Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name WDR82P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr3:94935598-94938285  UCSC
Coordinates (T2T) chr3:97638183-97640870  UCSC
Coordinates (hg19) chr3:94654442-94657129  UCSC
Strand -
Parental Sequence NM_025222.4
Parental seq. overlap 2456 bp
Parental seq. overlap (%) 56.9%
Genomic Region Intergenic
Retrocopy Summary WDR82P1, located on chr3:94935598-94938285, is a retrocopy of the parental gene WDR82. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name WDR82
Full Name WD repeat domain 82
Also known as MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A
Coordinate chr3:52254424-52278649
Strand -
Gene summary TMEM113 (WDR82) is a component of the mammalian SET1A (MIM 611052)/SET1B (MIM 611055) histone H3-Lys4 methyltransferase complexes (Lee and Skalnik, 2005 [PubMed 16253997]; Lee et al., 2007 [PubMed 17355966]).[supplied by OMIM, Jul 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes WDR82P2
Bonobo Pan paniscus WDR82P2
Gorilla Gorilla gorilla WDR82P2
Orangutan Pongo abelii WDR82P2
Gibbon Nomascus leucogenys WDR82P2
Green monkey Chlorocebus sabaeus WDR82P2
Crab-eating macaque Macaca fascicularis WDR82P2
Rhesus Macaca mulatta WDR82P2
Baboon Papio anubis WDR82P2
Golden snub-nosed monkey Rhinopithecus roxellana WDR82P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>WDR82P1
CTTCTGGCCGTCGCCCCAAGATGGCGGACACGATGAGGTGGCGCTGCGTCGGTTGCCCCTGAGGTGTCTGTGAGGACTAACGGTCGGCGAGGCTCCACAGTTGAGGCGGAAGACAGTCGTCCAAGCAGGAGGAAGAAAAGGAGGCGGCCCCACTGCCGGCCGACTTCTCGCTAGCCACCGGCTCAACACCGCCGCCACCAGGGGTTGGCCCCTCAGCAGCCCGCCCGCTGCCAGTCCCGGCTGCCTTCCCCACCCGCCGCCATGAAGCTGACCGACAGCGTGTTGCGGAGCTTCCGCGTCGCCAGGGTGTTTTGCGAAAACTCGGACAAGATTAACTGCTTCGATTTCAGCCCCAACGGCCAGACGGTCATCTCAAGCAGCAACGACGACTCCATCGTGCTATATGACTGCCAGGAGGGCAAACCAAAGAGAACCCTGTACAGTAAGAAATATGGCGTGGACCTCATCAGATACACTCATGAGGCAAACACAGCTGTTTACAGCTCTAACAAAATAGACGATACTATTCGTTACTTGTCCTTGCATGACAACAAATACATCAGATACTTTCCTGGACATAGCAAAAGAGTGGTGGCCTTGTCCATGTCACCTGTGGATGACATTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGGCTCCTAACTGCCAGGGCCTCATGAGTCTACAGGGGAