Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name UQCRQP1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:134944227-134944628  UCSC
Coordinates (T2T) chr4:138267034-138267435  UCSC
Coordinates (hg19) chr4:135865382-135865783  UCSC
Strand +
Parental Sequence NM_014402.5
Parental seq. overlap 355 bp
Parental seq. overlap (%) 22.6%
Genomic Region Intergenic
Retrocopy Summary UQCRQP1, located on chr4:134944227-134944628, is a retrocopy of the parental gene UQCRQ. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UQCRQ
Full Name ubiquinol-cytochrome c reductase complex III subunit VII
Also known as MC3DN4|QCR8|QP-C|QPC|UQCR7
Coordinate chr5:132866642-132868847
Strand +
Gene summary This gene encodes a ubiquinone-binding protein of low molecular mass. This protein is a small core-associated protein and a subunit of ubiquinol-cytochrome c reductase complex III, which is part of the mitochondrial respiratory chain. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC107974864P1
Bonobo Pan paniscus LOC100987427P1
Gorilla Gorilla gorilla LOC101144095P1
Gibbon Nomascus leucogenys LOC100601353P1
Green monkey Chlorocebus sabaeus LOC103244527P1
Crab-eating macaque Macaca fascicularis LOC102133057P1
Rhesus Macaca mulatta UQCRQP1
Baboon Papio anubis LOC101017841P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659826P1
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UQCRQP1
GCCGGATCGGTGACTGCGGAGGGCTAGGTGACCCCGGCCGCCGCCATGATGGGCAGCGAGTTTGGGAATCGGACGTAGATGCAACATGTGATCTCCTACAGCTTGTCACCTTTTGAGCAGCGTGCCTCCCCGTACTACTTCCGTAAAGGAATCCCCAACGTGCTGCGCCGCACTCGGCAGTCTTTCCTTCGCGTAATGCCGCCGTTTGTAGTGTTTTATCTTATCTATACATGGGGGACTCAAGAGTTTGAGAGATCCAAGGGGAAGAATCCAGCTGCCCATGAAAATGACAAATGAGCAACACATCCGGATGATGGTTCCCTGTCCCTGGAAGAGCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTTAACGACACAATAAACTTCCTATGTTCTGC
>NM_014402.5
GAACGAGTCAACCGGATCGGTGACTGTGGAGGGCGAGCTGAGCCCTGGCCGCCGCCACAATGGGCCGCGAGTTTGGGAATCTGACGCGGATGCGGCATGTGATCAGCTACAGCTTGTCACCGTTCGAGCAGCGCGCCTATCCGCACGTCTTCACTAAAGGAATCCCCAATGTTCTGCGCCGCATTCGGGAGTCTTTCTTTCGCGTGGTGCCGCAGTTTGTAGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTTGTGAGTAGAATCCTGTGTGACCACTAATATTCAAGTTCATGAAGCGCCCCTCCTCAGCATGAGTCTTGAAGTTTTGCCTGGTCTCGGGTTTTGGTGAAAGAGCAGGGCTCCCCCTTTGTTCCATTATCTACAAGAAAGTAGCTGCAGGTACTCCTGCATCTAACCATTTGTGGGTGACATGGGCTATGGCGAGTGCTGGTTCTTGGCCCTCTGCTCCCATAGCAACAATAAAGTCTACTAACTATATTGTAATTAGTATGTGTCAGGGACGCttttattttttattttttgagatggagtcttgctctctcacccaggctggagtgcagtggtgtgatctcggctcactgccatctgtgcctcctgggttcaaacgattctcctgtctcagcctccgagtagctgggattacaggtgcaggacaccacacctggctaattttttgtatttttagtagagacaggtttcaccatgttggccaggctggtctggaactcctgacctcagatgatctgtgcgcctcagcctcccaaagtgctgggattacaggcgtaagccatggtgctctgggccTcaaatactcttcttagctacacaaatgaactgttaaacctcacaagcacctttaacgtatcctcatttggcagatgaggaaatgggcacagagagattaagtaatttgccagaaattatacagcagtgaatggtggagtcttgcactaaaGTGATGCTCTTAAAACTATGCTCTATTGcaggggtgtccaatcttttagcttccctgggccacacataaaatacgctaacattacaatagctgataagctttaaaaaatggcaaaaaaaaccctcagcgttttagaaagtttacaaatttttgttgggtcggattcaaagccatcctgggctgcttgctgcccaggactgcggttggacaagcttgCTCTACTGCCTTTCCTCCTAAGGCAGGCCTTAGCCTGAGGGGATATCAGCTATAAAACGGATGAGGTGATCTCTTAGCCTCCACAGCAGTTTTCTGTTTCTGTGCCAGGAGGCCAACAATGTTTTCAaccatatgtggttcataaagcctcaaagatttactctggccctttatgaataaagtttacccctgATCTAAA

Publications

PMID - Link Title