Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF610P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:52732512-52734077  UCSC
Coordinates (T2T) chr3:52765422-52766987  UCSC
Coordinates (hg19) chr3:52766528-52768093  UCSC
Strand +
Parental Sequence NM_001161425.2
Parental seq. overlap 1364 bp
Parental seq. overlap (%) 46.4%
Genomic Region Intragenic (NEK4)
Retrocopy Summary ZNF610P1, located on chr3:52732512-52734077, is a retrocopy of the parental gene ZNF610. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF610
Full Name zinc finger protein 610
Also known as -
Coordinate chr19:52336243-52367778
Strand +
Gene summary Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF610P1
Bonobo Pan paniscus LOC100968172P1
Gorilla Gorilla gorilla ZNF610P1
Orangutan Pongo abelii ZNF610P1
Gibbon Nomascus leucogenys ZNF610P1
Green monkey Chlorocebus sabaeus ZNF610P1
Crab-eating macaque Macaca fascicularis ZNF480P1
Rhesus Macaca mulatta LOC719951P1
Baboon Papio anubis ZNF610P1
Marmoset Callithrix jacchus AK3P4
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF610P1
GAGTCAGGCTGTGTGATGAAGAAGCCCAGAAGAGAAAGAAGCGGAAAGAAAAGGAATCAGGAAAGACTCTTACTCAGCGTCACTTGACATTCATGGATGTGGCTACAGAATTCTCTCAGGAGGAGTGGAAATAACTGGACCCTGCACAGAGGGCTTTATACAGGGAAGTGATGTAGGAGAACTACAGGAACCTGGTCTTTCTGGGAATCTGTCTTCCTGACCTGAGCATTATCTCCATGTTGGAGACAAAGCGAGAGCTCTGGACTCTGCAGGGTGAAGATAGCAAACAATCCAGATGGCAGGGAATGCATCAAAGGTGTGAACACAGGGAGAAGCTGTACATTGGGAAGTAATACAGAAAATGAGCCTATTAAAAATCAACTTGGATTAACCTTCAGTCACATCTGCCTGAATTGCAGCTATTTTAAGCTGGAAGGAAAATTTATGGAAGTAATCAAATTGAAAAGTTTACAAACCATAGTTCCTCAGTTCCACCACTTCAAAAAAATTCTTCTAGTGTTAAATAAATACAGAAATGATTTCATTGATTTCCCATCACTCCCACAAGACGACAAAGCACACATTAGAGGAAAAATCTTATGGACGTAGTTAAGATGGCAAAGTTTTTAGAGTGTCTGCAAGTCTTACTAATCATCAAGTAATCCATACTGCAGATAAACTTTACAAATGCAGTAATGTGGCAAGGTCTTTAGTTGCAATCCACACCTTGCAGATCACTGGAGAATTCATACTGGACAGAAGCCTTACAAACGTAGTGACTGTCACAAGGTGTTTAACAGCAATTCAAACCTTGCACAACATCAAAGAATTCATCCTGGAGAGAGGCCTCGCAAATGTAACGAATGTGGTAAAGCATTTAAAGAGTGTTCAGGACTTAGCGCCCATCTTGTAATCCATTCTGGAGAAAAACCTTACAAATGTAATGAGTGTACAAGAACTTCAGGCACAAATTTTCCCTCACTCAACAGAGAAGTCATACTGCAGAAAAACCTTACACACGTAATGAATGTGGCAAGGTCTTTGGTCAATTGCACGGCATCAAATAATTCATAGTACAGAGAAGCCTTACAAATGTAACAAACGTTGAAAGCATTTAGCAAGCATTCAGGACTTATGGCCCATCTTCTAATCCATACTGGAGAGAAACTTTACAAATATAGTGAATGCGGCAAGGTCTTCGGACACAAGTTATACCTAATCAACCATCAGATAATTCATACTGGAGAGAGACCTTACAAGTGTAATTCATGTGGCAAGGTGAATCAAAATTTACACCTTGCATGACATTGGAAGATTCATACTGAAGAGAATTCACTGCACACCTTACAGATGCAAAAATGTGGCAAAGTCTTCAGTCGTACTTCATAGCTAACACAACATTGGAAGACTCACATAGGTCACAAACGTTATAAATGTAATAAATGTGGCAAAGAATTCAGTTTGCATTCAAGCCTCAGTACTCATCTACTGATCCACACACGGAAAGGTAACCTTACAAATGTAAAGATAATATATATAAAAATAATATATAAAGAGAGAACAGTT
>NM_001161425.2
