Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ZNF587P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:31794480-31794945  UCSC
Coordinates (T2T) chr3:31796982-31797447  UCSC
Coordinates (hg19) chr3:31835972-31836437  UCSC
Strand +
Parental Sequence NM_032828.4
Parental seq. overlap 398 bp
Parental seq. overlap (%) 5.8%
Genomic Region Intragenic (OSBPL10)
Retrocopy Summary ZNF587P1, located on chr3:31794480-31794945, is a retrocopy of the parental gene ZNF587. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF587
Full Name zinc finger protein 587
Also known as ZF6
Coordinate chr19:57849859-57865117
Strand +
Gene summary Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF814P1
Bonobo Pan paniscus LOC100983542P1
Gorilla Gorilla gorilla LOC115930114P1
Orangutan Pongo abelii LOC112130069P1
Gibbon Nomascus leucogenys LOC100598299P1
Green monkey Chlorocebus sabaeus LOC103235422P1
Crab-eating macaque Macaca fascicularis ZNF814P1
Rhesus Macaca mulatta LOC709314P1
Baboon Papio anubis ZNF814P1
Golden snub-nosed monkey Rhinopithecus roxellana ZNF552P1
Marmoset Callithrix jacchus ZNF418P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF587P1
TTGTGCTGAGGCTCCTAGCTCAGCAGGGCACTGTGACCCTTGCAGACATGGCTGTGAACTTTTCCCAGAAGAAATGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTGTACTGTGACGTGATGCTGAAGAACCTGGCACTTTTATCTTCCCTGGGTTGTTGGTGTGGAGTGAAAGATGAAGAGGCACCATATAAGCAGAGCATTTCTATACAAAGAGAGTCTCAGGTCAGGACTCTGAGGGCAGGGGGGTCTCCCAAGAAGGCTCACCCCTGTGAAATGTGTAGCCCCATCTTGGGAGACATTTTTCACTTGGCACAGCAGCAGGAAACTCATCACAAGCAGAAACTGAACAGGAGTGGGGCATGTGGGAAAAAACTGGATGACACTGAAAACCTTCATCAGCACCAGAAGCAGCACATTGGAGAGAAACTCGAGAGAAGGGGTGCCAGAGAAGTGTCATTTGTAAA
>NM_032828.4
AGTAGCGGCTGTGTATCGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGCTGGGTGGGACCGCGGTGACTGAACCTAGAAGGTGGAGAGGAATCGTCCTCGGTGCCCAGAGGCGGCTCTGCAGCCCCGTGACGGCGACCACTGCTCCCGGGCCGTGCTTCCCCAAGTAGTCCGATGGCAGCGGCTGTGCCGAGGCGCCCAACTCAGCAGGGCACTGTGACCTTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGTGTCTTCTTAGTGAGGCTCAGAGGTGCTTGTACCGTGATGTGATGCTAGAGAACCTGGCTCTCATATCCTCGCTGGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTTGTAAGCAGAGAATTTCTGTACAAAGAGAGTCTCAGAGCAGGACTCCTAGGGCAGGTGTTTCTCCTAAGAAGGCTCACCCCTGTGAAATGTGTGGCCTCATCTTGGAGGATGTTTTTCACTTTGCTGACCACCAGGAAACTCATCACAAGCAGAAGCTGAACAGGAGTGGAGCATGTGGAAAAAACTTGGATGACACTGCATACCTTCATCAGCACCAGAAGCAGCATATTGGAGAGAAATTCTACAGAAAGAGTGTCAGAGAAGCATCGTTTGTAAAGAAACGTAAGCTCAGGGTGTCACAGGAGCCATTTGTCTTCCGCGAGTTTGGGAAGGACGTTCTGCCCAGTTCAGGATTGTGCCAAGAAGAAGCTGCTGTAGAGAAGACAGACAGTGAAACTATGCATGGCCCACCCTTTCAGGAGGGAAAAACTAATTACAGTTGTGGAAAACGCACAAAAGCCTTCAGCACCAAACACTCAGTTATTCCACACCAGAAACTTTTCACTAGAGATGGATGTTATGTGTGCAGTGATTGTGGAAAATCCTTTAGCAGATATGTCAGCTTCAGTAATCATCAGCGAGATCACACTGCAAAAGGACCTTATGATTGTGGAGAGTGTGGGAAATCTTATAGTCGAAAGAGCAGCCTTATTCAACATCAGCGAGTCCACACTGGACAGACAGCTTATCCCTGTGAGGAGTGCGGGAAATCTTTTAGTCAGAAGGGCAGCCTTATTAGCCATCAGCTTGTTCACACTGGAGAAGGGCCTTATGAGTGTAGAGAATGTGGGAAATCTTTTGGTCAAAAGGGTAACCTCATTCAACATCAGCAAGGTCACACTGGAGAGAGAGCTTATCACTGTGGGGAATGTGGGAAATCTTTTCGTCAGAAGTTCTGCTTTATTAACCATCAGCGTGTTCACACTGGAGAAAGGCCTTACAAGTGTGGAGAATGTGGGAAATCTTTTGGTCAAAAGGGCAACCTCGTTCACCATCAGCGAGGTCATACTGGAGAAAGGCCCTATGAGTGCAAGGAATGTGGGAAATCATTTAGGTACAGATCCCACCTCACTGAACACCAGAGACTTCACACTGGGGAAAGACCTTACAATTGTAGGGAATGTGGGAAATTATTTAACAGGAAGTATCATCTTCTGGTTCATGAGAGAGTTCACACTGGAGAAAGGCCATATGCGTGTGAGGTATGTGGGAAATTATTTGGCAATAAGCACAGCGTGACTATACATCAGAGGATTCACACTGGAGAAAGGCCGTATGAATGCAGTGAATGTGGGAAATCATTTCTTTCCAGCTCTGCGCTTCATGTTCATAAAAGAGTTCATTCTGGACAAAAGCCTTATAAGTGCAGTGAATGTGGAAAATCCTTTTCTGAATGTTCCAGTCTCATTAAACACAGGAGAATTCACACTGGAGAAAGGCCTTATGAATGCACCAAATGTGGAAAAACATTTCAGCGAAGCTCTACCCTCCTTCATCATCAGAGTTCACACAGGAGAAAGGCCTTATGAGTGCAGTGAATATGGGAAATCGTTTGCTGAAGCATCCCGTCTCGTTAAACACAGGAGAGTTCATACTGGAGAAAGGCCTTATGAGTGCTGTCAATGTGGAAAACATCAGAATGTCTGCTGTCCTCGGTCTTAAGCGACTTCGTGttgagatggagtcttgttctgtcacccaggctggagtgcagtggtgcagtcttggctcgctgcaacttgggcctcctgggttcatgcaatcctcctacctcagcctcctgagtagctgggattatgagtacacaccaccacgcccagctaatttttgtgtttttagtggagatggggttttaccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccaccttgactcccaaagtgctgaaattacaggcatgagcctctgcacctggccTTCATTCTTTTCGTATTGCTTAGAATATGACATGCTGAAccaggcatggtggctcatgcttgtaaacctgatgctttgggaggacaaggtggttcattggaggccaggagttagagatcagcctgggcaacatagccagacctcctctctacaaaaaGAAAAAAGAATGACAtgcttcttgtttttgtctgttataaatgaaactgctatatttgaatgcagttgttcatgtaggtatgtttcactatggtaatatggtggtgtgcagtgcctgagtcacgtgatagattaaagtacaactcttttttgagacagagtctcactctgtcacccaggcgggagttaggtggcatgatttcggctcactgcaacctctgcctcccaagttcaactgattcttctgcctcagcctcccgagtagcagggattaccggtgtgcaccaccatgcctggataacttttttttttatttctattagcaatggggtttcaccatgctggccaggcttgttatgaactgacctcaagtgatctgcctgcctcagcttctcaggtgtgacctactgtgcttggcctaatgtacaactttttaagcaatgccaaactatgacttaagaatgaaattattgctcatttgtatatctatctaccatcagtgtccaagaatttctgttctatcttaccaagagggagtatggttagtatttgaaattgtttattattttaataagtgGTTATAACTTTTGAGTCAGTGGTTTATGTTTTGCAttttttttgttttgagacaaagtctcgctctgtctcccaggctagagtaccgtggcacaatctcagctcattgcaacctctgcttcctgggctcaagcactctgcccacctcagcctccagagtagctggaaatacaggtatgcaccaccacaactggataacttttgtattttctgtagagagggttttacctttttgcccagtctgatcgcgaactcctgggctcaggcgatccacttgcctaggctccaaaagtgcttggtctacaggggtgaggcaccctgcctggccTCACCTGTAGGCTTGTTttttaaaatgaattttatctatttcccatttcattaatatatttaaaaataatgaaataacaaagacgtatgttggacttcattcattcttcagtgatgtcactttgctgCAAGGAATATTTGGttttcttttttttttttttttccagatggagtctagctctgtctcctaagctacagtgaagtggcatgatctcggcccactgcaacctccacctcctgtgttcaagcgattctgcctcagcctcctgagtagctgggactacaggcatgtgccattatacctggctaattttatttatttattttagtagagatggggtttcaccatgttacccaggctgctctctaccttctgagctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtcagccactgtacctggcTGAATACTTGGTTTTCAGTACCACAAGAACTATGAGCTGGTTATCCACTTCATGTGGAATCATAAGCGTCCCAAAGTGACAATACATATAGATTGCCAGGCAGTGAAACAGTTAAGATGCCACCATAGCTTTCTTTTCAACATCTTTCTAAGATTACCTTACTATTTCTTTTGTTCCAAGTTTGTACTTCCTCACAGTTCTCACATATGGAAAGGATACACACTTTGTAGAAACAAGAACTTTATGTTATCCAAGTTCTAGGATAGCCATGAGCTCCAATTATCTCAGAGCTCTGAGTCCTCTACTCAATACCCATTGAGATTTATGTGTTCTGAGGCTTTTGTCTTCTAGCTACTTACTTCATTCTCCATGGGTAACGTCATTCATCCACATTAACTAATTTCCTCACTCCAAGCTCTTTTCTAGAGATAATCTCCAGTCCCTGTGCAGAAACTGTCATTGCACTTTCTGCTGAAATGGCAGTTTCTTCTCAGCAAGGTGAGATTATGGAATCCAGAATCTTTTTTCAGGGGTCACATGCCCATTTCCCCACTTGCATGAATGTCGACACTGCAGCCACAGTTTTGGCCGTAAATGTGAATTTGGCAAGTAACCACTGTTCCCAGGGAAATGTCCCAATCAGAAGAAGATTATCTGGGACACTGATACTGACAGGGAGATGGGACATTCTGAGGGACCCGGAGGCAGGGTGCCACCTCCTCAACTTCCCTGAGGGCTGCCTAGAATCTGTTTCCTCTCACTCTGAATTATTCTTCCTCTTATGGCTGACCAAAAACATGGAACCTCACAAAGTCCACTGTAACAGCTTTATATTTGTGAAGTGAAGAACATGAAGACAGTTTCAAGCAAAGTTATTGAGTGGACACtttgtgttttttttgagaagtctcactctttcacccaggctggagtgcagtggcacgatctcggctcactgcaactccacctcccgggttcacgccattctcttgcctcagcctcctgagtagctgggaccacaagcgcccaccacgtcagcttaatttttttgttttgtttcttgagacagagtcttgctctcttgcccaggttggagtgccgtgtcgcaatctcagctcactgcaacttctacctcctggattcaagcacttctccttgcctcagccacctctttagctgggattacaggtgcgtgccaccacacccagctaatttttgtatttttagcagagaccaggtttcaccatgttggtcaggctggtctcaaactcctgacctcgtgatccacccacctcggcctcccaaagtgctggaattacaggcgtgagccactgcacctggcctgtattcttttctttagtagagacggggttttactgtatttgccaggatggtctcgatctccagacctcgtgatccgcccgccttagcctcccaaagtgctgggattataggcgtgagccaacacgccctggccACTTCTTGTCTTTGCAACATTTTTTAGATATGTATTTGTGTTTTTTGGGGAGCTTAATTTGCTAATGGAATCTCTGTTATTTTCCTAACATGCTTGGTGGATACAAGAGTTAAGACTTCCTGTCCCGTTTAGTGTAACAAAAGAAAGTTAAGAAATGTGGATAAAAGATTGTAAGTTAGAAATGGCAAGATAATCAGCTATATGAAGAATCTTggccaggtgtggtggctgaggcctgtaatcccaccactttgggaggctgaggtgggcggatcacaaggtcaggagttcaagaccaccctggccaatattgtgaattcctgtctctactaaaaatacaaaaattagtcgggcatggtggcgggtgcctgtagtcccagctactcgggaggctgaggccagaaaatcggttgaacctgggaggtggaaggtgcactgagccaatatcacaccagtgcactccaacctggtgacagagagacacatcatctcaaaaaaaaaaaaaaaaCTCAATCCATAAATGTTATACTTTATAACTTTATAACAGCATGTTATATGGGCTTAGATATTATCCCTAAAtttttttttttttttttttttttgagacagagtctcactctgtcacccaggctgaagtgcaatggcatggtctcggctcactgcaacctccgcctcccaggttcaagtgattctcttgcctcagcctcccgagtagctgggcctataggttccctccaccacgcccagctaatttttgtatttttagtagagatgggctttcactacgttagccaggctggtctcaaactcctgacctcatgatccacccccctcggcctcctaaagtgctgggattacaggcatctgccaccgcactcggcTTATCCCTAGAAATCCTATGATAGCATGATGTATAGGCACCTAAAGGCATGGCACTTGAGAAATGTGAATAAGATTGTAAGTTACAAATAGCAAGGTACAGTCAGATGTTAACAGTCTCAGCCCCTAAATGTCACCTTGTATTACAGCATGTTATATAAGCACATACAGGCACATACATGAAATAGTGATACTTCATTCTCAGTAATATCTTCATCCTTCTCACTGGAAAGATCTTTGATGATTTTTAATCAACATAGGAGTTTCAATGATATCTAGAAGTTTAAAAGGGCTCGTTCAAACAAATTATGACCACACACACTGAAGAGTATGTTTGTCTCTTGTGGTGTAAATTTTTTTTTATTACACCAAATTATGTTCACACAAAACCTTTGTAATCAGGGGGAATTAAAGAGCCTTcctggaaaatggaggttgcaatcagccgagatggtgccatcgcactctagcctggggaatagagtgagatcctgcctcaaaaaaaacaaaaaaaTTCTTTATTTTCTCCATAAACTACAGTTTATATAAGCAAAAGTTTCAGTACTAAGCAATTTTAGTCTCTGCAGTCTCTTGTCTTGAATTAATACAACTTTTGTTAATTCTCTTATGAAGTTAATCTTCCTGCTTGTATGTGAATTAAATATATGTCAAACTTTTTTTGTACAAAA

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