Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CRIP1P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:25686841-25687254  UCSC
Coordinates (T2T) chr3:25689682-25690095  UCSC
Coordinates (hg19) chr3:25728332-25728745  UCSC
Strand +
Parental Sequence NM_001311.5
Parental seq. overlap 374 bp
Parental seq. overlap (%) 55.7%
Genomic Region Intergenic
Retrocopy Summary CRIP1P2, located on chr3:25686841-25687254, is a retrocopy of the parental gene CRIP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CRIP1
Full Name cysteine rich protein 1
Also known as CRHP|CRIP|CRP-1|CRP1
Coordinate chr14:105486886-105488947
Strand +
Gene summary Cysteine-rich intestinal protein (CRIP) belongs to the LIM/double zinc finger protein family, members of which include cysteine- and glycine-rich protein-1 (CSRP1; MIM 123876), rhombotin-1 (RBTN1; MIM 186921), rhombotin-2 (RBTN2; MIM 180385), and rhombotin-3 (RBTN3; MIM 180386). CRIP may be involved in intestinal zinc transport (Hempe and Cousins, 1991 [PubMed 1946385]).[supplied by OMIM, Mar 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CRIP1P2
Gorilla Gorilla gorilla CRIP1P2
Orangutan Pongo abelii CRIP1P1
Gibbon Nomascus leucogenys CRIP1P1
Green monkey Chlorocebus sabaeus CRIP1P1
Crab-eating macaque Macaca fascicularis CRIP1P1
Rhesus Macaca mulatta CRIP1P1
Baboon Papio anubis CRIP1P1
Golden snub-nosed monkey Rhinopithecus roxellana CRIP1P1
Bonobo Pan paniscus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CRIP1P2
ACCTGTAGCCCGTCCCGCCCCAGCCGCCGCCGCCAGCACCGGACCCGGAGCCGCCATGCCCAAGTGCCCCAAGTGCGACAAGGAAGTTTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTTGCCTCGGCCCTGCCTGAAGTGCGAGAATGTGGGAAGACGCTGACCTCCGAGGGCCACGCTGAGCACGAAAGCAAGCCCTACTGCAACCACTTGCTATGCCGCCATGTTTGGGCAAAAAGGCTCTGGCCGGGGTGAAGCCGACAGCCACACTTTCAAGTAAATCGGGTGGTGGAGACCTCATCCTTGGCCGCTCGCTGGGCCACTGTCCAGGCAAATGCCAGGCCTCGCCCCCAGATGCCCAGGGCTCCTTTGTGGCCCCTAGTGCCCTCAATAAACATGAACACTTGG
>NM_001311.5
CTTTTGCCTCGGAACTGGACCCGGGAGACATCACAGCGCTGGGCTAGGGGCGCGGCTTGAACTCGCCTAAAGAGCTGCGCCCTCTCATCTCGCGCCTGCAGCCCGTGCCGCCCCAGCCGCTGCCGCCTGCACCGGACCCGGAGCCGTCATGCCCAAGTGTCCCAAGTGCAACAAGGAGGTGTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTGGCATCGGCCCTGCCTGAAGTGCGAGAAATGTGGGAAGACGCTGACCTCTGGGGGCCACGCTGAGCACGAAGGCAAACCCTACTGCAACCACCCCTGCTACGCAGCCATGTTTGGGCCTAAAGGCTTTGGGCGGGGCGGAGCCGAGAGCCACACTTTCAAGTAAACCAGGTGGTGGAGACCCCATCCTTGGCTGCTTGCAGGGCCACTGTCCAGGCAAATGCCAGGCCTTGTCCCCAGATGCCCAGGGCTCCCTTGTTGCCCCTAATGCTCTCAGTAAACCTGAACACTTGGAAAACCTGTGTGTGTACATGCGCGTGTGTGCTGGGGAGTGCCAAGGGAGCTGCAGTGGGGTCCTGGCAGCAGGCTCTGCCACCGGCGCCTGCTCTTCTGCTGCCCATTGCCCTCCCCAGGGGGCCGTTCCAGGGTCTCATAGGCGAGGGCTCCCTGTGCAGG

Publications

PMID - Link Title