Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF525P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:31989022-31991714  UCSC
Coordinates (T2T) chr3:31991988-31994680  UCSC
Coordinates (hg19) chr3:32030514-32033206  UCSC
Strand +
Parental Sequence NM_001348156.2
Parental seq. overlap 1900 bp
Parental seq. overlap (%) 31%
Genomic Region Intergenic
Retrocopy Summary ZNF525P1, located on chr3:31989022-31991714, is a retrocopy of the parental gene ZNF525. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF525
Full Name zinc finger protein 525
Also known as -
Coordinate chr19:53365705-53386590
Strand +
Gene summary Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC456270P1
Bonobo Pan paniscus ZNF28P1
Gorilla Gorilla gorilla ZNF761P1
Orangutan Pongo abelii LOC100938707P1
Gibbon Nomascus leucogenys LOC100600281P1
Green monkey Chlorocebus sabaeus LOC103235195P1
Crab-eating macaque Macaca fascicularis LOC102145024P1
Rhesus Macaca mulatta LOC720017P1
Baboon Papio anubis LOC110740375P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104672674P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF525P1
AGGAAGCAGATCGCCTCAGTGAAGGTCACACTGCAGCACTATTGATTTCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACACTTGACTTTTAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGGACCCTACGCAGAGGGCTTTATACAGGGCCATGATGTTGGAGAACTACAGGAACCTGCATTCTGTGGATATCTCTTCCAAATGCATGATGAAGAAGTTCTCATCAACAGCGCAAGGCAATACAGAAGTGGACACAGGGACATTAGAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGGGAAAGATATTCATGACTTTGAGTTTCAATGGCAAGAAGACAAAAGAAATAGCCATGAAGCAACTATGACACAAATCAAAAAGTTGACTGGTAGCACCGACAGATATGATCGAAGGCATCCTGGAAACAAGCCTATCAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTTCCTGAACTCCACATATTTCAGACCAAAGGGAAAGTTGGTAATCAAGTTGAGAAGTCTATCAACGATGCTTCCTCAGTTCTAACGTCCCAAAGAATTTCTTCTAGGCCCAAAATCCATATTTCTAATAACTATGAAAATAATTTCTTCCATTCATCATTACTCACACTAAAACAGGAAGTACACATAAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAACATCAGATAATCTATTTAGGAGGGAAACAATATAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCATGCCATCATAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCAAGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTTAGTCGCAAATCAAATCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGAAAAGGCTTTCAGGCGTGATTCACACCTCACACAACACACTAGAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTTATAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTGGAGAATCCATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTTAGACGTCGTTCATATCTCGTAGTTCATTGGCGAACTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCAACCCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACACAGTTTTCAGTCGCAAATCACACCATGAAACACATAAGAGAATTCATACTGGAGAGAAACCTTACAAATGTGATGATTTTGACGAGGCCTTCAGTCAAGCTTCATCTTATGCAAAACAAAGGAGAATTCATATGGGAGAGAAACATCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACATCGCATTAGACATCAGAGAATCCATACCGGACAGAAATCTTACAAATGTCATAAGCGTGGCAAGGTCTTCAGTTAGAGGTCACTCCTTGCAAAACATCAGAAAATTCATTCCTGAGATAATTGTTCCAAATGCAATGAGTATAGCAAACCATCAAGCATTAATTGACATTAGAGTCAATTCAGCACAAGCATTAATTGACATTAAAGTGTTTACGTTAAGAGGATTGAAGACGTGAGCCACTTTTCCTAGCCTGa
>NM_001348156.2
AGACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGCGATTGACATCTAAAGACTCTTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGGTATCTCTTCCAAATGCACAATGAAGGAGTTCTCATCAACAGCACAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAACGTCATCACATTGGAGATTTTTCCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGATGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAATTGATGGGTAGTACAGAGCAATATGATCACAGGCATGCTGGAAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGTCTGAACTCCACATATTTCAGCCCAAAGGGAAAATTAATAATCAAGTGGAGAAGTCTATCAACGATGCTTCCTCGGTTTCAACAGCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATATCTAATAACTATGGGGATAATTTTCTGAATTATTCATTACTCACACAAAGACAGGAAGTACGCATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAGGAAACATCAGATTATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGACAAGGTCTTTATTCGGAAGCGATACCTTGCACGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGTCCTTCAGTCAGATGTCATCCCTTACATATCATCATCGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCAGACACAATTCAGCCCTTCAAAGACATAGGAGAATTCATACTGGAGAGAAACCACATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGAAGTCATACCTTGCATGCCATCGTAGCATTCATACTGGAAAGAAACCTTACGAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACCTTGAAAGTCATAGGATAACTCATACTGGAGAGAAACCATACAAGTGTAATGATTGTGGCAAGACCTTCAGTCATATGTCAACCCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGATGAAGCTTTCCGTTTCAAATCAAGTCTTGAAAGACATAGGAGAATTCATAATGGAGAGAAACTGTACAAATGTAATGAGTGTGGCAAGACCTTCAGTCAGGAGTTATCCCTTACCTGCCATTGTAGACTTCATAGTGGAGAGAAACCTTGCAAGTGTGGAGAATGTGACAAGGCTTACAGTTTCAAATAAAATCTTGAAATACGTCAGAAAATTCATACTGGAGAGAAATGTTATAAGTGTAATGATTGTGGCAAGATCTTCAGTCATACGTCATCCATTGTATACCATCATAAATTTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTGATGAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCTTACAGGTGTAATAGGTGTGGCAAGACCTTCAGTCATACATCATCCCTTACATGCCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGATGAAACTTTCAGATACAAATCAAATCTTGAAAGACATAGGAGAATTCATAATGGAGAGAAACCGTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAGTCATGCCTTACACGCCATCATAGACTTCATACTGGAAATAAATCTTATAAGTGTAATGAGTGTGGCAAGACCTTCAGTAAGGAGTTAACACATGCCATCATAGACGTCATACTGGAGAGAAACCTTAGAAGTGCAATGAGTGTGGCAAAACCTTTCATAGGCAGTCAGCGCTTATTTACCATCAAGCAATCCATGGCAGAGGGAAACTTTACAAATGTAATGATTGTCACCACGTCTTCAGTAATGCTACAACTATTGCAAATCATTGGAGAATCCATAATAAAGAGAGACCTTACAAGTGTGATAAATGTGACAAATTTTTCAGACATCGTTCATACCTTGCAGTTCACGGGCGAACTCATGCTGGAGAGAAACCTTACAAATGTGAAGAATGTGATAAAGCTTTCAGATTCAAATCAAACCTTGAAAGTCATAGGAGAATTCATACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGTAAGATGTTCAGTCAAAATTCGGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGCAAAGCAAAGCTTGCATGTCATCATAGACTTCATACTGGAGAGAACGCTTGCAAGTGTAATAAATGTGGCGAGGTTTTTAATCAACAAGCACACCTTGCACGTCATCATAGAACTCATACTGGAGAGAAACATTACAAGTGTAATGAGTGTGGCAAGACCTACTCTCACAATTCAGTCCTTGTAATTCATAAGACAATTCACACTGGGGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACCTTCCATCACAATTCAGTCCTTGTAATTCATAAAACAATTCATACTGGAGAGAAACAAGCGTAATGAATGTGGCGAGGTTTTCAATCAACAAGCACACGTTGCACGTCATCATAGAATTCATACTGGAGAGAAACCTTAGAAATGTGAAGAATGTGACAAAGTTTACAGTCGCAAATCAAACCTCGAAAGACAGGAGAATTCATACTGGAGAGAAACCATAAAAATGTAAGAGTTTTTGACAAGGCTTTCGGACGTGATTCACACCTGGCACAACATCCCAGAGTTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGTCