Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PMPCAP1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:92181955-92184062  UCSC
Coordinates (T2T) chr4:95508472-95510579  UCSC
Coordinates (hg19) chr4:93103106-93105213  UCSC
Strand -
Parental Sequence NM_001282946.2
Parental seq. overlap 1876 bp
Parental seq. overlap (%) 87.7%
Genomic Region Intergenic
Retrocopy Summary PMPCAP1, located on chr4:92181955-92184062, is a retrocopy of the parental gene PMPCA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PMPCA
Full Name peptidase, mitochondrial processing subunit alpha
Also known as Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2
Coordinate chr9:136410658-136423761
Strand +
Gene summary The protein encoded by this gene is found in the mitochondrion, where it represents the alpha subunit of a proteolytic heterodimer. This heterodimer is responsible for cleaving the transit peptide from nuclear-encoded mitochondrial proteins. Defects in this gene are a cause of spinocerebellar ataxia, autosomal recessive 2. [provided by RefSeq, Mar 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PMPCAP1
Bonobo Pan paniscus PMPCAP1
Gorilla Gorilla gorilla PMPCAP1
Orangutan Pongo abelii PMPCAP1
Gibbon Nomascus leucogenys PMPCAP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PMPCAP1
GGAGACTCAAGATGGCGGCTACGGTGCTGGCGGCTACGCGGTCGCTGAGGGGCTCAGGTTCTCGGGGCCGCTAGCGGCTGAGGTTTGGACCTCCTGCGTACAGACAGTTTAGTAGTGGTGGCACCTATCCCAACATCCCCCTCTCTTCTGCCTTACCTGGAGTACCCAAGCATGTTTTTGCTACAGTTGATGGACAGGAAAAGTTTGAATCCAAAGTTTCAAACCACATTGGATAACGGGTTTCGCGTGGCCTCTCAAAATAAGTTTGGACAGTTTTGTATAGTAGGAATTCTTATTAATTCAGGATCAAGATATGAAGCAACATACCTTAGTGGAATTGCTCACTTTTTGGAAAAATTGGCATTTTCTTCTAATGCTCGATTTAACAGCAAAGATGAAATACTGCTTACGTTGGAAAAGCATGGAGGTATTTGTGACTGCCAGACATCAAGTGACACCACCACGTATGCTGTGTCTGCTGATAGTAAAGGCTTGGACACGGTGTTCGGCTTACTGGCTGATGCGGTTCTGCAGCCCCAGCTAACAGATGAAGAAGTCGAGATGATGCAGATGGCGGTCCAGTTTGAGCTGGAGGACCCGAACATGCAGCCTGACCCAGAGCCACTCCTCACCGAGATGATTCATGAAGCGGCTTACAGGCTCTACCTCAACGTGCTCAACAGGCACCACAGTTGGCCTCCACCGTTTCTGTCCCACAGAAAACATAGCAAAGATCAATCGGGAAGTGCTGCATTCCTACCTGCGGAATTACTACACCCCCGACCGCGTGGTACTGGCTGGCGTGAGTGTGGAGGACCAGCACCTGGTGGAATGTGCCCGGAAGTACCTCCTGGGGGTCCAGGCGGCTTGAGGGAGCGCGGAGGCTGTGGATGTTGACAGTGGCCCAGTACACTGGGGGGATTGCCAAGCTAGAAAGAGACGTCAGCCTGGGCCCGACCCCCATCCCCGATGGGGGATCAGACTGGAGAGCTGCTCCTTCCTGGAGGAGGACTTCATCCCCTTCGCTTTGTTGAACATGATGATGGGCGGAGGCGGCTCCTTCTCGGCTGGCAGGCCCAGCAAGGGCATATTCTCCAGGCTCTACCTCGATGTGCTCAGCAGGCACCACTGGATATATAACGCGACCTCCTACTACCTCAGCTACGAGGACACTGGCCTCCTGTGCATCCTTGCCAGCGCCGACCCGAGGCAGGTTCCAGAAATGGTAGAAATCACCACAAAGGAGTTTATTTTAATGGGCGGAACCGTGGACGCGGTGGAGCTGGAACGAGCCAAGACGCAGCTGACGTCCATGCTCATGATGAACCTGGAGTCCAGGCCTGTGATCTTCGAGGATGTGGGGAGGCAGGTGCTGGCCACTCGCTCCAGAAAGCTGCCGCAGGAGCTGTGCACGTTCATCCGCAACGAGAAGCCGGAAGACGTGAAGAGAGTTGCTTCTAAGATACTCCAGGGGAAGCCGGTAGTGGCCGCCCTGGGCAAATCGACCGACCTGCCCGCTTACAAGCACATCCAGACCGCCCTGTGGAGCAAGGACGGGCGCCTGCTCAGGACTTACCGGATCTTCCGGTAGAGCCGCTCCCTGGCCTGATGGACCCAGGAGCTGCAGCTGGAGCCTGTTCCCGTGCGTGTTAGTTTGGACACGAATTTAGTCTAAAACGCTGTCTGGTTGTATAAACAGTGCAAACAATGTCGCCAGAGCACCCACGCAGTTTGCATTCCTTCAGAACCTGAATGTGCCAATCAGTGGAGTAAATACTGACCCTGACCACGGCAAGCCAGGAAGCAGGTGAAGTGCGGAGCGCTGGAGGGCAGCGTGCCATGAGGAGGCTGGGTCAGCGCTCCCCCTCCTCAGGGGCTCTCTAGGCACATGGTGTCCCGCAGGTTCCTTGAGAGGAGCAAGCCCTGAGCCGGGAAGCAGCAGAGGCCAAACTATCAGAGCCTCCCCAGAGGCCACCAACTTCCTGTGTCAGGTACCAGGACTCACCTCTGACAAACGGGAGAAGGCAAGGGCCTGGTCTACTCCGAGGAGCGCGGTCCACGCGTGTGCACGCCCGCTTCCCTGGTAGTAAAGAGCTGGCATCTTTCTA
>NM_001282946.2
ggagacgcaagATGGCGGCTGTGGTGCTGGCGGCGACGCGGTTGCTGCGGGGCTCGGGTTCTTGGGGCTGTTCGCGGCTGAGGTTTGGACCTCCTGCGTACAGACGGTTTAGTAGTGGTGGTGCCTATCCCAACATCCCCCTCTCTTCTCCCTTACCTGGAGTACCCAAGCCTGTTTTTGCTACAGTTGATGGACAGGAAAAGTTTGAAACCAAAGTAACCACATTGGATAATGGGCTTCGCGTGGCATCTCAGAATAAGTTTGGACAGTTTTGTACAGTAGGAATTCTTATCAATTCAGGATCGAGATATGAAGCGAAATACCTTAGTGGAATTGCTCACTTTTTGGAAAAATTGGCATTTTCGTCTACTGCTCGATTTGACAGCAAAGATGAAATTCTGCTTACGTTGGAAAAGCATGGGGGTATCTGTGACTGCCAGACATCAAGACACCACCATGTATGCTGTGTCTGCTGATAGCAAAGGCTTGGACACGGTGGTTGCCTTACTGGCTGATGTGGTTCTGCAGCCCCGGCTAACAGATGAAGAAGTCGAGATGACGCGGATGGCGGTCCAGTTTGAGCTGGAGGACCTGAACCTGCGGCCTGACCCAGAGCCACTTCTCACCGAGATGATTCATGAAGCGGCTTACAGGGAGAACACAGTTGGCCTCCACCGTTTCTGCCCCACAGAAAACGTAGCAAAGATCAACCGAGAGGTGCTGCATTCCTACCTGAGGAACTACTACACTCCCGACCGCATGGTGCTGGCCGGCGTGGGCGTGGAGCACGAGCATCTGGTGGACTGTGCCCGGAAGTACCTCCTGGGGGTCCAGCCGGCCTGGGGGAGCGCAGAGGCCGTGGATATTGACAGATCTGTGGCCCAGTACACTGGGGGGATTGCCAAGCTAGAAAGAGACATGTCCAATGTCAGCCTGGGCCCGACCCCCATCCCCGAGCTCACGCACATCATGGTTGGACTGGAGAGCTGCTCCTTCCTGGAGGAGGACTTCATCCCCTTTGCAGTGTTGAACATGATGATGGGCGGAGGTGGCTCCTTCTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCAGGCTCTACCTCAACGTGCTCAACAGGCACCACTGGATGTATAACGCGACCTCCTACCACCACAGCTACGAGGACACTGGCCTCCTTTGCATCCATGCCAGCGCCGACCCAAGACAGGTTCGAGAAATGGTAGAAATCATCACAAAGGAGTTTATTTTAATGGGCGGAACCGTGGACACGGTGGAGCTGGAACGAGCCAAGACGCAGCTGACATCAATGCTCATGATGAACCTGGAATCCAGGCCTGTGATCTTCGAGGATGTGGGGAGGCAGGTGCTGGCCACTCGCTCCAGAAAGCTGCCGCACGAGCTGTGCACGCTCATCCGCAACGTGAAGCCGGAAGATGTGAAGAGAGTCGCTTCTAAGATGCTCCGAGGGAAGCCGGCAGTGGCCGCCCTGGGTGACCTGACTGACCTGCCCACGTATGAGCACATCCAGACCGCCCTGTCGAGTAAGGACGGGCGCCTGCCCAGGACGTACCGGCTCTTCCGGTAGAACCGCTCCCCGGCCTGACAGACCCAGGGAGCTGCAGCTGGAGCCCGTTCCCGTGCGTGTTAGTTTGGACACGAATTTAGTCTAAAAAGCTGTCTGGTTGTATAAACGGTGCAAACAATGTCGCCACAGCACCCACGCGGTTTGCATTCTTTTGGAACTCAATGTGCCGATCAGTGGAGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAGCAGGTGAAGTGCCCAGCGCTGGAGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGGCCCCGCAGGTTCCTTGGAGGAGCCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACCGTGCTGGGTACCAGGACTCACCTCTGACAAGCAGGAGAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAGCTTCCCTGGTAATAAAGAGCTGGCATCTTTCTTA

Publications

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