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTTGGCTGCAGGTGTCAACTCTGAGATGGTCAAACTTTACGACCTTCGTTCTTTTGATAAAGGGCCATTTACTACCTTTAGGATGCAGTGTAATCGAACTTGTGAGTGGACAGGACTTAAATTCAGCAACGATGGCAAGGTCATCCTCATTTCCACCAACGGCAGCTTCATTTCCCTCATTGATGCTTTCAAAGGAGTGGTGATGCACACGTTTGAGGGTTATGCCAACAGCAAAGCTGTCACACTGGAGGCTTCATTTACTCCAGATTCTCAGTTTATTATGATTGGTTCAGAGGATGGCAAGATCCATGTCTGGAATGGAGAGAGTGGTATAAAAGTAGCTGTGTTGGATGGTAAACACACCGGCCCAATTACCTGTTTGCAGTTCAACCCCAAGTTCATGACTTTTGCCAGTGCGTGTTCCAGCATGGTCTTCTGGCTGCCCACCATTGATGACTCACCCTGATGCTGCTCCGCTATTTCTGTACAGTGAGGGCGGCCATAGGAAGAAACTCAGAGGGGTCTGAGATAGTAGGGGGATTGGATCATTTGACTGGGCTGGAGAGCATCCTTTACTTGGCCTTCTCATGGATGTGCTGTACATCTGCTCAAAAGAAAATAATTACTTTGCTGAGCATCTTCAAAAGAACTCTGGTGCAACAGACTCAATTGGAACTCAGCTTTTCTAGCTGTCACTGCACCAAGCTCTGCTAGAGGAGTGACCAGACTCACGATTTGGGTATAGTGGGGCTCTCAAGACATCTTCAATTTGAATGTACATGCTGCTGAGGAGCCAGTGAAGTCATCAGCTCTGCACATCCCTTCTCCTACCCCGCTGAATGTATGGAAAGCTACAGTCCTGGTTTTGAAATGCTAGAGCAGCTCAGCGCCCCTTGCCCTCACCTTGCATGTCTTGTTACTGGGTCTTCCTGTGTACTTGTGACATTGTCCACAACCATCATGTTTATTAGGTGCCAGACATTTACAGAAATGTTTTCATATTGGGGTCAGAGAAAGAGACAGATACAGAAGGACCTTGCTTGCAGGAAGCCATGAAGTTAGTCACTGCAATTAGTCATGTGAAGCTAGGTAGTTTGGCAGGCCTCAGGCTCTAGGTGTTGGATGGGAAAAAGCCCAAGGGCCTAAAAGGGAGTGTAAGGGGATGGTAGCAGGTGAGTTCCTAGGGCTGGAAGGTTTAGCAGCAGTGTGGTGCAGTGCCCTGTCATCAAGACAAACCCACGGTCCTCCTGGGTGCCTACCAAGCTTGGTTTGCACAAAAGCAAGGTTAGAGTCTATTTATGTACATGAGATAACATCACACATTCCTGTGGGCCAGTATTGTGAAGTGAGTCTGAGTTCTCTACACTGATGCCTTCCCTGCCCACCACTAATTGTGTACATAGTTTTCCCAGCCCACCACAAATTGTGTACCTTTCCCCAGCTCCCAACCAGGAGCTAGTTCTAGGCCTGTGTTATATTTAGCCTTTTATTATATGACCTTTGATTTCTGTTGTTTGTATTTTAGCCCAGTGTATGCACCTTCATTTAAATACATCTGTGTGCATACAGATATGTGTATATGTATGTGCATATGCATATATCTCTCTCATCTGTAATTTCTGAGAGTTCAGCTGAAGCAGACGGAGTCCTACAGCCCAGGAGACACATTGCATCCTTGCTAACCGTGTTCACCACAAGTGTTAGTGAGTCTTCCCTATTAACGTTTCATTTCGGAAGACTGAATGAAGCAAAGCTTATAGTGTTTGCTGTTTCCATGGCAGCCAAGTGAAGGTCTTGGGATGACTCCCTGTGTTCCTCAAGCTGTACTTTGGGGCTCTCTCTGCAGTATTAACCCCTTTCTGCTTGGTGGTACTCTGTACCTGTGTGTGATAGTCACTTTTGCATGGCTTCTGTGTCTGGCTTGTGGCATTTAGGGATAGGGTGT
>NM_025222.4
