Retrocopy Name | PTPRDP1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr5:117719443-117722097 UCSC | |
Coordinates (T2T) | chr5:118231815-118234469 UCSC | |
Coordinates (hg19) | chr5:117055138-117057792 UCSC | |
Strand | - | |
Parental Sequence | NM_130393.3 | |
Parental seq. overlap | 663 bp | |
Parental seq. overlap (%) | 8% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | PTPRDP1, located on chr5:117719443-117722097, is a retrocopy of the parental gene PTPRD. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | PTPRD |
Full Name | protein tyrosine phosphatase receptor type D |
Also known as | HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA |
Coordinate | chr9:8314246-10613002 |
Strand | - |
Gene summary | The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular region, a single transmembrane segment and two tandem intracytoplasmic catalytic domains, and thus represents a receptor-type PTP. The extracellular region of this protein is composed of three Ig-like and eight fibronectin type III-like domains. Studies of the similar genes in chicken and fly suggest the role of this PTP is in promoting neurite growth, and regulating neurons axon guidance. Multiple alternatively spliced transcript variants of this gene have been reported. A related pseudogene has been identified on chromosome 5. [provided by RefSeq, Jan 2010] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | PTPRDP1 |
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Bonobo | Pan paniscus | PTPRDP1 |
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Gorilla | Gorilla gorilla | PTPRDP1 |
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Orangutan | Pongo abelii | PTPRDP1 |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>PTPRDP1 |
CCATGCAATAATTTCAAAAATCACCTTGTTAATATTACACCATATAAATCCACAAGGTTGTACTTGCAGCCTATCCATGGAGTAGAAGTATCTGGTTACATTAATGCCAGTTTTATTGATGAGTAAAGACAATAGAAAGCTTACATTAGGGACCCTTGAAAGAGATCACTGAGGACTTCCAGTGGATGCTCTGGAAACACAATTTCACCAAGCTGTGTGAAATGGGCAGAGAAAAATGTCACCAATACTGGCCAGCAGAATAATCCACAAGATACCAGTACTTTGTTGTAGATCCTGTGGCTGAGTACAACATGCCATAGTTTATCACAAGGGAATTTAAAGTCATAGATGCCAAGGACAGCCAGTCCTGAACAGTGAGACAGCTCCAGTTCACTGACTGCCCAGATTAAAAAGTGCCAAAGTCTGGAAAAAGATTTATTGACTTAATTGGCCAAGTGCATAAAACAAAAGAGTACTGTGGTCAAGATGGACCCAGTTCAGTTGGAGTTGGCTGGACTGGTTGTTTCATTGTCATAGATGCCATGTTGGAAAGAATCAAGCATGAAAAAACTGTAGGTAATTATGCCTATGCAACTTTAATGAGAACCCAGAGGAATTACATGGTTCAAGCAGGAGACCAGTGTATCTCTGTCCATGATGCACTGTTAGAGGCAGTTACTTGTGTAAATACCAAAGTTCCAGCTAGAAACTTGTATGCCTATATTAGAAACTGACACAAATAGAGAGGGGACAGAATGTCATAGGAGTGGTGCTCAAATTTAAGCATCTAATCAGCTCAAAAGCTCACATCTCAGGTTTCCTCAGTGCCAATCTTCCATGCAATAATTTCTTTTTATATATATATAt |
>NM_130393.3 |
