGCTGGACTACCTGCTGAGCCTGGGCCAGATCAGCCGGCGAGATGCCTTGGAGGTCACCTGGTACCACGCAGCCAACAGCAAGAAAGCCATGACAGCTGCCCTGAACAGCAACATCACAGTCCTGGAGGCTGACGTCAATGTAGAAGGGCTCGGCACAGCCAATGAGACAGGAGTTCCCATCATGGCACACCCCCCCACTATCTACAGTGACAACACACTGGAGCAGTGGCTGGACGCTGTGCTGGGCTCTTCCCAAAAGGGCATCAAACTGGACTTCAAGAACATCAAGGCAGTGGGCCCCTCCCTGGACCTCCTGCGGCAGCTGACAGAGGAAGGCAAAGTCCGGCGGCCCATATGGATCAACGCTGACATCTTAAAGGGCCCCAACATGCTCATCTCAACTGAGGTCAATGCCACACAGTTCCTGGCCCTGGTCCAGGAGAAGTATCCCAAGGCTACCCTATCTCCAGGCTGGACCACCTTCTACATGTCCACGTCCCCAAACAGGACGTACACCCAAGCCATGGTGGAGAAGATGCACGAGCTGGTGGGAGGAGTGCCCCAGAGGGTCACCTTCCCTGTACGGTCTTCCATGGTGCGGGCTGCCTGGCCCCACTTCAGCTGGCTGCTGAGCCAATCTGAGAGGTACAGCCTGACGCTGTGGCAGGCTGCCTCGGACCCCATGTCGGTGGAAGATCTGCTCTACGTCCGGGATAACACTGCTGTCCACCAAGTCTACTATGACATCTTTGAGCCTCTCCTGTCACAGTTCAAGCAGCTGGCCTTGAATGCCACACGGAAACCAATGTACTACACGGGAGGCAGCCTGATCCCTCTTCTCCAGCTGCCTGGGGATGACGGTCTGAATGTGGAGTGGCTGGTTCCTGACGTCCAGGGCAGCGGTAAAACAGCAACAATGACCCTCCCAGACACAGAAGGCATGATCCTGCTGAACACTGGCCTCGAGGGAACTGTGGCTGAAAACCCCGTGCCCATTGTTCATACTCCAAGTGGCAACATCCTGACGCTGGAGTCCTGCCTGCAGCAGCTGGCCACACATCCCGGACACTGGGGCATCCATTTGCAAATAGCGGAGCCCGCAGCCCTCCGGCCATCCCTGGCCTTGCTGGCACGCCTCTCCAGCCTTGGCCTCTTGCATTGGCCTGTGTGGGTTGGGGCCAAAATCTCCCACGGGAGTTTTTCGGTCCCCGGCCATGTGGCTGGCAGAGAGCTGCTTACAGCTGTGGCTGAGGTCTTCCCCCACGTGACTGTGGCACCAGGCTGGCCTGAGGAGGTGCTGGGCAGTGGCTACAGGGAACAGCTGCTCACAGATATGCTAGAGTTGTGCCAGGGGCTCTGGCAACCTGTGTCCTTCCAGATGCAGGCCATGCTGCTGGGCCACAGCACAGCTGGAGCCATAGGCAGGCTGCTGGCATCCTCCCCCCGGGCCACCGTCACAGTGGAGCACAACCCAGCTGGGGGCGACTATGCCTCTGTGAGGACAGCATTGCTGGCAGCTAGGGCTGTGGACAGGACCCGAGTCTACTACAGGCTACCCCAGGGCTACCACAAGGACTTGCTGGCTCATGTTGGTAGAAACTGAGCACCCAGGGGTGGTGGGCCAGCGGACCTCAGGGCGGAGGCTTCCCACGGGGAGGCAGGAAGAAATAAAGGTCTTTGGCTTTCTCCA

Publications

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