Retrocopy Name | ABCA11P |
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Species | Homo sapiens | |
Coordinates (hg38) | chr4:424960-427880 UCSC | |
Coordinates (T2T) | chr4:418355-421275 UCSC | |
Coordinates (hg19) | chr4:418749-421669 UCSC | |
Strand | - | |
Parental Sequence | NM_080282.4 | |
Parental seq. overlap | 2755 bp | |
Parental seq. overlap (%) | 43.2% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | ABCA11P, located on chr4:424960-427880, is a retrocopy of the parental gene ABCA10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | ABCA10 |
Full Name | ATP binding cassette subfamily A member 10 |
Also known as | EST698739 |
Coordinate | chr17:69148007-69244848 |
Strand | - |
Gene summary | The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This encoded protein is a member of the ABC1 subfamily. Members of the ABC1 subfamily comprise the only major ABC subfamily found exclusively in multicellular eukaryotes. This gene is clustered among 4 other ABC1 family members on 17q24, but neither the substrate nor the function of this gene is known. [provided by RefSeq, Jul 2008] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | ABCA10P1 |
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Bonobo | Pan paniscus | ABCA10P1 |
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Gorilla | Gorilla gorilla | LOC115934637P1 |
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Orangutan | Pongo abelii | ABCA10P1 |
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Gibbon | Nomascus leucogenys | LOC115838405P1 |
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Green monkey | Chlorocebus sabaeus | ABCA10P1 |
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Crab-eating macaque | Macaca fascicularis | ABCA6P1 |
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Rhesus | Macaca mulatta | ABCA10P1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | ABCA10P1 |
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Baboon | Papio anubis | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>ABCA11P |
ATCAAATATTGAAGACTTTGTGCATTCACTGAAGCGTCAGGATATAGTTTTGGAAATAGATGACCTCAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATGGAGCCATCATAGTGTCTGGTGACCAGAAGGATTAGATTTTCAGTTGCATGTAATACCAAGAAATCGAATTGTTTTCCGTTCTTATGGGAATTGTTAGCAATGCCCTTATTGGAATTTTTAACTTCACAGAGCTTATTCAAATGGAGAGCACCTTATTTTTTCGTGATGACATAGTGCTGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCATTTCTCCTTATATTGGCATAAGCAGCATCAGTGATTATTAAAAAAAGTTCAATCTCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATAATGGTGTGGACAGGCTCTGGTGGACATTCCATTACACTTCTTGATTCTCCTTTCAATACATTTAATTTACTACTTCTCATTTCTGGGATTCCAGCTTCCATGGGAACTCATGTTTGTTTTGGTGGTATGCATAATTGGTTGTGCAGCTTCTCTTGTATTCCTCATGTACGTGCTTTCATTCATCTTTTGCAAGTGGAGAAAAAATAATGGCTTTTGGTCTTTTGGCTTTTTTATTGTCTTAATATGTGTATCCACAATTCTGGTATCAACTAAGTAAGAAAAACCCAACTTAATTTTGTGCATGATATTCATACCTTCCTTTACTTTCCTAGGATATGTCGTTATTGATCCAGCTCAACTTTATGTATATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAAACTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTATGCAGCCGTGAAAGGACTGGGCAAAGATGCTGCTCTTAGTATTTCATGATTGGTGGAAGCTCTCAAGCTCCAGGAGCAACTTAAGGCTCCCGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTATGCTTCGTGCTGAGCATACTGGGGAACCCATCAGTGGTGCTTCTAGACGAGCTGTTCACCGGGATGGACCCTGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCATTAAAAACCAGGAGAGGGGCGCCCTCTTGACCACCCATTACATGTCAGAGGCTAAGTCTCTGTGTGACCGTGTGGCCATCATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACAGCTGAAAAGTTTGGTAAAGATTATTTACTAGAAATAAAAATGAAAGAACCTACTCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCATGTAAGTTACCTGTGGAGGATGTCCACCCTCTGTCTCAGGCCTTTTTCAAATTAAAGGCAGTGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTGTTCTTAGAACTCTGTAAAGAGCAGGCGCTGGGAAATGTTGATGATAAAATTGATATAACAGTTCGATGGAAACTTCTCCCACGGGAAGATTCTTAAAACGAAGAACCTCCTAACATTCAATTTTAAGTCCTACTGCATTATTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAATATTCAATAGTTTAAACATGCAACAATGATTAAAGTTTTCATTTTTAAAAATTTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGCAGACAAAATTAACAAACTCAGACATGTTATTCATCCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTTAAAATCATAAAATATTAGGTTTGTTTTTGGTTATTATCAATAAAGTTAACACTGAGCACATTTTACAAATAAAAATGAGTTTTTTGCCTAAATTTCAAATATATCAGCTATTTTTAAACATTAGTTACTCAGATTCTAATTTAATGTGACATTGACTATAAGAAGATCTGATGAAATGGCACAACATAACATTTAATTATAATGACATTCTGATTACAAAATAGGTGTGAATTTTAGTACATATTGAAATTATATGGAAGAAGATAACCATAATCTGTAAGAAAGTACCACAGTTAATATTTTCTTTAGCCAACTAATATTCAATGTATTTTTTATGGGTCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCACAGTTCACGAACATTTCCCATGTCCTTATAACACTTTTGTGTTATAAAATTGCTGCACTAATGTTATAGCTGTATTAATGTAATACCAGAGTTGTTGTGTTTGGGTTATATGTAAATTTATTTCTTATAAATAAAACTTTGAC |
>NM_080282.4 |
GCTAGTAGTACTAACAACGTTTTATAGGAGCACAATTAATTTTACTTAGGATAAGTGTTGTTATTATTGTTTTTATTGTTGTTCTGTTAGTTACTCAAAACTTCATTCTAATTGTGCCCTGAGTTTGTTAAAATACCATACTGTATTTTTGTGTAACATGTAAATAGGCATTAATTTTTGAGAAATAGAAATGTTTATCCTTAATGTATTTTTAATTTGCTAACATTGATTTTTTATTTTCTTTCCTGAAATAGCTTATTTCCTAAAATGAAAGAATTTATTCTCAGATGAATAATTTTTATATCAGCTATTCTTATCAGAGCAATAAACAAATACCAATGATGCGCTCAGCCAACAATTCATTACACTCTCTGAAGAGTAACTGGACAAGGAGAAAAACATAGGGAAAAAACCAACAGAATTTGTTGGCATGTTCTACACACAGACCATGGCTTTTCAGAAGCCAAGCTGAATCAAAACAGTTTTAAAAGAGGCAACCATTTGTAGAGGAGTCCTTGAAGGATTCTTCATTGTTTTCTTGGACAAAAAGAGACCAGTGGATCCAAGTGCTTCAAATACTTCTCTCTTATTTTCTTAACTCTATTGCTCTGCAATATTTACTTTACCCTGTTAATGAACAGGACAAAATGGTTAAAAAAGAGATAAGCGTGCGTCAACAAATTCAGGCTCTTCTGTACAAGAATTTTCTTAAAAAATGGAGAATAAAAAGAGAGTTTATTGGAATGGACAATAACATTGTTTCTAGGGCTATATTTGTGCATCTTTTCGGAACACTTCAGAGCTACCCGTTTTCCTGAACAACCTCCTAAAGTCCTGGGAAGCGTGGATCAGTTTAATGACTCTGGCCTGGTAGTGGCATATACACCAGTCAGTAACATAACACAAAGGATAATGAATAAGATGGCCTTGGCTTCCTTTATGAAAGGAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAGAACACTGTTGGGCCATGCATGGTGAAATTTTTTGTTACTTGGCAAAGTACTGGCTAAAAGGGTTTGTAGCTTTTCAAGCTGCAATTAATGCTGCAATTATAGAAGTCACAACAAATCATTCTGTAATGGAGGAGTTGACATCAGTTATTGGAATAAATATGAAGATACCACCTTTCATTTCTAAGGGAGAAATTATGAATGAATGGtttcattttacttgcttagtttctttctcttctttTATATACTTTGCATCATTAAATGTTGCAAGGGAAAGAGGAAAATTTAAGAAACTGATGACAGTGATGGGTCTCCGAGAGTCAGCATTCTGGCTCTCCTGGGGATTGACATACATTTGCTTCATCTTCATTATGTCCATTTTTATGGCTCTGGTCATAACATCAATCCCAATTGTATTTCATACTGGCTTCATGGTGATATTCACACTCTATAGCTTATATGGCCTTTCTTTGATAGCATTGGCTTTCCTCATGAGTGTTTTAATAAGGAAACCTATGCTCGCTGGTTTGGCTGGATTTCTCTTCACTGTATTTTGGGGATGTCTGGGATTCACTGTGTTATATAGACAACTTCCTTTATCTTTGGGATGGGTATTAAGTCTTCTTAGCCCTTTTGCCTTCACTGCTGGAATGGCCCAGATTACACACCTGGATAATTACTTAAGTGGTGTTATTTTTCCTGATCCCTCTGGGGATTCATACAAAATGATAGCCACTTTTTTCATTTTGGCATTTGATACTCTTTTCTATTTGATATTCACATTATATTTTGAGCGAGTTTTACCTGATAAAGATGGCCATGGGGATTCTCCATTATTTTTCCTTAAGTCCTCATTTTGGTCCAAACATCAAAATACTCATCATGAAATCTTTGAGAATGAAATAAATCCTGAGCATTCCTCTGATGATTCTTTTGAACCGGTGTCTCCAGAATTCCATGGAAAAGAAGCCATAAGAATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAGGCATATTTTTTGACATATATGAAGGACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAGGATCAGCCACTATTTATAATACTCAACTCTCTGAAATAACTGACATGGAAGAAATTAGAAAGAATATTGGATTTTGTCCACAGTTCAATTTTCAATTTGACTTCCTCACTGTGAGAGAAAACCTCAGGGTATTTGCTAAAATAAAAGGGATTCAGCCAAAGGAAGTGGAACAAGAGGTAAAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACACTAGGGATTGCCATCTTAGGAGATCCTCAGGTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGAGCCTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTGATAGGAAAGTATTTCTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAGTTTACACAGGAATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAGATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAGATTTTGACATTGGGAAACAAGAGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTTGTTACTAGTACTTGGAATTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCACCCAGTATGTATTTCCTTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAGGATCAAATATTGAAGACCTCGTGCATTCACTGAAGTGTCAGGATATAGTTTTGGAAATAGATGACTTTAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATGGAGCCATCATAGTGTCTGGTGACCAGAAGGATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGGGAATTGTTAGCAATGCCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGTGATGACATAGTGCTGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATTATAAAAAAAATGTTCAATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTATACTTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTGGTATGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTTGGTCTTTTGGCTTTTTTATTATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGATTTTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAATGAAGTATGGAAATGAAATAATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGGAGTAGAGAAACTCATCCCAATCCGGAAGAGCCCGAAGAAGAAGATGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTGCTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAAGTTGCTTTTCAACAAGAAAGAAGAAAATAGCCATCAGAAATGTTTCCTTTTGTGTTAAAAAAGGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGTAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAAAGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAGCAGAGCATCAGTAAGGCAACAGCATGACAACAGCCTCAAGTTCTTGGGGTACTGCCCTCAGGAGAACTCACTGTGGCCCAAGCTTACAATGAAAGAGCACTTGGAGTTGTATGCAGCTGTGAAAGGACTGGGCAAAGAAGATGCTGCTCTCAGTATTTCACGATTGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTGTGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTGACCGTATGGCCATGATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAGAAATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGATGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATAAAATTGATACAACAGTTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTACATTGTTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAGTTTTCATTTTTAAAAATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCATCCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACACTGAGAACATTTTACAAATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAATTTAATGTGACATTGACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAATAAATGCATGTGAATTTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTTAGCCAACTTATATTCAATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCACAGTTCATGAACATTTCCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAGTTGTTACGTTCGGGTTATATGCAAGTTTATTTCTTAGAAATAAAACTTTGATGGACTTTT 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