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAGGCAATCCGTAGTGTAGGGAAACTTGACTAACGTAATGATTCTCACAACGTCTTCAGTAATGCTACAACCATTGTAAATCACTGGAGAAGCCATAATGAAGAGAGATCTTACAAATGTAATAATTGTGGCAAATTTTTCAGACATCGTTCATACATTGCCGTTCATTGGCGAACTCATGCTGGAGAGAAATCTTACAATGTCATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTTTGCAAAACAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATCGTGGCAAAGCCTTTACTTCACATTCTCACCTCATTAGACATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGACTTCACTCCTTGCAGAATATCAGAAAATTCATTTTTCAGGTAATTGTTCCCAATGCAATGAATATAGCAAACCATCAAGCATTGATTGACATTAGAGTCAGTTCAGCAttgacttgagtttgagttgacttaacattgagttCAAGCCTTAATTGACATTAAAGTGTTTATGTTAAGAGGACTGGGCTGTGTGGCAtggctcacgcctgtaatcccagcactttggtaggccaaggtgggtaaatcacttgaggtcaggagtttgagatcagcctggacaacaGACCTGAGCCACTTTTCCCAGCCTGttttttgtttctttaacaaaaactgatagggatttttatgggtatcgtattgaatctagattacattgggttatataatcatttaacatattaatttttccaaaccatcaatatgggttgtgtctctatatatgtttttaatcattttgatcaatttttgttgatttcaaggtacaaacgtctcacctttttacgtttattcctaagtatttcttattttaagttctccagcaaatggaagtgtgttaaaattttcttttaaaattgtttattattaaaatatggaaattcaactaatttttggtgctgatactgtattgtgcaaatccactgaatatgtttgttagttccagtactattttggttgagtctgtgattttctacacagaaggtcatgtcgtctacaaacaaatgtaattttacttctttctttctgatttggatgagtttgatttcttttgctatttaattgctctggctaggacaggcagtattgattgaatagaaggggtgagagcattcttgcatcatgtgagatcgtacaggaaagcattccattttccctgcttggttatttactcatttgtcatttcatggatgttctttctattgttgaggtaaatttccttttctattttgtttaggatttctatgatgactggattttgaattttgtggaacgctttttctccatctactaaggtgatgtggttttaatctttcattctgttctagtggtatataacattgatttgcttgaatatgttgaaccatccttgcatcccagaaataactggcacttgaatatctacatttttttaatatcctcttgaatacagttttctagGAcaagggatcttcaagaagttctggaaaaatacatattatgagaaaattgtgcatgaatttcacaatttttgcaccaaaataaactagtgctagtctgttataacatgtctgaacaggctctagtttgatgccctcaaaaggataagacatgagtataaaaagagactccatcaaagcaatataaattctgatgaaatttaaacaagaagaaacattaaatttatgatgagaccagatgcagtggctcaggcctgtaatcccagcattttcagaggctgagacaggtgggccacatgagcccaggtattcaagaccagcctgggaaacgtggggaaatccccttttctacaaaaaatacaaaaattagctgggcatggtggcacatgcctgccgtctcagttattgtgaagtctgtgcagggaggatggcatgaacctgggaggtcaagattgcagtgagctatgatcatgccactgcactccagcatgggtgatggagagagatactgtcttaaaaaaagaatacttgtggtaacgtttgggtagaggaataatgaaatcattgatgctttataaaaaggttatggggacaatgcccaaaagaaataaacagtttgtaaacggataacttattttgagttagggcaagacaatgttgacagtgatgcatgaagcagcaggcagaccttccacatcatttttacagaaaaaaaaattaatcttgttcatgctgcaatgaagaggactgacagcaaacagcagaaacaTAgtcagaatttagagaacagcctggttaacatggtgaaacaccatctctagtaaaaatacaaaaattagctcagcatggtggcatgcgcctgtaatcccagctactcaggaggctgaggcaggggaatctcttgaacccaggaggtggaggatgcagtgaactgagatggcaacattacactctagcctgagcaacaagagcaaaactccatctcaaaaaaaaaaaaaTTGTCAAGTTCCTTCTCTTCCATTCTTTGCCATCGTGGTGTGTGCTTGACTCTGCTTCTTGCCACATCTTCTCAGAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAACCATCCCACTCCCCTGTGGATTCAGATCAAAACTGGTAATAAAATCAGGTACGACTCCAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCATGTGAGATGGCACACATATTTATGCTGTCTGAGCATCACAATCACGTTACCATATCAAGCTGAAAATGTCACCACTATCTGGACAGTTGGACATGTTTTATTGGGAATATGTTTTTTCTCTGTAAATTTGTTATAAACGCATTGGTTGGCTGTGTTCAGTAATAAACGTGAGACTTTTCATTTCAAAACAAAA

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