Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name EXOC7P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:108417761-108419727  UCSC
Coordinates (T2T) chr4:111720636-111722602  UCSC
Coordinates (hg19) chr4:109338917-109340883  UCSC
Strand -
Parental Sequence NM_001145299.4
Parental seq. overlap 1658 bp
Parental seq. overlap (%) 34.1%
Genomic Region Intergenic
Retrocopy Summary EXOC7P1, located on chr4:108417761-108419727, is a retrocopy of the parental gene EXOC7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EXOC7
Full Name exocyst complex component 7
Also known as 2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W
Coordinate chr17:76081016-76103787
Strand -
Gene summary The protein encoded by this gene is a component of the exocyst complex. The exocyst complex plays a critical role in vesicular trafficking and the secretory pathway by targeting post-Golgi vesicles to the plasma membrane. The encoded protein is required for assembly of the exocyst complex and docking of the complex to the plasma membrane. The encoded protein may also play a role in pre-mRNA splicing through interactions with pre-mRNA-processing factor 19. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 4. [provided by RefSeq, Nov 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes EXOC7P1
Bonobo Pan paniscus EXOC7P1
Gorilla Gorilla gorilla EXOC7P1
Orangutan Pongo abelii EXOC7P1
Gibbon Nomascus leucogenys EXOC7P1
Green monkey Chlorocebus sabaeus EXOC7P1
Crab-eating macaque Macaca fascicularis EXOC7P1
Rhesus Macaca mulatta EXOC7P1
Baboon Papio anubis EXOC7P1
Golden snub-nosed monkey Rhinopithecus roxellana EXOC7P1
Marmoset Callithrix jacchus EXOC7P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EXOC7P1
GAGATTGAAGAGAAGCTGAATCAGGAGGAGGAGGTGCTGTCCTATATTCAAGACAGCCTGGAGAAAAGTGACCAGCTCACCAAGAACATGATGTCTATCCTGTCATCATATGAGAGCTACCATATAAAGCTGGAGAATTCCATCATCCTGGTGCACAAGCAGACAGATAATCTGCAGCAGCTGCAAGACAATTTTGAGAAGACGCTATCCATCCTGGACCACATCATCAACTCTTACCATGTTGCCAGTGACACTTAGCAGATCATCAGAGAGGGCCCCACAGGTAGGCCGGAAGAGTATCTGGGAAGCATGGCTAAGATTCAGAAGGCTGTGGAGTATTTCCAGGACAATAGCCCAGACAGCCCAGAACACACATCTGAGCTCTGCAGCCTGATGACCAGGCACAATAAGTTTGTATCACCTGTGCTCATCCTGGATCTGATCGGTGGTGATGATGATCTGGAGGTACAGGAGATTATGTCCCTGGAGCACCTGCCCAAGAGTGTGATCCAGGATGTAATCTGCATCGCCTGCTGGCTGGTGGAATACAGCTGCAACCAAGAATTTATGAATGTCTACTACAAGATTTGCTCCAGCCAGCTGGACCGCTTCATCAAGGCCTGGAGAAGTATTTCTGGAAGAACAGTTCTTTTTCTGGAATTCCCTACTGCCCTTCTATCCCCAACAAGAGGAAAAAGACACCTGCCAAAAAGCCAGTCAAGTGGCCAGGGATGTCATAAGGCTCAAAACCTTCTGAAAACAGTATTCATTCCAAGCATGGCTTAGTTGCAGAAAAGGGATGCTCTAACCTCCTTCCTTTGGAAGGTCAAGAGAATAATTTCAAAGTTAAGCACCTGTCCGAGGCCTTGAATGACAAGCATAGGCTGCTGGCCAGGAGAGATGGTGGACATGAAGACTGATGCCTACGTTCACTGTGTCAGTACCTTTGTCAAGCTGACCTAGAGTGAGTGTCAGTTGCTGGCTGACATCATCGCTGAGCACCATCAGGAGAAGACCTTTGACTCTGATACAGGATGTGCTGGATGGGCTGATACCTGAAGGGGAGAGTATTGTCTCCTGCTCAGAGGCCATCATTTGACACAACTTTTCCATGGTGCTTACTGTCTTCTCCATCCCGCAGGGCCTAAGCACAGCAAGCCTGAGTTTGACCAGGTGCTCTAGGGCATGGCCGCCATCAGCAAGAACAAATCACCTGGCCTCATCATCTCCCTAGAGTCTATTGGAGCCAAAGCACTGGAGGACTTTGTGGATAACATCAAAAATGACCTCGACAATGAATGCAACATGCCCAAGAATGGCACCATGCTCACAAGCAACGTCATCCTCTTCCTGCAGCAGCTTCTGGACTTCCAGGAGATGGTGGGTAACATGCTGGCTTCCCAGGAGGCCAGTTCTTCAGCCACAGCCATGGTTCCAAGTTCAGCAAGTGACTGCTAAGCATCTATATCTGTAAAATTCTGGGCAGCCTGCAGTTGAACTTGCTGAGCAAGTCCAAGGTATATGAGGACCCAACTCTGAGCACCATCTTCCTGCATAAAAACTACAACTACATCCTCAAGTTCCTGAAGTCTGAGCTGATCTAGCTGGTGGCTGTGACTCAGCAGACTGCTGAGCACCCCCACTGGGAGCATATTGAGCAGTAGATCCCGACTTACCAGTGCAGCTGGCTAAAGGTGACTGAATATTTCACAGAGAACAATATACTTGTGTTCCAACCAGGAGTCAAACTCTAGAAAAAGGAGCAGCAGATGATCAAGGAGTGTTTCAAGGGCTTCAATGATGGCCTTGAAGAACTGTGCAAGATCCAAAAGGCCTGGGCTATTTCAGACACAGAGAAGAAGGACAGGATTTTCCAGGCCCAAAAAAACATTGTCAAGGAAACCTATGGGGCCTCTCGGCACAAGTTCAGCAGCATGTCCTTCACCAAGAGCCTGGAGAAGTACATA
>NM_001145299.4
GGGACCAAGAGCGGAAGTGGGTGTGACGGGGACGGGGGCCCGGTGGGCCCGCGGAGGAAAGATACTGGGGAGTGGGAGCCGCGGGGTTCAGAGCGATGATTCCCCCACAGGAGGCATCCGCTCGACGGCGGGAGATTGAGGACAAGCTGAAGCAGGAGGAGGAGACTCTGTCCTTCATCCGAGACAGCCTGGAGAAGAGCGACCAGCTCACTAAGAACATGGTGTCTATCTTATCATCCTTTGAGAGCCGCCTTATGAAGCTGGAGAACTCCATCATCCCTGTGCACAAGCAGACGGAGAATCTGCAGCGGCTGCAGGAGAATGTTGAGAAGACGCTGTCCTGCCTGGACCATGTCATCAGCTACTACCATGTGGCCAGTGACACTGAGAAGATCATCAGAGAGGGCCCCACAGGTAGGCTGGAAGAGTACCTGGGAAGCATGGCCAAGATTCAGAAGGCAGTGGAGTATTTCCAGGACAACAGCCCAGACAGCCCGGAACTCAACAAAGTGAAACTGCTCTTTGAGCGCGGGAAGGAGGCCCTGGAGTCCGAATTTCGCAGCCTGATGACGCGGCACAGTAAGGTCGTCTCGCCCGTGCTCATCTTGGATCTGATCAGTGGTGACGATGATCTGGAGGCCCAGGAGGACGTGACCCTGGAGCACCTGCCCGAGAGCGTGCTCCAGGATGTCATTCGCATCTCCCGCTGGCTGGTGGAATATGGCCGCAACCAAGATTTCATGAACGTCTACTACCAGATACGCTCCAGCCAGCTGGACCGCTCCATCAAAGGACTGAAGGAGCATTTCCATAAGAGCAGTTCTTCCTCTGGGGTTCCCTACTCCCCTGCTATCCCCAACAAGAGGAAAGACACACCTACCAAGAAGCCAGTCAAGCGGCCAGGGACGATCCGTAAGGCTCAGAACCTTCTGAAACAGTATTCCCAGCATGGTCTAGATGGGAAAAAGGGGGGCTCTAACCTCATTCCTCTGGAAGGTCACGAGCATGATTTCCGAGTTAAGCACCTGTCCGAGGCCTTGAACGACAAGCACGGGCCGCTGGCCGGGAGAGATGACATGCTGGACGTGGAGACCGATGCCTACATCCACTGCGTCAGTGCCTTCGTCAAGCTGGCGCAGAGCGAGTACCAGCTGCTGGCCGACATCATCCCCGAGCACCACCAGAAGAAGACCTTCGACTCCCTGATACAGGATGCCCTGGATGGGCTGATGCTTGAAGGGGAGAACATCGTGTCTGCTGCCCGGAAGGCCATTGTGCGACACGACTTCTCCACGGTGCTCACCGTCTTCCCCATCCTGCGACACCTCAAGCAGACCAAGCCTGAGTTTGACCAGGTGCTCCAGGGCACGGCTGCCAGCACAAAGAACAAGCTGCCTGGCCTCATCACATCCATGGAGACCATCGGTGCCAAAGCGCTGGAGGACTTCGCAGACAACATCAAGAATGACCCGGACAAGGAGTACAACATGCCGAAGGACGGCACCGTACACGAGCTCACCAGCAATGCCATCCTCTTCCTGCAGCAGCTTTTGGACTTCCAGGAGACGGCAGGCGCCATGCTGGCCTCCCAAGAGACCAGCTCTTCGGCCACCAGCTACAGCTCTGAGTTCAGCAAGCGGCTGCTAAGCACCTATATCTGTAAAGTGCTGGGCAACCTGCAGTTGAACTTGCTGAGCAAGTCCAAGGTGTACGAGGACCCAGCTCTGAGCGCCATCTTCCTGCACAACAACTACAATTACATCCTCAAGTCCCTGGAGAAGTCTGAACTGATCCAGCTGGTGGCAGTGACACAGAAGACTGCTGAGCGCTCCTACCGGGAGCACATTGAGCAGCAGATCCAGACCTACCAGCGCAGCTGGTTAAAGGTGACTGATTACATCGCAGAGAAGAATCTACCTGTGTTCCAGCCGGGAGTCAAGCTCCGGGACAAGGAGCGGCAGATTATCAAGGAGCGTTTTAAGGGCTTCAATGATGGCCTCGAAGAACTGTGCAAAATCCAGAAGGCCTGGGCTATTCCAGACACAGAGCAGAGGGACAGGATTCGCCAGGCCCAGAAGACCATTGTCAAGGAGACCTACGGGGCCTTTCTACAGAAGTTTGGCAGCGTGCCCTTCACCAAGAACCCGGAGAAGTACATCAAGTACGGGGTGGAGCAGGTGGGCGACATGATCGATCGCCTTTTCGACACCTCTGCCTGAGCCTGCTGCTAGCCCTGCCTGGTTCCACCAGACTGGCGTGTCATTGGACAGATAAACCAGTGTTAGCTTGCCTCTGGGCTGGGTGAGCTTGAAGTCCTCTGGGACAGAGACCTGTCTCCACGCCTCCGGGAGCTGTGTCCCTGAGCCCCCTAGTCCTGGCTCCTGCTTTTTCCCCACAGCCCGTGTTCCCAGCCGAACCAGCACTCTCCCGGAAGCCTGGGGTCCCTCCACACCTTGGCTTTTATGACCCTGATGGCTTCTGAAACAGGAAAAGAGAGAAGGAAGACAGAGGCCTGTGCCCACTGCTGCTCCATGTGTACCAAGAGCAGCAGGGCAGAAGGGCCCTCCCTCCAGCCTAGGTCAGAGGTGGGGACAGAGAACTCCCCTACAGCCCAGAGATGTGGCAGGGCTCAGAGAAGCAGCCAGAGCTCCTGGAGGAAAGGCAGTCGGGACTGACCCCCTCTCTTAAAACACATTCCCGCCCGCCCACAGGCCTGAGGTCTGGGACCTTTCCCTCCCAGGAGTCCCCTAGGTGGCTGGGGGAGGCAGGCTCACTGGCCATTTTCCCTAGAGTCCAGCACACTGCAGGAGGCGTTCGGAGGAGGAGTTCCGCCCCACCCTCTACAGCCTTCCTCAGGCCCCTGTCTCTGGCCCCCAGCCTCAGTGCCTCTTGGCCCAGGGCCAGGCAGTCGTGGTTGCAGAAGGAGCAATTAGGCTGCCTGCCTGTGGGCTGGGAGACAGGGACAATGGGGAAAAGTTAAGGAGCAAAATGGGGGTTGGAAGCAAAAAATAGGGCCCCACCTATTTAGGACGAGATTGAAGACTGACCCTTGAGGCACACTTGCACTGGAGATGGGTTTATTTCACGCTCTGTGCTTGTGTGCTAGCGGAGGGAGAGCTCAGGGTGGCTTAATCCAGAGGCCCTGTCATGGCCCGCCCCCAGCCATGGGAAAGCAAACTTCATCCTAAGGTGTGCAGCCCAGGCCCTGCCCCTTTACAGTCTAGGCCGCCTGCCATGGGGTGCAGCCTCTCCAGGGGCTGCGTCAGACTTGCACGCTGCCCACATCCAGATTCCTGCAAAGACGAATTGGGTGCACAGCACCCCAACCACATACACGAGGAAGAAGATGCGGTCAGCAGTCTCAGGCCAGCTTCTCTGTGACCCCTTTACTCCTCTGGAGGGCTCTGTGGGGAGAGATACAGGGAAAGGAGCTGTTCTTCAAGGTCCCCTCAACATGAGCGGAAGAGCGAACCCCAGGGGTCATCAGCCTGTATCGCTTCCTTTCTTAGATTCTCAGCTGATGAAAATTTGGGTCTGGCCCATTTCAGGCCATCTTCAGTTGAAGAAACACCCTCTTAGGCTGTGCAAGGCATGGGTTATCAGGGGATTGAGGTCACCTGGGACTTCAGGGAGGCTCAGCTTGCTCCCTGCCCCAGACCTGTTTCTTCTAAGGGAGGAGGACATGGTGGAGACCAGGGACAGGAGAGCCAGCAGGGTGGATGCAAGGGGCCTCTACCCACACCTGGACCTCCGTGCCCTCACCCCAGCCCTAGGTGTGCACCTAGGCCTCATTCCTTACCCCCCAGCCCCTGCCCACCTTCAGCAGGATGAGGCCCTGGGTTGCCGTGCTCTCGCTGTTCCCCTCTCGGGGCTGGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAGCAGCCCAGCCAGCAGCACAGTCTCTATGGTGCTGAGGAAGAGCAGCAGCAGCAGGATGGTGAAGTAGTAAACTGGGGGAGGCAGGGCACAGGGAGATGCTCAGGGGCCAGTCCCTGTGTCTCTGGTGCCCAGCGAGCTGAGCACCAGTGGGTGACCGGGGAGAAACAGGGCAGACTGGGTAAGGGAGCAGGGCTTACTGAGCAGTGGGTTGCAGGAGGAGGAGCTGGGCAGGGCCTGCACCAGGGAGGAGTGGAGGACGAGGTAACTCAGCAGCAATGTCACCTTGTAGCCTATGCGCTCAATGGCCCGGAGGGGCAGCAACCCCCCGCACACGTCAGCCAACAGCAGTGCCTCTGCAGGCACCAAGAGAGCGATGATGGACTTGAGCGCCGTGTTCTTCAGCCTCAGCTGGAAGGGGAAAAGTCAGGGCCTTCCCGGCGGGGGGGAAGGAGGTGGGCATCGGGGGCATGGGGCCTGGCCTCTGGCCGTGCATCCTCACTCCCACCCGCCTCCAGCAGCCCTCTGTCGGCCTCCTCCCGACTTGACTCACCGTCACCTGGAAGCAGGGCACCAGCTGCTGGGGTGGGACTTGGGTCTTCAGATCATAAACTACGTATTCCCTCTTGACACTCACAATCTCGTTCACCACGTGGGCCTGGAACTCTAACTCCATCGCTGAGGGGTGGGAATGAGAACTATGAACCAGGAAGGAGAGATCCCAGCTGCCAAGTCTGGGGGTAGCAGACTGGAGCCCAGGGGTGATGGAGACTTTTGATGGCTTTTGGCAGGGACAGACTTGGACACAAAACCGATCCATAGAAGGGCTTCCCAAACCTTGTTTTGCAACATCCCAAATTGTCTCCAGTTGAAGGAAGGCCTTTATCAGATTCATAGATGAGCTTTCATTGTAAAAATAAATGTACTTTGCACCACTTCA

Publications

PMID - Link Title