Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name FKBP4P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:118192726-118194895  UCSC
Coordinates (T2T) chr4:121497696-121499865  UCSC
Coordinates (hg19) chr4:119113881-119116050  UCSC
Strand -
Parental Sequence NM_002014.4
Parental seq. overlap 1980 bp
Parental seq. overlap (%) 53.2%
Genomic Region Intragenic (NDST3)
Retrocopy Summary FKBP4P1, located on chr4:118192726-118194895, is a retrocopy of the parental gene FKBP4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FKBP4
Full Name FKBP prolyl isomerase 4
Also known as FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52
Coordinate chr12:2794970-2805423
Strand +
Gene summary The protein encoded by this gene is a member of the immunophilin protein family, which play a role in immunoregulation and basic cellular processes involving protein folding and trafficking. This encoded protein is a cis-trans prolyl isomerase that binds to the immunosuppressants FK506 and rapamycin. It has high structural and functional similarity to FK506-binding protein 1A (FKBP1A), but unlike FKBP1A, this protein does not have immunosuppressant activity when complexed with FK506. It interacts with interferon regulatory factor-4 and plays an important role in immunoregulatory gene expression in B and T lymphocytes. This encoded protein is known to associate with phytanoyl-CoA alpha-hydroxylase. It can also associate with two heat shock proteins (hsp90 and hsp70) and thus may play a role in the intracellular trafficking of hetero-oligomeric forms of the steroid hormone receptors. This protein correlates strongly with adeno-associated virus type 2 vectors (AAV) resulting in a significant increase in AAV-mediated transgene expression in human cell lines. Thus this encoded protein is thought to have important implications for the optimal use of AAV vectors in human gene therapy. The human genome contains several non-transcribed pseudogenes similar to this gene. [provided by RefSeq, Sep 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FKBP4P1
Bonobo Pan paniscus FKBP4P1
Gorilla Gorilla gorilla FKBP4P2
Orangutan Pongo abelii FKBP4P1
Green monkey Chlorocebus sabaeus FKBP4P1
Crab-eating macaque Macaca fascicularis FKBP4P1
Rhesus Macaca mulatta FKBP4P1
Baboon Papio anubis FKBP4P1
Golden snub-nosed monkey Rhinopithecus roxellana FKBP4P1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FKBP4P1
