Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARMC1P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:138477232-138482288  UCSC
Coordinates (T2T) chr4:141800939-141805995  UCSC
Coordinates (hg19) chr4:139398386-139403442  UCSC
Strand -
Parental Sequence NM_018120.6
Parental seq. overlap 1522 bp
Parental seq. overlap (%) 34.9%
Genomic Region Intergenic
Retrocopy Summary ARMC1P1, located on chr4:138477232-138482288, is a retrocopy of the parental gene ARMC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARMC1
Full Name armadillo repeat containing 1
Also known as Arcp
Coordinate chr8:65602458-65634194
Strand -
Gene summary Predicted to enable metal ion binding activity. Involved in intracellular distribution of mitochondria. Located in cytosol and mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ARMC1P1
Bonobo Pan paniscus ARMC1P1
Gorilla Gorilla gorilla ARMC1P1
Orangutan Pongo abelii ARMC1P1
Gibbon Nomascus leucogenys ARMC1P1
Green monkey Chlorocebus sabaeus ARMC1P1
Crab-eating macaque Macaca fascicularis ARMC1P1
Rhesus Macaca mulatta ARMC1P1
Baboon Papio anubis ARMC1P1
Golden snub-nosed monkey Rhinopithecus roxellana ARMC1P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARMC1P1
CAAACAGATATGTACAGCTTTACATTTTATTTTACATGAAGTGCGTCATTAGGAAAACTCGTTCTCTCCTCAAGCCTCAGGACCTACCTGAAGAGAAGTTTTCTTGTAGCTCAATTTGTGCATCAATTACCGAATATTTTACTCTATGAAAGATACATGTTTTACTGTGAAAGGTACATGCTTTTGTACTCTTCACTGAAAGCTGAAAACATTTCTTGTTACCCTCTTTTGTGCCTTCTTATTTTGCCAACCATGTTTATAGAAAGGACATTACTAATGACATTTTGCAAATTAAAAACATTCATTTGAACATAGTAGTCCCCTAGAAAAAGAACTCTACAAAAATTTTGCAGGCTTATTCATTATAATTTTAATAAAATTAACACAAAATCTGTCAAGAAGGAGGAAACATGTATGTTAGCAAAGTGTTTTTGGAGACTATTCGAATGTGACCAAATGTGGTTCTAGTTGACTTCTTTTCACTTTGGTTTATATCAGCTCTTGAGAGTTAAGTCTGACCATGATATTGCAAACAACTGTAAATGGTCTCTAGGCCTTACTTTGTGATTATACATTATCTCCTGCTAGAAAAAAATAATGGTATAAAGAACTGACATACTGAAAAAAACAAAAATCAAATGCCTATAATACCATAACGCCATTTTGGTATAGAGTCTAACTTTAAAACATGAATTGCTTGACAGAAGCCTATTCAGTAGATGTTTCTTTGTATTGCCTTTTGTGAATTTATTATGAAAATGCTGCAGTTGTATTGAATGAAAAAGACCCAAATTATTGCTTATGAAGAAATAAAGCCAGCATTGATCACTTAATCCTGTTTTTTATGACTAGCCAGAAAAAAAGAACTTCAGTGAAGTTAAGATAAATAAATACATATACATATAATTTTTTTGGCAGATAAGTGCTAATTACATATATGTGATGCCTTATTAAATTTCTGAAATATTTGGTAACTAAAATTTTCCTTTTGGAAATTAATTAAATCCAGATATATGTTAATATGGTATGACTAAAAACAAATAGGAAGAAATTGAAATTCCTTTTCATCCACATGTAGAGCTACTATTTTACTATTTGGAGAATGTGATGTGAAAATTGGACCCTAAAGGGTTTTCTTGTGTTTTCATTGTAAAATACCATCACCAGTGAGAGCCTTGAGTTCACTAACATTGTGACCTTCTGGAGGGAGAGTTACTGGGGGTTATTGAGGATGATATTTTTTTCATGTGTCTTGTTTCTGATTCAAGTGACATGCACAAACTGAAAAAAAAAACTTTCAGGGCACCTATTGCTCTAAATGCATAATATAACTTGCTGCCAGAACCAGATGTGTTGAAAAAAAGAAAATAAAACCACCTTCTTTCTATAGCCACTAAAGCAAAGTTTGCTGTTGTAACGAATTTGTATTTTATTTTTCATTGCCACACATCTGCTTATTTAAAAACTATATCCCTTTGGTAGTAATTGTTCAGGACAAGTAGGTATTACAACTTGATGTTTGTGTGTTCTAATTCTAAGTGTTCTTTTATTCCAGATCATATAGAGCAGTAAAGGCAACTGTAACAGCATTTTTTGAAATACATATTTTGAAACTGTAAAATAATAAAAGGTAACATAATTAAAATTGAGTGGATATTAAAGCGCCTTGCTCTTTGGCTCCCTGAGTTAGTCCAGTTGTTTGCGATCGCCGACGCTGTGGCTGTGAACCGAGGGGCTCACGCCGCCTGGGTTTCTACCTCATCCGTAGGTGTGGCCCGATGGTGCAGCAGGCTCTGAACTCCTAAAGCTCTGGAGCAAATTTAAAATTTTATTCATGTGCATGGCATAGAAGATGAATTCTTCCACCTCCACCATGAATGAAGAGTCTGATACTCTATCGGTAGTTAACCAGTTAGGGGATATAGCAGCAGATCCATTAAACAGAAGAGCTGTAGTCCAGGATCAGGGATGTCTGCCTTGCCTTATTTTATTTATGGACCACCCCAACCCTCCAGTCCATTTGGCTTTGCTCGCTCTTTGATACTTGGGAGAACACCGTGCAAACAGAGAAAAGATGAAAGGAGAACTGGGTATGATGTTGAGCCTACAAAATGTTATACAGAAAACTGCAACTCTGGGAGAAACAAAACTTCTGGCCTCTGAAATCTATGACATACTTCAGTCCTCCAATAAGGCAGATGGTGATAGTTTCAATGAAATGAATTCATATTGAAGGAAAGCTCAGTTTTTTCTGGGAACTGCAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGACGGCCTTGATGATACGTCTTCGAGAAATCTATATGAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCTGTTCAAAGGCTTGGTGTGAATCCGTTCAGATTTGAAAGCTGAGGCTTTCGCATCAGCGAGAGCATCAACCAAGGTTATGAAAGCTCCGTAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGCTGGTCCCATTCCAAGACCTTCCTGTGGTAGAACAGAACACAGAGCTACCTGACTACCTGTCTGAAGATGAGAGTCCCACAAATGAACAGTACAAGGTGGTGTCCTGGGTCTTCAGCTCACACCCAGTGGGTGGAACTAGCTGGCTGAGCACAGCTGCAAACTTTTTATCCAGATCGTTTTATTGGTGACTTCAATTTGGGGTTCAAGGACTGTGTGAACCAACCAGGGGCCAGTTTTCCATTGTTGTGGTGAACTGTCAAGTGCAATTTGCAATGGGTTATCATGAAAAGCTTTTAGATTACATGATTGCATATGCTGCATTTTACATTTTATTGGACATTTTACCCCACTGAGTGGTAAAAAGAACAGAGGCTGTGGATGGAGTTGCTTTGTTTATGAAAGTATTTTGTTTTTTCTCTTTCATTTAATTGCCTTATATTTTATAAACCATGGGTCCGCTGTTAAAACCAAACATGGGAGGAGg
>NM_018120.6
AGAGCCTTTGCCCGCCAGCGCCTTCGCTCTTTGGCTCCCTGAGTTAGTCCGGTTGCTTGCGATCGCCGCGGCCGGGGCTGCGAACCGAAGGGCTCGCTCCGCGCCGCCTGGGTCTCTACCTCATCCGTAGGTGTGGCCCTGATGGTGTGGCAGGCTCTGGACTCCTAAAGCTCTGGAGCGAATTTAAGATTTTATTCATGTGCATGGCATAGAAGATGAATTCTTCCACTTCCACCATGAGTGAAGAGCCTGACGCTCTATCGGTAGTTAACCAGTTACGGGATCTAGCAGCAGATCCGTTAAACAGAAGAGCCATCGTCCAGGATCAGGGATGTCTGCCTGGCCTTATTTTATTTATGGACCATCCCAACCCTCCAGTCGTCCACTCCGCTTTGCTTGCTCTTCGATACTTGGCAGAATGCCGTGCAAACAGAGAAAAGATGAAAGGAGAACTGGGTATGATGTTGAGCTTACAAAATGTTATACAGAAAACTACAACTCCAGGAGAAACAAAACTTCTGGCCTCTGAAATCTATGACATTCTTCAGTCCTCCAATATGGCAGATGGTGATAGTTTTAATGAGATGAATTCACGTCGAAGGAAAGCTCAATTTTTTCTGGGAACTACAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGCCTTGATGATACGTCTCGGAGAAATCTATGTGAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCTGTTCAAAGGTGTGTGGTGCGAATCCGTTCAGATTTGAAAGCTGAGGCTTTGGCATCAGCAATAGCATCAACCAAGGTTATGAAAGCTCAGCAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGTTGGTCCCATTCCAAGATACTCCTGTGGAAGTTGAACAGAACACAGAGCTACCTGACTACCTGCCTGAGGATGAGAGTCCCACAAAGGAACAGGACAAAGCGGTGTCCCGGGTCGGCTCACACCCAGAAGGTGGAGCTAGCTGGCTTAGCACAGCTGCAAACTTTTTATCCAGATCATTTTATTGGTGACTTCACTTTTGGGCTCAAGGACTGTGTGAACCAACAAGGGGCCAGTTTTCCATTGTTGTGGTGAACTGTCAAGTGCAATTTGCAATAAGTTATCATGAAAAGTTTTTAGATTACACGATCGCATATGCTGCATTTCACGTTTTATTGGACATTTTACCCCACTGAGTGGTAAAAAGGACAGAGGCTACAGATGGAGTTGCTTTGTTTATGAAAGTATTTTGGTTTGTTTTCTTTCATTTAATTGCCTCATATTTAAAAACCATGGGTCCACTGTTAAAACCACATGTGTATGTGCAGCTTTACATTTTATTTTACGTGAAGCATGTGATTAGGAAAACTCATTTTCTTTTCAAGCCTCAGGACCTACCTGAAGAGAAGTTTTCTTGTAGCTCAAGTTGTGCATGAATTACTGAATATTTTACTGTGCTTTTCTTCATGAAGGGTACATGCTTTGTACTCTTCACTGAAAGCTGAAAACATTTCTTGTTACCCTCTTTTGTGCCTTTTTATTTTGCCAACCGTGTTTATAGAAAGGACATTACTAATGACATTTTGCAGATTAAAAACATTCATTTGAACACAGTAGTCCCCTAGAAAAACAACTCTACAAAAATTTTGCAGCCTTATTCATTATAATTTTGATAAAATTAACACAAAATCAGTCAAGAAGGAAACATGTATATTAGTGAAGTGTTTTTGGAGACTGTTTGAATGTGACCAAATGTGGTTCTAGTTGACTTCTTTTCACTTTGGCTTATATCAATTCTTGAGAGTTAATGTGATCATGATATTGCAAACAACTATAAATGGTCTCTAGGCCTTACTTTGTGATTATACGTTATCTCCGGCTAGAAAAAAATAATGGTAGTAAAGAAACTGACAAACTGAAAATAAGAAAACAAAAATCAAATGCCTATAATACCATAATGCCAGTTTGGTATAGAGTCCAACTTTAAAACATGAATTGCTCGACAGAGTTCTATTCAGTAGGTGTTTCTTTGTATTGTCTTTTGTGAATTTATTATGAAAATGCTGCGTTGTGTTGAATGAAAAAGACCCAAATTACTGCTTATGAAGAAATAAAGCCAGCATTGATCACTTAATCCTGTTTCTCATGTCCAGCCAGAAAAAAGAACTTCAGTGAAGGTAAGATAAATAAATACATACACATATGTTTTTTTGGTAGATAAGTGCTAATTACATATATGTAATGCTTTATTAAATTTCTGAAATATTTGGTAACTAAAATTTTCTTTTTGGAAATTAATAAATCCAGATACATATTAATGTTGATATGAGTAAAAACAAATAGGAAGAAATTGAAATTTCTTTTCATCAACATGTAGAGCTGCTATTTTACTATTTGGAGAATATGATGTGAAAATTGGACCTCAAAGGGTTTCCTTGTGTTTTCATTGTAAAATACCATCATCAGTGAGAGTCTTGAGTTCACTAACATTGTCACCTTCTGGAGAGAGAGTTAATGGGGGGCATTGAGGATGATATTTTTTTACATGTGTTTGGTTTCTGATTCAAGTGACACGCACAAACTGaaaaaaaaaaaacaaaaaaaGCAACAATAACTTTCAGGGCACCTATTGCTCTAAATGCATAATATAACTTGCTGCCAGAACCAGATGTGTTTAAAAAAGAAAATAAAACCACCTTCTTTCTATAGCCATTAAAGCAAACTTTACTGTTCTAACAAATTTGTATTTTATTTTGCATTGCCACACATCTGCTTATTTAAAAACTACATCCCTTTGGTAGTAATGTTTCAGGACAAGTAGGTATTACAGCTTGATGTTTGTGTGTTCTAATTCTAAGAGTTCTTTATTCCAGATCATATAGAGTAGTTAAGACAACTGTAACAGCATTTTTTGAAATACATTGTAAAATAATAAAAGGTAACATAATTAAAATCGAGTGGATATTA

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