Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TCEAL8P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:66622702-66623221  UCSC
Coordinates (T2T) chr3:66667284-66667803  UCSC
Coordinates (hg19) chr3:66673126-66673645  UCSC
Strand -
Parental Sequence NM_001006684.2
Parental seq. overlap 437 bp
Parental seq. overlap (%) 39.5%
Genomic Region Intergenic
Retrocopy Summary TCEAL8P1, located on chr3:66622702-66623221, is a retrocopy of the parental gene TCEAL8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TCEAL8
Full Name transcription elongation factor A like 8
Also known as WEX3
Coordinate chrX:103252995-103255155
Strand -
Gene summary This gene encodes a member of the transcription elongation factor A (SII)-like (TCEAL) gene family. Members of this family contain TFA domains and may function as nuclear phosphoproteins that modulate transcription in a promoter context-dependent manner. Multiple family members are located on the X chromosome. Alternative splicing results in multiple transcript variants encoding a single isoform. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus TCEAL8P1
Gorilla Gorilla gorilla TCEAL8P1
Orangutan Pongo abelii TCEAL8P1
Gibbon Nomascus leucogenys TCEAL8P1
Chimpanzee Pan troglodytes Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TCEAL8P1
TTATGGTCCAGGGCCTATTTCCCTGTAGCCACTCCCTATTGCTGGGGAAGGATAAAAGTGACCTGGATCCTTTCAAGATCAATTTATTCTAAAAAGGAAATAATAAAAAATACTCAAAATGCACAAGACTTGTGAAGAAAATGAAGAAAATCCACAGAACATGCCAAAGGCTGAGGGAGTCCATCCTTGGAAAGGTGTCCCCCAGGAGGCAGAAAGAAGTCTCAGCCCTCCTAAAAAGGTATAAGCCAGGAAGCAGAAGGAAACCCCAGACGAAGGCTGACTGGGCCTGGCTGGGGATTTAAAGAGGATGCTCCCTTTAGGCATTTGGATCCTGGAGAAATGATAAGAGCAGATGAGTTGGAAAGACTTAGGGAAGAGATAGGAAGAACAAGAACAAGTTGGTGAAGATGCAGTGGAGGCAAAGACATTCTCACAGCAAGCCATAGCCTGTGTGCTTTAGGCCTTCCATTCATTTTTGTCTGATATTAAAATCTGATCCCTGCTTTCTTTCTGTTAGc
>NM_001006684.2
CCTTATAGTCCAGGGCCTGTTTCCCTGTAGCAGCTCCTTATTGCTGGAGAAGGAGAAAAGTGCCCAAGATCCTTTCAGGATTAATTTATTCAAAAAGGAAATAAAAAATACTCAATATGCAAAAGTCTTGTGAAGAAAATGAGGGAAAACCACAGAACATGCCAAAGGCCGAGGAAGATCGCCCTTTGGAGGATGTACCACAGGAGGCAGAAGGAAATCCTCAACCTTCCGAAGAAGGCGTAAGCCAGGAAGCAGAAGGAAACCCCAGAGGAGGGCCGAATCAGCCTGGCCAGGGATTTAAAGAGGACACACCCGTTAGGCATTTGGACCCTGAAGAAATGATAAGAGGAGTAGATGAGCTTGAAAGGCTTAGGGAAGAGATAAGAAGAGTAAGAAACAAGTTTGTGATGATGCATTGGAAGCAAAGACATTCACGCAGCCGTCCTTATCCTGTGTGCTTTAGgccttgaattcatttttgcctaatattaaaatctggccccagctttctttctgttagcattttctgatgtatctttgacctccattttacttttaatcatctgatgaaattttgttttaggtaatttccttggtaccagcatctcattggattttggattttgacccattttccaggtctatttttcaattggaaactttcacacatttgcatgggaatatgttcattccatgttgtaaagtaaaacataacaggttatggcaaagcagcatatttaatatcagctcacatatgtaggataaaattccaaactttgtgtgtgtgcgtgtgtgtatacatacatccatataacatatatcacaaacttaaccaagcttatttctgtgtggtgtgaaattttatttgttttcttctttttgttctttttgcttatatgtactttttaatgaacacgtgtCTCACACACAAAAAGAATTAAGGATTTTTTTTACAAGTAAGAGTCAAATAATTTGCAACCAGCTTATGAGGGCAATGGGGGCACCTAAACTCTTGATGAAAGAACTTTAAAAAGAAATGTAAACCTCAAATTACCTCTGGATCTCTTAGCCAGAGGAATAAACTGGCAATTATTACAGATA

Publications

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