Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LDHAP1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:4893623-4895244  UCSC
Coordinates (T2T) chr4:4863232-4864853  UCSC
Coordinates (hg19) chr4:4895350-4896971  UCSC
Strand -
Parental Sequence NM_005566.4
Parental seq. overlap 1470 bp
Parental seq. overlap (%) 65.3%
Genomic Region Intergenic
Retrocopy Summary LDHAP1, located on chr4:4893623-4895244, is a retrocopy of the parental gene LDHA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LDHA
Full Name lactate dehydrogenase A
Also known as GSD11|HEL-S-133P|LDHM|PIG19
Coordinate chr11:18394563-18408425
Strand +
Gene summary The protein encoded by this gene catalyzes the conversion of L-lactate and NAD to pyruvate and NADH in the final step of anaerobic glycolysis. The protein is found predominantly in muscle tissue and belongs to the lactate dehydrogenase family. Mutations in this gene have been linked to exertional myoglobinuria. Multiple transcript variants encoding different isoforms have been found for this gene. The human genome contains several non-transcribed pseudogenes of this gene. [provided by RefSeq, Sep 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LDHAP4
Gorilla Gorilla gorilla LOC101137282P4
Orangutan Pongo abelii LDHAP4
Gibbon Nomascus leucogenys LOC100604698P6
Green monkey Chlorocebus sabaeus LOC103217070P5
Crab-eating macaque Macaca fascicularis LOC102118498P2
Rhesus Macaca mulatta LDHAP2
Baboon Papio anubis LDHAP2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104667647P1
Marmoset Callithrix jacchus LDHAP2
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LDHAP1
GATCTCCTTGCCATGTGCCCCCGATGGCCACCCGATGTGCATTCCCGATTCCTTTTGGTTTGAAGTCCAATATGGCAATTCTCAAGGATCAGCTGATTCATAATCTTCTAAAGGAAGAACAGACCCCCCAGAATATGATTATAGTTGTTGAGGTTGGTGCTGTTCACATGGCCTGTGCCATCAGTATCTTAGTGAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCATGGAGGACAAATTGAAGGGAGAGATGATGAATCTCCAACATGGCAGCCTTTTCCTTGGAATGCCAAAGATTGTCTCTGGCAAAGACTATAATGTAACTGCAAATTCCAAGCTGGTCATTATCACAGCTGGGGCACATCAGCAAGAAGGAGAAAGCTCTCTTAATTGGGTCCAGTGTAATGTAAACATCTTTAAATTCATCATTTCTAATGTTGTAAAATACAGCCCAACTGCAAGTTGCTTATTGTTTTAAATCCAGTGGATATCTTGACCTGTGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAGCCGTGTTATTGGAAGTGGCTGCAGTCTGGATTCAGCCCAATTCCGTTACCTGATGGAGGAAAGGCTGGGTGTTCACCCATTAAGCTGTCATAGGTGAGTTCTTGGGGAACATGGATACTCTACTGTGTCTGTATGGAGTGGAGTGAACGTTGCTGGTGTCTCCCTGAGGACTCTGCATCCAGATTTAGGGACTGATACAGATAAGGAATGGTGGAAAGAGGTTCAAAAGCAGGTGGTCAAGAATGCTTATGAGGTGATTAAACTGAAAGGCTACACTTCCTGGGCCTTTGGACTCTCTGTGGCAGATTTGGCAGAGAGTATGATGAATCTTAGGTGGGACACCCAATTTCCATCATGATTAAGGGTCTCTATGGAATAAAGGATGATGTCTTCCTTAGTGTTCCTTGCATCTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCTGTTTGAATAAGAGTGCAGATACTTTGGGGGATCCAAAAAGAGCTGCAATTTTAAAGTTTTCTGAGATCACACCACTTCACTGTCTAGGCTACAACAGGATTTTAGTTGGAGGTTGTGCATGTTGTCCTTTTTATCTGATCTGTGATTAAAGCAGTAATATTAAGACAGACTTGGAAAAGCATCAATTCCTAAAGTTAGAAAGAGGCATGGTTTGTAAAATCCTACAGCTATATCCTGATGCTTCATGGTACTAATCTCGCATAGTCCTATAAGTCTACCACCTTTGAGGCACCACTGCCAATGCTGCAAATGCTGCAGTTACCCCTTGAGCCAGATGGATGTTTACTGTGTGTTATATAACTTCCTGGCTCCTTCACCGAACATGCCTAGTCCAACATTTTTTTCCAATCAGTCACATCTTAGGATCCAGTGTATAAATCCAATATTGCATGTCTTGTGCATAATTGTTCCAAAGGATCTTATTCTGTGGACGATATATATCAGTCGTACACATTGCCGTATAGTGCAAAAAGAAACATCTACATATAAACAATGCAACCAACTATCCAAGTGTCATACCAACTAAAACCCCCAATAAACCTTGAACAGTGAA
>NM_005566.4
GTGCTGCAGCCGCTGCCGCCGATTCCGGATCTCATTGCCACGCGCCCCCGACGACCGCCCGACGTGCATTCCCGATTCCTTTTGGTTCCAAGTCCAATATGGCAACTCTAAAGGATCAGCTGATTTATAATCTTCTAAAGGAAGAACAGACCCCCCAGAATAAGATTACAGTTGTTGGGGTTGGTGCTGTTGGCATGGCCTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCATCGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATTGTCTCTGGCAAAGACTATAATGTAACTGCAAACTCCAAGCTGGTCATTATCACGGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTATTGTTTCAAATCCAGTGGATATCTTGACCTACGTGGCTTGGAAGATAAGTGGTTTTCCCAAAAACCGTGTTATTGGAAGCGGTTGCAATCTGGATTCAGCCCGATTCCGTTACCTAATGGGGGAAAGGCTGGGAGTTCACCCATTAAGCTGTCATGGGTGGGTCCTTGGGGAACATGGAGATTCCAGTGTGCCTGTATGGAGTGGAATGAATGTTGCTGGTGTCTCTCTGAAGACTCTGCACCCAGATTTAGGGACTGATAAAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTGCTTATGAGGTGATCAAACTCAAAGGCTACACATCCTGGGCTATTGGACTCTCTGTAGCAGATTTGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTTCCACCATGATTAAGGGTCTTTACGGAATAAAGGATGATGTCTTCCTTAGTGTTCCTTGCATTTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTTCTGAGGAAGAGGCCCGTTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAAAAGGAGCTGCAATTTTAAAGTCTTCTGATGTCATATCATTTCACTGTCTAGGCTACAACAGGATTCTAGGTGGAGGTTGTGCATGTTGTCCTTTTTATCTGATCTGTGATTAAAGCAGTAATATTTTAAGATGGACTGGGAAAAACATCAACTCCTGAAGTTAGAAATAAGAATGGTTTGTAAAATCCACAGCTATATCCTGATGCTGGATGGTATTAATCTTGTGTAGTCTTCAACTGGTTAGTGTGAAATAGTTCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACTGCATTTGCCCCTTGAGCCAGGTGGATGTTTACCGTGTGTTATATAACTTCCTGGCTCCTTCACTGAACATGCCTAGTCCAACATTTTTTCCCAGTGAGTCACATCCTGGGATCCAGTGTATAAATCCAATATCATGTCTTGTGCATAATTCTTCCAAAGGATCTTATTTTGTGAACTATATCAGTAGTGTACATTACCATATAATGTAAAAAGATCTACATACAAACAATGCAACCAACTATCCAAGTGTTATACCAACTAAAACCCCCAATAAACCTTGAACAGTGACTACTTTGGTTAATTCATTATATTAAGATATAAAGTCATAAAGCTGCTAGTTATTATATTAATTTGGAAATATTAGGCTATTCTTGGGCAACCCTGCAACGATTTTTTCTAACAGGGATATTATTGACTAATAGCAGAGGATGTAATAGTCAACTGAGTTGTATTGGTACCACTTCCATTGTAAGTCCCAAAGTATTATATATTTGATAATAATGCTAATCATAATTGGAAAGTAACATTCTATATGTAAATGTAAAATTTATTTGCCAACTGAATATAGGCAATGATAGTGTGTCACTATAGGGAACACAGATTTTTGAGATCTTGTCCTCTGGAAGCTGGTAACAATTAAAAACAATCTTAAggcagggtgcagtggctcatgcctataatcccagcactttgggaagcccaggtgggctgatcactggaggccaggaattggggaccagcctggccaacacaacaaaaccccatctgttaaaaaaacaaaaCAAAACCAAAAAAAACAAGTAACCTTGGTGGATGTCTACTCAAGTTTTCTGCACATTTTTCTGAAAATACAACTGTGACCCTTA

Publications

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