GCAGACCCGGAAGCGGATCGCGTGGGTAGAAGGTCACACCGCAGCGCGTCAGTTTCCCTTTGTTTAGATTCAATCTGGGCTTCCCAGCTCCCCCGCGCTTCTGTACCCGGGATCTGAGAGTCAACACAGACCTTGAAATCCCCGCACCGCTCCCTCCACCCCGTGTAAATTCAGGCGTCTCCGTGAGAGTCCGGCGCTCGCTTCCCTGTGTGTTAAAATCGCTCGGCGACGGGTCCTGTCCCCGCTCGTTCTGCCTTGGGCCAGacacaggagtgttgccatgttgtccaaactggtctcgaaattctggagtcaagcagtctgcctgcctcgttctccaaacgtgctgggattacaggcatgagccactacgcctggccaagtattcggtatttataaaatctacagtagtacacagttatgtcgtaggccatcacattcggtcaccacacactcactgactcatccagagcaatttctagtcctgcaagcgccattcatgGATTGACTTATAAACAGTCATGCTATGTGATGAAGAAGCCCAGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGGACGCTTGACATTCATGGACGTGGCCATCGAATTCTCTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCTTTATACAGGGACGTGATGTTGGAGAACTACAGGAACCTGGTCTTTCTGGGAATCTGTCTTCCTGACCTAAGTATTATTTCCATGTTGAAGCAAAGGAGAGAGCCCTTGATTCTGCAAAGTCAAGTTAAAATAGTAAAAAATACAGATGGAAGGGAATGTGTCAGAAGCGTGAACACAGGGAGGAGCTGTGTATTGGGAAGCAATGCAGAAAACAAGCCTATTAAAAATCAACTTGGATTAACCCTTGAGGCACATCTGTCTGAATTGCAGCTGTTTCAAGCCGGAAGGAAAATTTACAGAAGTAATCAAGTTGAAAAGTTTACAAACCATCGTTCCTCAGTTTCACCACTTCAAAAAATTTCTTCTAGTTTCACAACACACATTTTTAATAAATATAGAAATGATCTTATTGATTTCCCATTACTCCCACAAGAAGAGAAAGCATACATTAGAGGAAAATCTTATGAATATGAATGTAGTGAAGATGGTGAAGTTTTTAGAGTCCGTGCAAGCCTTACTAACCATCAAGTAATCCATACTGCAGAGAAACCTTACAAATGTACTGAATGTGGCAAGGTCTTCAGTCGCAATTCACACCTTGTAGAACATTGGAGAATTCATACTGGACAGAAGCCTTACAAATGTAGTGAATGTGACAAGGTGTTTAATCGCAATTCAAACCTTGCACGACATCAAAGAATTCATACTGGAGAGAAGCCTCACAAATGTAACGAATGTGGCAAAGCTTTTAGAGAGTGTTCGGGACTTACTACCCATCTTGTAATCCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGAACTTCAGGCACAAATTTTCTCTAACCAATCATCAGAGAAGTCACACGGCGGAAAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTTAGTCTGCTTTCATACCTTGCACGGCATCAAATAATTCATAGTACAGAGAAGCCCTACAAATGTAACGAATGTGGAAGAGCATTTCACAAGCGTCCGGGCCTTATGGCCCATCTTCTAATCCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGACAAAGTCTTTGGGCGCAAATTATACCTAACCAACCATCAGAGAATTCATACTGGAGAGAGACCTTACAAGTGTAATGCATGTGGCAAGGTCTTCAATCAAAATCCACACCTTTCACGACATCGGAAAATTCATGCTGGAGAGAATTCACTGCGTACCTTACAGATGGAATGAATGTGGCAAAATCTTTAGTTAGAATTCACACCTAGCACAACATTGGAGGACTCAGGAGAAAAACCTTACAAATATCATAAATGTGGCAAAGAATTTAGTTTGCATTGAAGCCTCATCACTCATCTCTTGATCCACACTGAAAGGAAACCCTACAAATGTAAAGTTAATAACATATATAAATAATCTATAAAGAGAGAACAGTTATATCAGAATAGAGCATTTAATGAAAACTACCAGTATAGCATATTCTTGAGTAGGATTCACATTTAACTGCTGGCACCGTAATTTGTAACTCTTTGATTTAGAATGTACATACTTCTCATGTTTTAAGTAATAAAGTTTAAAGtttttttttagttttttcttttttttttgagacgaagtctcgctgtattacccaggctggagtgcagtggcatgatcttggctcactgcaacctccgtctcccggattcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccactactgcccggctaatttttgtatttttagtcgagacggggtttccctccgttggccaggccggtttcaaactcctgacctcaagtgatccactggccttggcctcccaaagtgctgggattataggtgtgagccacagcgcccggccTAGTTTAAATTTTTCTTAGTGTGAATGAATTACATCCTTTCTACCAGCGTTGTTTAATCTTACCTCAGGAGGATACTTTATAGTAGAGAATAATAACCCATTATGATTTTAAGGTTGAAGCAGCCAGAAAAgtgtgtgtgtgtgtatgtgtgtgAGACATAAAACAACATACGCTTCTGGGTGCAATATACTTAAGTAAGTATGATGTTGAGTAATTACACTTAGTACTTGAGTTAGTTTCTCTGTACTCTGGTGTAGGATGTTTATGTGGGTAAAGTCAAAATCACTTTAATAGTACAATTTCAGCCTTGTACACCCTCAAATGTGTGTGAGTGTTAAAGAGTATGCCCTGTA

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