Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MYL12BP2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:184298881-184299743  UCSC
Coordinates (T2T) chr4:187642670-187643532  UCSC
Coordinates (hg19) chr4:185220034-185220896  UCSC
Strand -
Parental Sequence NM_033546.4
Parental seq. overlap 798 bp
Parental seq. overlap (%) 68.4%
Genomic Region Intergenic
Retrocopy Summary MYL12BP2, located on chr4:184298881-184299743, is a retrocopy of the parental gene MYL12B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MYL12B
Full Name myosin light chain 12B
Also known as MLC-B|MRLC2
Coordinate chr18:3262133-3278461
Strand +
Gene summary The activity of nonmuscle myosin II (see MYH9; MIM 160775) is regulated by phosphorylation of a regulatory light chain, such as MRLC2. This phosphorylation results in higher MgATPase activity and the assembly of myosin II filaments (Iwasaki et al., 2001 [PubMed 11942626]).[supplied by OMIM, Mar 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MYL12BP1
Bonobo Pan paniscus LOC100977910P1
Gorilla Gorilla gorilla MYL12BP1
Orangutan Pongo abelii LOC100450310P1
Gibbon Nomascus leucogenys MYL12BP2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MYL12BP2
GCCGCCACTGTCTGGCCACAGCCCCGCGCTCCTCGCTGTCGCTTGTCATCTCGCACAGGGTGGTTCCGTTTCTGGTATTTGGTGCCGGAATTAAGCAACCACCATGTTGAGCAAAAAGGCAAGACCACCAAGAAGCGCCCTCAGTGTGCAACGTCCAAGGTGTTTGCCACGTTTGACCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGTTTCATCAGCAAGGAAGATTTGCATGGTATGCTTGCTTCTCTAGGGAAGAATCCCACTGATGCATGCCTTGATGCCGTGATGAATGAGGCACCAGGGCCCATTAACTTCACCATGTTGCTCGCCATGTTTGGTAAGAAGTTAAATGGCACAGATCCTGAAGACGTCATCAGAAATGCTTTTGCTTGCTTTGATGAAGAAGCAACAGGCACCATTCAGGAAGATTACCTGAGAGAGCTGCTGACAACCGTGGGGGATCAGTTTACGGATGAGGAAGTGGATGAGCTGTACACAGAAGCACCTATTGACAAAAAGGGGAATTTCAATTACATCGAATTCACAAGCATCCTGAAACATGGAGTAAAAGACAAAGATGACTGAAAAGAACTTTAGCTAAAACCTTCCAGTTACATTGTCTTACTCTGTTTTGTTTCTCACACACTTCCACCACCCTCATAGAACCTGTTGCATGCAACTTAGTTTCACAGCTTTGCCTCTTTTTTTTTATGTATTTATTCCAGAACTTTCTGCCACTTAGCACTTGTATAATCAGACGGGAAATGAGGATGAGGGCATAAATTGTATTGAAAAAGAGATCGCCAATAAAAATCAACAAATGTGAAAGCCCC
>NM_033546.4
AGGCAGGAAGTGTCGGCGCCGCCACTGTCCGGCCACAGCCTAACGCTCTTCGCTGTCGTTTGTGGTCTCGCGCAGGGCGGCCCCGGTTCTGGTGTTTGGCGTCGGAATTAAACAACCACCATGTCGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGTGCAACATCCAATGTGTTTGCCATGTTTGACCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGCTTCATCGACAAGGAAGATTTGCATGATATGCTTGCTTCTCTAGGGAAGAATCCCACTGATGCATACCTTGATGCCATGATGAATGAGGCCCCAGGGCCCATCAATTTCACCATGTTCCTGACCATGTTTGGTGAGAAGTTAAATGGCACAGATCCTGAAGATGTCATCAGAAACGCCTTTGCTTGCTTTGATGAAGAAGCAACAGGCACCATTCAGGAAGATTACCTAAGAGAGCTGCTGACAACCATGGGGGATCGGTTTACAGATGAGGAAGTGGATGAGCTGTACAGAGAAGCACCTATTGACAAAAAGGGGAATTTCAATTACATCGAGTTCACACGCATCCTGAAACATGGAGCCAAAGACAAAGATGACTGAAAGAACTTTAGCTAAAATCTTCCAGTTACATTGTCTTACTCTCTTTTACTTCTCAGACACTTCCCCCACCCTCATAGAACCTGTTGCATGCAACTTAGTTTCACAGCTTTGCCTCTTCTTTTTGATGTATTTATTCCAGACCTTTCTGCCACTTAGCACTTGTATAATCAGACTGGAAATGGGGATGAGGGTGTAAATTGTATTGAAAAAGATCGCGAATAAAAATCAACAAATGTGAAAGCCCAGAAAAATATATTCGTATTTCTGGTTTTGCTGGATTTTTACATTTTTATATAATAAAAATGTTATTTTGAAATAAAGATTATGCTGACTCAAATGCAATGTAATGGCAAGTTAAACAAATGATTGATAGGTGGGGGTAGTCCTTTTTTCAGGTTTTCAACTTCATATGATTCAGGTTTTATGGTAAAATTGATTTTTCACATATATGGGACAGTGTTCTTCAGAACTTTTAAGTACCCTTTAACATTATTATGCAGTAAAAACTAGTTATGCCATTGTTT

Publications

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