CTCAGCTTCTGCCTGTCGCCCCAAAATGGCGGACACAATGAGCCGGCGACGCGCCGGTTGTCCGTGAGGTGGCTGTGAGGACGAACGGTCGGCGAGGCTCCACAGTCCAGGCAGAAGACCCTCGACCAAGCAGGAAGAAGAGGAGGAGGCGGCCCAACTGTTGGCCGACTTCCCGCTAGCCGCCGGCGCGGCGCCCGCCCCGCCTGGGTTGGCCCCTCGGCAGCCCGCCCGCTCGCCGCCGGGCCCCGCCCCGGCCCTGCGCCGCCGCTGCCTTCCCCAGCCGCCGCCATGAAGCTGACCGACAGCGTGTTGCGGAGCTTCCGCGTCGCTAAGGTGTTCCGCGAAAACTCGGACAAGATTAACTGCTTCGATTTCAGCCCCAACGGCGAGACGGTCATCTCGAGTAGCGACGACGACTCCATCGTGCTCTATGACTGCCAGGAGGGCAAACCAAAGAGAACCCTGTACAGTAAGAAATATGGTGTGGACCTCATCAGATACACTCATGCAGCAAACACAGTTGTTTACAGCTCTAACAAAATAGACGATACTATTCGTTACTTGTCCTTGCATGACAACAAATACATCAGATACTTTCCTGGACATAGCAAAAGGGTGGTGGCCTTGTCCATGTCACCTGTGGATGACACTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGTCTCCTAACTGCCAGGGCCTCATGCATCTGCAGGGGAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTTCGCTGCAGGTGTCAACTCTGAAATGGTCAAGCTTTATGACCTTCGTTCTTTTGATAAGGGGCCATTTGCTACCTTTAAGATGCAGTATGATCGAACTTGTGAGTGGACAGGACTTAAATTCAGCAATGATGGCAAGCTCATCCTCATTTCCACCAACGGCAGCTTCATTCGTCTGATTGATGCATTCAAAGGAGTGGTGATGCACACATTTGGGGGTTATGCCAACAGCAAAGCTGTCACACTGGAGGCTTCATTTACTCCAGACTCTCAGTTTATTATGATTGGTTCAGAGGATGGCAAGATCCATGTCTGGAATGGAGAGAGCGGTATAAAAGTAGCTGTGTTGGATGGTAAACACACAGGCCCGATTACCTGTTTGCAATTCAACCCCAAGTTCATGACTTTTGCCAGTGCGTGTTCCAACATGGCCTTTTGGTTGCCCACCATTGATGACTGACCCTGTTGCTGCTTGGCTATTTCTGTATAGTGAGGGCGGCCAGCAGGAAGAAACTCAGAGGGAACTGAGATAATAGTGGGATTGGATCATTTGACTGGGCTGGAGAACATCCTTTTACATGGCCTTCCCATGGATGTGCTGTACATCTGCTCAAAAGAAAATAATTACTTTGATGAGCGTCTTCAAAAGGACTCTTGGTGCAACAGACTCAATTGGAACTCAGCTTTTCTAACTGTCACTGCACCAAGCTCTGCTGGAGGAGTGACCAGACTCACGATTTGGTATAGTGGGGCTCTCAAGCATCTTCAATTTGAATGTACATGCTGCTGAGGAGCCGGTGAAGTCATCAGTTCCGCACATCCCTTCTACCCTCCAACTGCATGGGAAGCCAAAGTCCTGGTTTTGAAATGCTTGGGCAGCTCAGCCGCTTGCCCTCACCCTGCATGTCTTGTTACTGGGTCTCCCTGTGTACTTGTGGCATTATCCACAACCATCATGTTTCTTAGGTGCCAAACATTTACAGAAACATTTTCATATATCTTGGGGTCAGAGAAAGGGACAGATACAGAAGGACCTTGCTTGCAGGAAGCCATGCAGTTAGTTTCTGCAGTTAGTCGTGTGAGGCTAGGTGGTTGGGCAGGCCTCGGGCTGTAGGTGTTGGGTGGGAAAAAGACCCAAGGGCCTGAAAGGGAGGGAAAGGGGAGGGTAGCGGGAGGGTAGCAGGTGAGTTCCTAGGGCTGGAAGGTTTAGCAGCAGCCTGGTGCAGTGCCCTGTCATCAAGACAAACCCACGGTCCTCCTGGGTGCCTACCAAGCTTGGTTTGTACAAAAGCAAGGTGGGAGTCTATTTTTGTACATGAGATACATCACACTTACCTGTGGGCCAGTATTGTGAAGTGAGTCTGAGTTGTTTACACTGATGCCTTCCCTGCCCACCACAAATTGTGTACATAGTCTTCAGATGATACCACCCCTTTCCCCAGCTCCCAACCAAGAGCTGGTTCTAGGCCTGTGTTATATGTCATATTTAGCGTTTTTATATATGACCTTTGATTTCTGTTGTTTGTATTTTAGCACAGTGTATGCACCTTCATTTAAATACATCTGTGTGCATACAGATACGCATATATGTGTGTGCGTATGCATATATCTCTCATCTGTAGTTTCCAAGAGTTCAGCTGAAGCAGATGGAGTCCTGCAGCCCAGGAGACACCCTGCATCCCTGCTAATAGTGTTTGCCACAAGTATTAGTGAGTCTTCCTTATTAATATTTTCATTTCAGAAGACTGAAGCAAAGCTGATAGTGTTTGCTGTTTCTTTGGCAGCTAAGTGAGGGTCTTGGGATGACTTGCTGTGTTCCTCAAGCTGCACTTTGGGGCCATCTCTGCAGTATTAGCCCCCTTTTTGCTTGGTGGTACTCtgtctgtgcctgtgtgtgtgtgtgATAGTCACTCTTGCATGGCTTCCATGTCTGGTTTGTGGCATTTGGGGATAAGGTGCTGAAGCCAGAGCATTTGCAGTTTGTTTGAGGCCTCGTTGCCAATGATAGATCACTCCTGTTGACCTGGTATGTCtgcttgcttgctgcttttccttgctttctCTTGGAAGAGGAAAGGACTCTGGTCAGGCCCAGGCTGAGTGAGATGAGCTGCAGCTGGCTCATGGCCTTCTTAGAGCAGAGAGAGGAGTATGTCATTTTACTAAGTTCCTAAACAAACATTTATGCAGGCAACACTCCttgcagatccagaaactgaggcacaatagggttatgacttgctcaagaatatgtagctgctagggggtaaaTCAAGGCATCACAATTTCTGTTCAGCGGGCAGGAATAGGCTGTGAATTGCTAGCACTTTTTTTTTTTAAGCAATTACTTTTTGACTTGTTCCTCTGAAAGTGCAAGAGGCGTACACCTTTCCCAAATGTAGACTAGAATCTGCAGGATGCCACCCACTGTATAGTTCTGCTTTCCCAGAGAGGAAGAACTTTTAGAAACCAAATGATCTTAATTGTTATTGCCCACCCCTGGCTTTTCCGGGTAGAAAATTCACAGTAGGAATGATTGTTAAGAGAGAGTGCTTGGAACCATGGGTTAACAGGAAAGGCTACCTAACTTCACATATCTGCAACCAGAGCAGCCACCAAGCATTACTTAGCAGCAGGAAAATGATTGTATTTGAGTTCCTGTGTGTCCAAAACTGAGCACCATGTTCTTTGAAAACATGCCACCTCAAggctgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcaccggaggtcgggagtttgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcatgcgcctataatctcagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcggtgagttgagatcgtgccattgcactccggcctgggcaacaacagcaaaactccgtctcaaaaaaaaaaaaaaaaaaaTGCCACCTCACAGTCTCTATCGTTGGGCCCTGTGGTTGCAAAGCTGCCTCCTGAATTAAGAAGGAAAGGGAAAAGATATAGCTGGAAGCGAGTGGAAGAGATGCTGAGGGCTGGGGCTGCACAGACGTGCTCAGCAGGGCTACAGGTGCTCAAGCCCTATTGGGGATGGGTGGGGAGTGGGGCAGCGGCGTTTGCCACCTTAAGAATTGGGGCCAAAGCCACTGATGTTTATTTGACAGTGACACTGCACTGGGTACTTAAAGAAATTATTTCCCGTTGTAattataattactgcttattaaggaaaatatgggaattttagaaagaatcaagtttgccacccaaatgctaccactgttaatcttttggtgttaaatgttccccctagacatttctgtgcatagatttttggtgtgtttacatagtcgttattctgtatatacaattttatgtcccttttgtacttaacgtataaacattttttccatgttacagtcttaaacagaa

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