Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SEC13P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:33033859-33034850  UCSC
Coordinates (T2T) chr3:33035579-33036570  UCSC
Coordinates (hg19) chr3:33075351-33076342  UCSC
Strand +
Parental Sequence NM_183352.3
Parental seq. overlap 887 bp
Parental seq. overlap (%) 65.1%
Genomic Region Intragenic (GLB1)
Retrocopy Summary SEC13P1, located on chr3:33033859-33034850, is a retrocopy of the parental gene SEC13. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SEC13
Full Name SEC13 homolog, nuclear pore and COPII coat complex component
Also known as D3S1231E|SEC13L1|SEC13R|npp-20
Coordinate chr3:10300931-10321112
Strand -
Gene summary The protein encoded by this gene belongs to the SEC13 family of WD-repeat proteins. It is a constituent of the endoplasmic reticulum and the nuclear pore complex. It has similarity to the yeast SEC13 protein, which is required for vesicle biogenesis from endoplasmic reticulum during the transport of proteins. Multiple alternatively spliced transcript variants have been found. [provided by RefSeq, Oct 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SEC13P1
Bonobo Pan paniscus SEC13P1
Gorilla Gorilla gorilla SEC13P1
Orangutan Pongo abelii SEC13P1
Gibbon Nomascus leucogenys SEC13P2
Green monkey Chlorocebus sabaeus SEC13P1
Crab-eating macaque Macaca fascicularis SEC13P1
Rhesus Macaca mulatta SEC13P1
Baboon Papio anubis SEC13P1
Golden snub-nosed monkey Rhinopithecus roxellana SEC13P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SEC13P1
TATCATGGTGTCAGTAATTAACACTGTGGATACCTCCCATAAGGATATGATTTATGATGCCCAGATGGACTACTATGGCACCCGCCTGGCAACCTGCTCATCAGAAAAATCCGTCAAAATCTTCAAAGTGCACAACAGAGGGCAGATCCTCATTGCCAACCTCAGAAGTCATGAGAGTCCTATGTGGCAAGTGGCCTGGGCTCACCCCACATATGGCAATATCCTGGCATTGTGCTCCTATGATTGGAAAGTCATTATCTGGAAAGAGGAAAACGGCACCTGGGAGAAGACCCACGACCCCTCAGGATATGACTCCTCCGTGAACTCTGTATGCTAGGTCCCCCATGACTACGGCCTGATCCTGGCCTGTAGGAGCTCAGATGGGGCCATCTTCCTGCTGACTTATACAGGGGAAGGCCAATGGGAAGTGAAAAAGATCAACAACGCTTACACCATTGGCTGCAATGCCATCAGCTAGGCCCCTGCTGTTGTACCTGGAAGCCTCATAGACCAGCTGTTCAGGCAGAAACCCAATTACATCAAGAAGTTTCCATCAGGTGGCTGTGACAACCTCTTCAAGGATGGCCAGTGGAAGGAGAGCAGAAGCTGGAAGCACAGTGACTGGGTTTGAGATGTGGCCTGGGCCCCCTCCATCAGCCTGCCCACCAGCACCATTGCCAGCTGCTCCTGGGATGGTCGTGTGTTCATCTGGACCTGTGATGATGCCTTGGGAAATATATGGTCTCCCAAATTGCTGCACAAGTTCAATGATGTCATGTAGCATGCGGGCAGGTCCATCACAGCCAACATATTGGCCATCTCTGGTGGAGACAATAAGGTGACCCTGAGGAAGCAGTTGGTTGATGGGCAGTGGGTGTGTATCAGTGATGTCAACAAGGGCCAGGGCTCTGTGTCAGCTTCAGTCATAGAGGGCCAGCATAACAAGCAGTGACAAGACAGGCAGAGCCTCCCACCTGCCAGCTCCAGGACTG
>NM_183352.3
GTTCCGAGGCGCCGCCGGGAGCTGCCACGTCCGAGACCTGGAGCAGCCACCGCCGCAATCATGGTGTCAGTAATTAACACTGTGGATACCTCCCATGAGGACATGATTCACGACGCCCAGATGGACTACTATGGCACCCGCCTGGCAACCTGCTCATCAGACAGGTCCGTCAAAATCTTTGATGTGCGCAATGGAGGGCAGATCCTTATCGCCGACCTCAGGGGTCATGAGGGTCCTGTGTGGCAAGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCATCGTGCTCCTATGACCGGAAAGTCATTATCTGGAGAGAGGAAAACGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGTGAACTCGGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGTGGGAGCTCGGATGGGGCCATCTCCCTGCTGACTTACACCGGGGAAGGCCAATGGGAAGTAAAGAAGATCAACAACGCTCACACCATTGGCTGCAATGCCGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGCCTCATAGACCACCCATCGGGGCAGAAACCCAATTACATCAAGAGGTTTGCATCAGGTGGCTGTGACAACCTCATCAAGCTGTGGAAGGAGGAGGAGGACGGCCAGTGGAAGGAGGAGCAGAAGCTAGAAGCGCACAGTGACTGGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTGCCCACCAGCACCATCGCCAGCTGCTCCCAGGATGGTCGTGTGTTCATTTGGACCTGTGATGATGCCTCAAGCAATACGTGGTCCCCTAAATTGTTGCACAAGTTCAACGATGTGGTGTGGCATGTGAGCTGGTCCATCACAGCCAACATCCTGGCTGTCTCTGGTGGAGACAATAAGGTGACCCTGTGGAAGGAGTCAGTTGATGGGCAGTGGGTGTGCATCAGTGATGTCAACAAGGGCCAGGGCTCCGTATCAGCATCAGTGACAGAGGGCCAGCAGAACGAGCAGTGACAAGACAGGTGGGGCCTGGCTCCCCACCCGCCAGCTCCAGGACTGCCCCTTCCTGGGCCAACTAACCAGACAACTGGGAAGAGCCCCCAACTCCAACAGGATTATTTTCCCAGGAGGAGTTACAGATGCAGCCACAGATTGATCATCTGCCTTAACGTGATCGGAGATGCTTTGTAATCTACTGTCCAGCTGAAAGCACTCATGTTACGAGGAAGAAACTACAAGTGATGTTCAAATCTATTTTGGGTCATTTTTATGTACCTTTGGGTTCAGGCATTATTTGGGGGGTTTTGTTTCCAAAGGAACTAAATAAAGTCATATTGCTTATAA

Publications

PMID - Link Title