GCAGAGGTGCTCCAGCCTCCATGTGGTCCGCAGTCAGCACCACAGCACCTGGCCTCCTGCACACCCTGAAGGTAGCACCCCTGCCTTTGGCTCAGAGTATGCTGGTGCCGGTGCCAGCTCCCAGAAAGGGTGCGCTGCGTGGAGATGACAGTTGAGGAGATGAAGGAGACTGAGAATGGGACACAGTTGGCGCCTCTTCCCATGGAGGGAGTGGACATTCGCCCAAACAGGAGGAAGGCATGCTGAAGGTCATCGAGAGAGGGCACAGGTACAGAGATGCCCATGATTGGGGACTGAATCTTTGTCCACTACACTGGCTGGCTGTTAGATGGCACAAACTTTGACCCCAGTCTGGATCACAAGGACAAATTCTCCTTTGACCTGGGAAAAGGGGAGGTCAACAAGGCTTGGGACATTGCCATAGCAGCCATGAAGGCAGGGGAGGTGTGCCATATCACCTGCAAACCAGAATATGCCTTCGGTGCAGCAGGCAGTCCTCCAAAGATCTCCCCAATGCCACACTCGTGTTTGAGGTGGAGTTGTTTGAGTTTAAGGGAGAAGATCTGACGGAAGAAGAAGATGGCGGAATCATCTACAGAATTACAGACTTGCGGTGAAGGCTATCCCAGGCCCAATGAGGGTGCTATCATGGAGATTGCACTGGAAGGGTGCTACAAGGACTAGTTCTTTGAACATCAGGAGAATCTGGATCTGCCTTATGGTCTGGAGAGGGCCATTCAGTGCATGTAGAAAGGAGAACATTCCATTGTGTACCTCAAACCCAGCTATGCTTTTGGCAGTGTTAGGAAGGAAAAGTTCCAAATCCCACCAAATGCCTAGCTGAAATATGAATTACACCTCAAGAGTTTTGAAAAGACCAAGGAGTCTTGGGAGATGAATTCAGAAGAGAAGCTGGAGCAGAGCACCACAGTGAAAGAGTGGGACACTGTGTACTTCAAGGAAGGCAAATACAAGCAAGCTTTACTATAATATAAGAGGATTGTGTCCTGGGTAGAATATGAGTCTAGTTTTTCCAATGAGGAAACACAGAAGGCACAGGCCCTTCAACTGGCCTCTTACCTCAACCTGGCCATGTGTCATCTGAAACTACAGGCCTTCTCTGCTGCCACTGAAAGCTGTAACAAGGCCCTGGAACTGGGCAGCAACAACGAGAAGGGCCTCTTCCATTGGGGAGAGGCCCACCTGGCTGTGAATGACTTTGAACTGGCACAGGCTGACTTCCAGAAGGTCTTGCAGCTCTACCCCAACAACGAAGCCGCCAAGGCCCAGCTGGCTGTGTGCCAGCAGCAGATCTGCAGGCAGCTTGCCTGGGAGAAGACGCTCTACGCCAACACGTTTGAGAGGCTGGCTGAGGAAGAGAACAAGGCCAAGGCAGAGGCTTCCTCAGGAGACAATCTCACTGACACAGAGATGGAGGAGCAGAAGAGCAACACCACAGAGAGCCAGTCTCAAGTGGAGACAGAAGCATAGCCCCTCTCCACCAGCCCTACTCCTGTGGCTGCCTGCCCCCCGTCTCCCTACTCTGCCCTGTTAGTTTTGTAAAAACTGAAGAATTTTGAGTGAATTAGACCTTTATTTTTCTATCTGGTTGGATGGTGGCTTTAGGGGGAAGGGGGAAAGGAGTAGGCTGGGAGATTGAGGTGGGGAATCATTTTAGGTGGTGTCACCCCCTCTTCCCTTCCCCCATTGCACATGAACATATGTCCATCCATACATGCTCATTAGAGTGTTAATTTATTTTGCTCCTTCTGTTTGTTAGGTCCATTTTCCAGGGGTAGAAGAGGCAAGTGGTAGGGATGGGGTCTGATATGAACCCAGGGTGGAGAAGGAGACTCCTGGGCAGCTGTTTTCCTCATCCTTTCCCTCTCCCAGTCCATTTCCAAATGTGGCCTCCATGTGGGTGTTAGGGACATGGGAAGAAACACCATTTCTTCTCTGTTCCCTTCCTCACCCCAGATGGCATGGCTGATGCTGTCTCCTGGTGTCATGGTGACCACCCCCTGTCCCCCGTTCTGGTATTTCCCCTGTCAGTTTTCCCTCTCAGCCAGGTTGTGTCCCCAAACCCCCTCAGCCTCTTCTTTGCATGTTGATGAAGGTCCAGGCTTGCCTGAAGTTCCATGCTAGAGCAATAAAGTGGa
>NM_002014.4
CCTACCCCAGCTCTCGCGCCGCGTGCAGAGGTGCTCAAGCCTCCTCGCGGTCCGCAGTCAGTGCCGccgcgcccggcctcccgcacgccccgcaggtagcgcccccgcccgcggcccagagtgcgctcgcgccggcaccagctcccgGATAAACGGCGCGCCGCGCGGAGATGACAGCCGAGGAGATGAAGGCGACCGAGAGCGGGGCGCAGTCGGCGCCGCTGCCCATGGAGGGAGTGGACATCAGCCCCAAACAGGACGAAGGCGTGCTGAAGGTCATCAAGAGAGAGGGCACAGGTACAGAGATGCCCATGATTGGGGACCGAGTCTTTGTCCACTACACTGGCTGGCTATTAGATGGCACAAAGTTTGACTCCAGTCTGGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGGGAGGTCATCAAGGCTTGGGACATTGCCATAGCCACCATGAAGGTGGGGGAGGTGTGCCACATCACCTGCAAACCAGAATATGCCTACGGTTCAGCAGGCAGTCCTCCAAAGATTCCCCCCAATGCCACGCTTGTATTTGAGGTGGAGTTGTTTGAGTTTAAGGGAGAAGATCTGACGGAAGAGGAAGATGGCGGAATCATTCGCAGAATACAGACTCGCGGTGAAGGCTATGCTAAGCCCAATGAGGGTGCTATCGTGGAGGTTGCACTGGAAGGGTACTACAAGGACAAGCTCTTTGACCAGCGGGAGCTCCGCTTTGAGATTGGCGAGGGGGAGAACCTGGATCTGCCTTATGGTCTGGAGAGGGCCATTCAGCGCATGGAGAAAGGAGAACATTCCATCGTGTACCTCAAGCCCAGCTATGCTTTTGGCAGTGTTGGGAAGGAAAAGTTCCAAATCCCACCAAATGCTGAGCTGAAATATGAATTACACCTCAAGAGTTTTGAAAAGGCCAAGGAGTCTTGGGAGATGAATTCAGAAGAGAAGCTGGAACAGAGCACCATAGTGAAAGAGCGGGGCACTGTGTACTTCAAGGAAGGTAAATACAAGCAAGCTTTACTACAGTATAAGAAGATCGTGTCTTGGCTGGAATATGAGTCTAGTTTTTCCAATGAGGAAGCACAGAAAGCACAGGCCCTTCGACTGGCCTCTCACCTCAACCTGGCCATGTGTCATCTGAAACTACAGGCCTTCTCTGCTGCCATTGAAAGCTGTAACAAGGCCCTAGAACTGGACAGCAACAACGAGAAGGGCCTCTTCCGCCGGGGAGAGGCCCACCTGGCCGTGAATGACTTTGAACTGGCACGGGCTGATTTCCAGAAGGTCCTGCAGCTCTACCCCAACAACAAAGCCGCCAAGACCCAGCTGGCTGTGTGCCAGCAGCGGATCCGAAGGCAGCTTGCCCGGGAGAAGAAGCTCTATGCCAATATGTTTGAGAGGCTGGCTGAGGAGGAGAACAAGGCCAAGGCAGAGGCTTCCTCAGGAGACCATCCCACTGACACAGAGATGAAGGAGGAGCAGAAGAGCAACACGGCAGGGAGCCAGTCTCAGGTGGAGACAGAAGCATAGCCCCTCTCCACCAGCCCTACTCCTGCGGCTGCCTGCCCCCCAGTCTCCCCACTCCACCCTGTTAGTTTTGTAAAAACTGAAGAATTTTGAGTGAATTAGACCTTTATTTTTCTATCTGGTTGGATGGTGGCTTTAGGGGAAGGGGGAAAGGTGTAGGCTGGGGGATTGAGGTGGGGAATCATTTTAGCTGGTGTCAGCCCCTCTTCCCTTCCTCCATTGCACATGAACATATGTCCATCCATATATATTCATCAGAATGTTAATTTATTTTGCTCCCTCTGTTAGGTCCATTTTCTAAGGGTAGAAGAGGCAAGTGGTAGGGATGAGGTCTGATAAGAACCCAGGGTGGAGAGGGAGACTCCTGGGCAGCCGTTTTCCTCATCCTTTCCCTCTCCCAGTCCATTTCCAAATGTGGCCTCCATGTGGGTGCTAGGGACATGGGAAAAACCACTGCTATGCCATTTCTTCTCTCTGTTCCCTTCCTCACCCCCGACGGTGTGGCTGATGATGTCTTCTGGTGTCATGGTGACCACCCCCTGTTCCCTGTTCTGGTATTTCCCCTGTCAGTTTCCCCTCTCGGCCAGGTTGTGTCCCAAAATCCCCTCAGCCTCTTCTCTGCACGTTGCTGAAGGTCCAGGCTTGCCTCAAGTTCCATGCTTGAGCAATAAAGTGGAAACAATAAAACCTGGGTGTCAGACAACCCTTTCTGTTCAGCCTTGGAGTGGTGGGTATGGGTGGGTACATAATGGGTAGTAGCACAATCAAGGGGTCACCCACTTAGTTCCAGTTGAGCTTAAATAAGTGAGCATCTCATGTAGATGCCATAGTTGGGCAGGAAGCAGCCCCACCATGCATGGCTTCCTGAGCACTGCACAGGCTGCCGCTGGGATTTGTGTCTATGGCTTCGCCCAAGGTTCCCAGCACTCCCTCCCTCCAGCAACCTGGCAGTTTTAGTGCCTCTGGTTTTCTTCCCTGACACTTAGGAAGACGAAAGTATAAAGATCTAGAAGACTGGGACACCATGCATGTTCATTTTGAAGTTGGAATTGGTCTTCTGCCTACCTCTGATCTGGCAGAGGTATCTGCATTTTGGTTTGTTAACAAGGTAAAACTCCTGGTGTCACTGACCTCCTCCTGTCAGATAACTTACATGATTAAGGTTAAGAGTAAAGCAGAGTGTTCACGTCCAGCTTCCTTCTCAGCCTTAACAGGAAAAGGCTTGTGCTTTTTTTCTAACTATGCTTTGACCCTTAACTCCTATGGCATGATGGGGCCCTGGGAGAAGCCAGGCAGCACAAGCCAGTCATGCTGAGCTGCCTCCAGATAATCCTGGCTCCAGGCCAGAGCCCGTGTCTGCCCTCATCCCTCTCTCCTACTGTGAGCTCTCCAGTCCTTTCCCAACAGCGATGTGGTTGTCTGCTTAGCCACATGCCTGTATAGTTCCTTCCAGAAGAAATGTATAATGGTGGAAGATGTATTTCTGTGTGAAAATTTTCACCAAGTCATACAACACAGCTGATGCTGGAGCCAGGATTAAAATTGGGGTGTACAAGTCTCCCAGTGTgagtatcccttgagcccaagacaccaaggatgcagagaactgtgactgtgccactgcacgccagcctgggcaagagagtgagaccatctcttttttaaaaaaGTCCCTGTGTAACTGCTTTCTTACTGGGCTTACCTCACATCACAGCCCTGTGTTTGTGGTTTGTGTCTGGGTCCTCTTGGTATTTCAAAAGTAGTAGATTCTTACGCCTGCAGCCAACAATAATCACTAACtcaagcatttatggagtaagcctagcactgtactgacagcatcacatgagtgaaactgaatccttgcaaccatcctacaaagaaggtataactttaataaccctatttacagataagaaaaccaagactcagaagttaaatgGAAAGGTGAGGTCTCTGAACTAATCCAGACTCTCCCATGAGGTTcctttggcaagtcctgggcttctgtcctcatctgcaaaatcgaaagcattcctgaggtttcttccagctctgcatcctgtaggattccaagaATGTAAAACTGCATGTAACCGTGGAACATCTAGAGATAAGTCTTAGTTTATGTAACATTAAAACTGTCTAGTGAGGATGTTTTGTTAAAA

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