Retrocopy Name | DYNLT1P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr4:10411391-10411994 UCSC | |
Coordinates (T2T) | chr4:10387340-10387943 UCSC | |
Coordinates (hg19) | chr4:10413015-10413618 UCSC | |
Strand | + | |
Parental Sequence | NM_001291602.2 | |
Parental seq. overlap | 555 bp | |
Parental seq. overlap (%) | 79.9% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | DYNLT1P1, located on chr4:10411391-10411994, is a retrocopy of the parental gene DYNLT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | DYNLT1 |
Full Name | dynein light chain Tctex-type 1 |
Also known as | CW-1|TCTEL1|TCTEX1|tctex-1 |
Coordinate | chr6:158636474-158644743 |
Strand | - |
Gene summary | This gene encodes a component of the motor complex, cytoplasmic dynein, which transports cellular cargo along microtubules in the cell. The encoded protein regulates the length of primary cilia which are sensory organelles found on the surface of cells. The protein encoded by this gene interacts with viral proteins, like the minor capsid protein L2 of human papillomavirus, and is required for dynein-mediated delivery of the viral nucleic acid to the host nucleus. This protein interacts with oncogenic nucleoporins to disrupt gene regulation and cause leukemic transformation. Pseudogenes of this gene are present on chromosomes 4 and 17. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2014] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | DYNLT1P1 |
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Bonobo | Pan paniscus | DYNLT1P1 |
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Gorilla | Gorilla gorilla | DYNLT1P1 |
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Orangutan | Pongo abelii | DYNLT1P1 |
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Gibbon | Nomascus leucogenys | DYNLT1P2 |
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Crab-eating macaque | Macaca fascicularis | DYNLT1P1 |
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Rhesus | Macaca mulatta | DYNLT1P1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | DYNLT1P1 |
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Marmoset | Callithrix jacchus | DYNLT1P1 |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>DYNLT1P1 |
TCGCAGTTGGTGGTAATGCTTATCAACACAGCAAAGTGAACCAGTGGACCACAAATGTAGAACAAACTTTAAGCCAACTCCCCAAGCTGGGAAAACCATTTAAATACATTGTGACCTGTGTAATTATTCAAAAGAACGGAGCTGGATCATACATGGCAAGTTCCTGCTTTTGGGACAGCTCTACTGACGGGAGCTACACTGTGCGATGGGAGAATAAGACCATGTACTGCATTGTCGGCGCCTTCGGACTGTCTATTTGACCTCCCAGTCCATCCTATAACCTTTCTGCTTTTGTCTCTAGTTCATCTTCTAACCACTAGCCATGAATTCAATGAACTCCTTTCTCATTTTCTTTAAGTGTGTTTTGTGGCACTCTGAAAAACCAGATGACTGCACTGTGATGTGAACTGCACTGAAGTCAGATGAGTATCCCTGTAGGTCACCTGCAGCCTGCATTGCCACTTGTCTTAACTCTGAATATTTCTTTTCAAAGGTGCTAAAATCTGAAATCTGCTAGTGTGAAACATGCTCTACTCTCTGAAATCGTTCAAATACATGAATTTTCCATACTTTATACTTTTGTTAGAATAAATTGTTCAAATCT |
>NM_001291602.2 |
ACTCAGGGAGCCGGAGGGGACGCGCCGGAGGAAAGATGGAAGACTACCAGGCTGCGGAGGAGGCTATAGAAAGCGCAATTGGTGGTAACGCTTATCAACACAGCAAAGTGAACCAGTGGACCACAAATGTAGTAGAACAAACTTTAAGCCAACTCACCAAGCTGGGAAAACCATTTAAATACATCGTGACCTGTGTAATTATGCAGAAGAATGGAGCTGGATTACACACAGCAAGTTCCTGCTTCTGGGACAGCTCTACTGACGGGAGCTGCACTGTGCGATGGGAGAATAAGACCATGTACTGCATCGTCAGTGCCTTCGGACTGTCTATTTGACCTGCAGTCCAGCCTATGGCCTTTCTCCTTTTGTCTCTAGTTCATCCTCTAACCACCAGCCATGAATTCAGTGAACTCTTTTCTCATTCTCTTTGTTTTGTGGCACTTTCACAATGTAGAGGAAAAAACCAAATGACCGCACTGTGATGTGAATGGCACCGAAGTCAGATGAGTATCCCTGTAGGTCACCTGCAGCCTGCGTTGCCACTTGTCTTAACTCTGAATATTTCATTTCAAAGGTGCTAAAATCTGAAATCTGCTAGTGTGAAACTTGCTCTACTCTCTGAAATGATTCAAATACACTAATTTTCCATACTTTATACTTTTGTTAGAATAAATTATTCAAATCTAAA |
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