Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TXNDC9P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:56760920-56761610  UCSC
Coordinates (T2T) chr4:60248850-60249540  UCSC
Coordinates (hg19) chr4:57627086-57627776  UCSC
Strand -
Parental Sequence XM_017003147.2
Parental seq. overlap 666 bp
Parental seq. overlap (%) 49.6%
Genomic Region Intergenic
Retrocopy Summary TXNDC9P1, located on chr4:56760920-56761610, is a retrocopy of the parental gene TXNDC9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TXNDC9
Full Name thioredoxin domain containing 9
Also known as APACD|PHLP3
Coordinate chr2:99306184-99336385
Strand -
Gene summary The protein encoded by this gene is a member of the thioredoxin family. The exact function of this protein is not known but it is associated with cell differentiation. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TXNDC9P1
Bonobo Pan paniscus TXNDC9P1
Gorilla Gorilla gorilla TXNDC9P1
Orangutan Pongo abelii TXNDC9P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TXNDC9P1
AGCCGCTGGCAGCTACTGCAAGGTTAAAGCCGGAGTGGACCTGTTTTTTGAAACTGCTGCTCTTTCACTTCTCAGGCATCACCGAGAGCTCAGCACCCAGGCTGAACTCTGTACCATTCAGAAGAATGGAAGCTGATGCATCTGTTGACATGTTTTCCAAAGTCCTGGAGAATCAGCTGCTTCAGACTACCAAACTGGTGGAAGAACATTTGGATTCTGAAATTCAAAAACTGGATCAGATGGATGAGGATGAATTGGAACACATTAAAGAAAAGAGACTCGAGGCACTAAGGAAAGCTCAACAGCAGAAACAAGAATGGCTTTCCAAAGGACATGGGGAATACAGAGAAATCCCTAGTGAAAGAGACTTTTTTCAAGAAGTCAAGGAGAGTAAAAAAGTGGTTTGCCATTTCTACAGAGACTCCACATTCAGGTGTAAAATACTAGACAGATTTCTGGCGATATTGTCCGAGAAACACCTCGAGACCAAATTTTTGAAGCTGAATGTGGAAAAAGCACCTTTCCTTTGTGAGAGACTGCATATCAAAGTCATTCCCATACTAGCACTGGTAAAAGATGGGAAAACACAAGATTATGTTGTTGGGTTTACTGACCTAGGAAATACAGATGACTTCACCACAGAAACTTTAGAATGGGGGCTCAGTTGTTCTGACATTCTTAATTACAGGTA
>XM_017003147.2
GATATCGCGCGAGGTTCGCAGCCAATAAGGAGGCGGATGTGACGGCCCGTTTGCAGCCGCCGGCAGCTACTGCAAGGCAAAAGCCGGAGTGGACGTGTCTTTTGAAACTGCTGCTCTTTCACTTCTCAGGCGTCACCGAGAGCTCAGCACCCAGGCTGAACTCTGTACCATTTGGAAGAATGGAAGCTGATGCATCTGTTGACATGTTTTCCAAAGTCCTGGAGCATCAGCTGCTTCAGACTACCAAACTGGTGGAAGAACATTTGGATTCTGAAATTCAAAAACTGGATCAGATGGATGAGGATGAATTGGAACGCCTTAAAGAAAAGAGACTCCAGGCACTAAGGAAAGCTCAACAGCAGAAACAAGAATGGCTTTCTAAAGGACATGGGGAATACAGAGAAATCCCTAGTGAAAGAGACTTTTTTCAAGAAGTCAAGGAGAGTGAAAATGTGGTTTGCCATTTCTACAGAGACTCCACATTCAGGTGTAAAATACTAGACAGACATCTGGCAATATTGTCCAAGAAACACCTCGAGACCAAATTTTTGAAGCTGAATGTGGAAAAAGCACCTTTCCTTTGTGAGAGACTGCATATCAAAGTCATTCCCACACTAGCACTGCTAAAAGATGGGAAAACACAAGATTATGTTGTTGGGTTTACTGACCTAGGAAATACAGATGACTTCACCACAGAAACTTTAGAATGGAGGCTCGGTTCTTCTGACATTCTTAATTACAGgtggtggccctagggccgtaggttgctggcccctgTTCTGAACCACCGAGAGATACCAGTTCACATGTCCTCAGTTCAGCAATGTGGGGAGAGATGATCGGCTGGATGATGCTATTTTACAGACACCCAGGACCTACAGCATGTTCCAAATGTCTACATCAATAAGTACTTTGAGAGGGTTCATATGAAGTTTCCAGGAAGGATTCCTTCCCAAGTTGTGGAAAGGGTGCATTTCACGACTGAAAGAGGGAGccccctccctcaccacaccctgtgccccagctcaactaagcagcttgattttccccaaacacagcgccattctttgcattaggccttcctacaggctgtttgctttTTATCTAACCCCTCAGGGACAGGGGCTGTGTCTCAGAAACTTGTGCTATGAGCCACCATGTCCCTGGCTTGTCCTTTCAGACCTCCTGGATCCTCACTTTTTCAAGAAAACGTTCACACTTGTCTCAAAGTCTTATTCTTGACTCTGTCATGCTGAGTGGGTTCAATGTCCATTTAGATGGCTGGATTCAATTCTCTGGTCTCTCCTTTTTTGTGTGTTTTTTACTTATAAGAAATCATGAggc

Publications

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