Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name UBE2FP1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:37141547-37144112  UCSC
Coordinates (T2T) chr3:37142891-37145456  UCSC
Coordinates (hg19) chr3:37183038-37185603  UCSC
Strand -
Parental Sequence NM_080678.3
Parental seq. overlap 796 bp
Parental seq. overlap (%) 25.8%
Genomic Region Intragenic (LRRFIP2)
Retrocopy Summary UBE2FP1, located on chr3:37141547-37144112, is a retrocopy of the parental gene UBE2F. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2F
Full Name ubiquitin conjugating enzyme E2 F (putative)
Also known as NCE2
Coordinate chr2:237967014-238042782
Strand +
Gene summary Enables NEDD8 conjugating enzyme activity. Involved in protein neddylation. Predicted to be located in cytosol. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes UBE2FP1
Bonobo Pan paniscus UBE2FP1
Gorilla Gorilla gorilla UBE2FP1
Orangutan Pongo abelii UBE2FP1
Gibbon Nomascus leucogenys UBE2FP2
Green monkey Chlorocebus sabaeus UBE2FP3
Crab-eating macaque Macaca fascicularis UBE2FP1
Rhesus Macaca mulatta UBE2FP1
Baboon Papio anubis UBE2FP1
Golden snub-nosed monkey Rhinopithecus roxellana UBE2FP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2FP1
GTAGGAAAAATGTTGGGTCAACCACCTATTGAAGAGAAATACAAAGAAACTATGAAAGGCATTATTCATTTTGTCCAAATGCAACAAGAATATGGCTCTGAAAAGTCATCTCTTGCTCTCAGGTCCACATGTGGCAAGGACATTTTGGAGCTCTTTGAAACTAGATCTGGATGATAAAAATAAAAACAAACAAACAAAAAGGCAGGAAGCCCATTCTCACATGCTGCCCAGAGGAAACTGGCTGGAGCTGGGACCTGCTGGGGTTGGTGTTCTTGCAGTGATCTTATGATCGTGAGCCAGTAGCTACTTAGAGTGCCAAACCCTGGCTGTCCTGAGGGACAGGATAGATACTCAGGAATCAGCCCAAACAATGTCTGATGCTACTGAGACTGTACCTGTGGCCGCCTTCTGCATTTGCTTTGACTCCGGGCCCTGCCTGGGGATGAGCCTCTTAGGCCTTAGAGGACCAGGATTCAGCAACAGCATATGCCATACTTGGCCAGATTAACACACATTGGAGGAAGAGCCCAGAAGAAAGACAGGTGGATTTACTCCAGCTTTTAAACATTTGAACCAATGAAATCAAATGCGAAATAAATGTTCATTGTATAGGGCAAAGACGTTGGGTTCCTTAACATGTTTACTTTTTTGAACTCGTACTGTTTAGGCTGTTGGTGATACTCTTGAGAAGTTGTAATGAACTCAAAATTGAGGCTGGAGCTTTCTTATTCTTTTCCCCAACAAAATTGGTTTTCTCCCGAAGTGATGCTCATGATGTGTTCAGTGTAACTTGCAGATTGGAATAAGAAACCTGCTACAAATTGTGATTGGATACAAATGCCCTTATCCTCTGTGAATGTTGGCCCTATCTACATGTTATGAAGTTTCCCAGAATGCATAAAGTCTTTCACTGTAGACATTTTTATTGAAATGCATATTTTATTTAAGTATATTTTGGACCAATTAAATTAAATTTTTACAATGTAATGCGGCATGGTGTTGGGCGCCAGGCCTGCCTCACCTGTCTTGGGGTGCCCAGGGTAAAGGCAGGAGTAGCGCTGACACCTGTAAGCAAACTGAAGTGCGATGACAGTCTCGAAGGGTCTGGGACGTCAGCCATAGCATCCGGCCCCAGTCAGAGGGTTCTGTGAGAGACAAGTTGATTGTTAAAGAGGTTGCAGAGCTTGAGCTTATTTACCTTGTACATGTCAAGAGTATTTCCTGATCTAAAAAGCTTCATTGCTTTCTGCTGACTGTAACCCCAGACGAGGGTTACTACTAGGGTGGAAAATTTCAGCTCGAAACTGGACTTCCTGATGCATACAATGTGGTGCCTTCCAAAGTGAAATGCCTGACCAGGATCTGGTACCCTAACATCAGAGATAGGGGAAATATGTCTAAAGTTTACTGAGGACATTCGATTGACAGCACTGGCTGGGCTCCCACGAGATCATTAAAGGATGTTATTTGGAGATTAAATTATTTGTTTACTAATCTTCTGAATTTTGACGATCCACTGAATGTTGAAGCTGCAGAACATCATTTGTAGGACAAGGAGGACTTCTTGAATAAAGTCGATGACTACATCAAGTGTTAATGCCAGATGATAAAAGGAGAAGATTGCAGGCCCATGGACTGTGTGTTACAGTTTGTCTCTAATGTGAAAAAGCAGCAAGAGGCATTGCCTTCTCTCCCCTGTCCCCTGACTCTCCCTCTCATTCCCCTGGATTGTCCCAGTCCTGTGACCATGTTGTCCTGACGAAGACCATCTTCATGACTGCCCGTTGTAGATGGAGAATTCAACATAAAGACAGCAAGAAAACGTATTTAGGTTTCTAAAGAGTTATCTGCTTGTCTTAt
>NM_080678.3
ACTTCCGGTCCCGCCGCCGGGAGCCGGTGCGGCTGTGAGGGGCCGCGTCTCGCAGCAGCCGCCCGGACCGGGCATGGTGTTGGGCGCCGGGCCCGCCTCGCCTGTCTCGGGGAGCCCAGGGTAAAGGCAGCAGTAATGCTAACGCTAGCAAGTAAACTGAAGCGTGACGATGGTCTCAAAGGGTCCCGGACGGCAGCCACAGCGTCCGACTCGACTCGGAGGGTTTCTGTGAGAGACAAATTGCTTGTTAAAGAGGTTGCAGAACTTGAAGCTAATTTACCTTGTACATGTAAAGTGCATTTTCCTGATCCAAACAAGCTTCATTGTTTTCAGCTAACAGTAACCCCAGATGAGGGTTACTACCAGGGTGGAAAATTTCAGTTTGAAACTGAAGTTCCCGATGCGTACAACATGGTGCCTCCCAAAGTGAAATGCCTGACCAAGATCTGGCACCCCAACATCACAGAGACAGGGGAAATATGTCTGAGTTTATTGAGAGAACATTCAATTGATGGCACTGGCTGGGCTCCCACAAGAACATTAAAGGATGTCGTTTGGGGATTAAACTCTTTGTTTACTGATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCAGAACATCATTTGCGGGACAAGGAGGACTTCCGGAATAAAGTGGATGACTACATCAAACGTTATGCCAGATGATAAAAGGGGACGATTGCAGGCCCATGGACTGTGTTACAGTTTGTCTCTAACATGAAACAGCAAGAGGTAGCCCCCTCTCCCGTCCTCATGCTCCCTCTCAGTCCCCTGGATTGCCCCAGTCCTGTGACCATGTTGCCCTGAAGAAGACCATCTTCATGACTGCTCATTGTAGATGGAGAATTCAACATAAATACAGCAAGAAAATGTGTTTGGGCTTCTGAAGAGTTGTCTGCTTACCTTAACATGTTTACTTTTTTGAACTTGTACTGTATAGGCTGTTGGTGAAATTCTTAAGAAGTTGTAATGAACTCAAAATTGAGGCCAGAGCTTGCTTTCCCTTTTCCCAAACAAAATTGGTTTTCTGCACAAGCGATGCTAATGATGTGTTCAGTGTAACTCGCAGATTGGCAATAAGATACCCGCTACAAACTGTGATTGGATGCAAAATCTCTTAGCTTCTTTCACGAATGTTGGCCCTGCCTAGATGTTGTGAAGCCTCCCAGAATGCATAGAGTCATTCACTGTAGATCTCTTATTGAAATGCGTATTTTATTTAATGTAAGTATATTTTGGAACAGATTTGTAATTTGTACAATTCAATGCTTTAATTATTTTTTCTATTCTCATTTAGTTTGTATTTTCATTGTATAGAGCAGACAGAAAGATGTTGGGTCAAGCAACTATTGAAGAGAAATACAAAGAAAATATGAAAGGCACATTATTCATTTTGTCCAAATGCAATGAGAATCTCACTCTTAAAAATCAGCTCTTGCTTTCGGGTCCGGATGTGGTGAGCACATTTTGGAGCCCTTTGAAGCTAGATTTGGATGATCAAAACAAAAAGGCAGGGAGCCCATTCTAACATGCTGCCCAGAGGAAACTGGCTGGAGCCTGGACCAGCTGGGGTTGATGCTTTTGCAGTGGTCATGTGATTGTGACCTGGTAGCTACTTATCAGAGAGCCAGACCCTGCTGTCCTGGGAGACAGGAGCGATGCCTCAGGAATCAGCCCAATGTCTGATGTCACTGAGACTGTACCTGTGGCCTTCTTCTGAGTTTGCTATGGCTCCAGGCCCTGCCGGTGGGGTGAGCCTCCTAGGCCTTGGAGGACCAGGAGTCAACAGTGGCATATGCCATCCTCGGCCAGGTTAATATACTGCAGAGGAAAAGCCCTGAAGAGAGGCAAGTGGATTTACTCCAGCATGTAGACATTTGAACCAGTGAAATCAAACACAAAATAAATGTCTGTCTAGTTTCATTTGCTGCCTGCCTAACACTCTCAAACTTAACTGCCAGCTTCCTTAGACCTCTGGATTCCCCCATCTGCCATCTACTGGGTTTAGTTTGTTTTTCTTAATTTATAGAATCTCTGATTGTGAGATCAGTCTGTCACGGAGACCCAGCAGGTGAGGAATGTAGGCCTTGCTTCCTCTTTGCACCCATTA

Publications

PMID - Link Title