GCTCTGAAAGTGTTCCAGCTGAAATTTCAGATCGGACAGACTCGCTGCGGCTCCGGAGGCAGTGATTCCAAGCTGCTCGCGCACGCTGCTGCCAAGCTGCAGGATGGTGCACGTAGCCAGGCTGCTGCTGCTGCTCCTCACTTTCTTCCTCCGCACGGATGCTGAGACACCTCCAAGGTTTACACGAACACCCGTTGATCAGACAGGGGTCTCTGGCGGAGTTGCCTCTTTCATCTGCCAAGCTACGGGAGACCCAAGACCTAAAATTGTCTGGAACAAAAAAGGAAAGAAAGTCAGCAATCAGAGATTTGAGGTAATAGAGTTTGACGATGGGTCTGGATCAGTTCTCAGAATACAACCCTTACGGACTCCGAGGGATGAGGCCATTTATGAATGTGTGGCCTCAAATAATGTGGGAGAAATAAGTGTATCCACCAGACTCACAGTTTTGCGGGAAGATCAAATTCCCAGGGGCTTCCCTACCATTGACATGGGCCCACAGTTGAAGGTGGTTGAGCGTACTCGCACGGCCACCATGCTTTGTGCAGCCAGTGGTAATCCGGATCCAGAAATCACTTGGTTTAAAGATTTCTTACCTGTGGACACAAGCAACAACAATGGTCGTATTAAGCAGTTACGATCAGAATCTATTGGAGCCCTTCAGATTGAGCAGAGTGAAGAGTCTGACCAAGGAAAATATGAGTGTGTTGCCACCAACAGCGCGGGCACTCGCTATTCCGCTCCTGCCAATTTATATGTCAGAGAGCTGCGAGAAGTTCGCCGTGTCCCACCAAGATTCTCTATCCCACCCACTAATCATGAAATCATGCCAGGCGGAAGCGTTAATATCACCTGTGTGGCCGTGGGGTCACCAATGCCTTATGTAAAGTGGATGTTGGGGGCAGAAGATCTGACACCTGAAGATGATATGCCAATAGGAAGAAATGTGCTAGAACTGAATGATGTAAGACAGTCAGCAAATTACACCTGTGTTGCTATGTCAACACTGGGTGTCATTGAAGCAATAGCACAGATCACTGTCAAAGCCTTACCCAAACCTCCAGGAACTCCTGTAGTGACCGAGAGCACAGCTACAAGCATCACACTGACGTGGGACTCTGGGAACCCTGAGCCTGTTTCTTATTACATAATTCAGCATAAACCTAAAAACTCTGAGGAACTTTACAAAGAAATTGATGGGGTGGCGACCACACGCTACAGTGTCGCTGGACTAAGTCCCTACTCGGATTATGAATTCAGGGTTGTTGCTGTCAATAACATTGGGCGGGGGCCTCCCAGCGAACCTGTGCTAACACAAACCTCAGAGCAAGCACCATCCAGTGCCCCGAGGGATGTCCAGGCACGAATGTTGAGTTCGACCACCATTTTGGTACAGTGGAAGGAACCTGAAGAGCCAAATGGACAGATCCAAGGATATAGAGTTTATTATACAATGGATCCCACTCAACATGTCAACAACTGGATGAAACACAATGTAGCTGACAGCCAAATCACTACTATTGGCAACTTAGTGCCCCAGAAAACATATTCTGTCAAAGTCCTGGCTTTTACCTCAATTGGAGATGGTCCCCTTTCAAGTGACATACAAGTCATCACTCAGACAGGAGTACCAGGGCAGCCACTAAACTTCAAAGCAGAACCTGAGTCTGAAACAAGTATTTTGCTCTCTTGGACACCTCCACGTTCAGATACCATTGCCAACTATGAACTGGTCTACAAAGATGGGGAGCATGGAGAGGAGCAACGAATTACCATTGAGCCAGGGACATCATATAGGCTGCAAGGACTGAAACCAAACAGCTTATACTATTTCCGTCTGGCTGCACGCTCCCCTCAAGGCCTGGGTGCTTCTACTGCAGAAATATCAGCTAGAACCATGCAGTCAACAGTGTTTGCAAAAAATTTTCATGTCAAAGCAGTAATGAAGACTTCCGTGTTGCTGTCTTGGGAGATTCCAGAGAATTATAACTCCGCCATGCCTTTCAAAATTCTTTATGATGATGGGAAAATGGTAGAAGAAGTGGATGGCCGAGCCACACAGAAGTTAATTGTCAACCTGAAGCCTGAGAAATCATATTCATTTGTGCTGACAAATCGTGGAAACAGTGCTGGTGGGCTGCAGCACAGGGTCACGGCAAAGACTGCACCAGATGTATTACGTACCAAGCCTGCCTTCATTGGGAAGACCAACTTGGATGGCATGATTACTGTGCAACTGCCTGAAGTACCTGCAAATGAGAATATAAAAGGTTACTACATAATAATTGTGCCTTTGAAGAAATCTCGCGGGAAATTTATCAAGCCATGGGAGAGTCCAGATGAAATGGAATTAGATGAGCTGCTTAAGGAGATATCTAGGAAGCGCAGAAGCATCCGTTATGGGAGAGAAGTTGAATTAAAGCCATATATTGCCGCTCACTTTGATGTCCTTCCCACTGAGTTCACCCTGGGGGATGACAAGCATTATGGTGGATTTACAAACAAGCAACTCCAAAGTGGTCAAGAATATGTCTTCTTTGTGTTAGCAGTAATGGAACATGCAGAGTCTAAGATGTATGCAACCAGCCCTTACTCCGACCCCGTGGTGTCAATGGATCTGGATCCGCAGCCAATCACGGATGAAGAAGAAGGCTTGATCTGGGTTGTAGGTCCTGTCCTTGCAGTGGTCTTTATCATCTGCATTGTCATTGCTATTCTTCTTTATAAAAGGAAGAGGGCAGAGTCCGACTCTAGAAAAAGCAGCATACCGAACAATAAGGAGATCCCTTCACACCACCCAACAGACCCTGTAGAACTGAGGCGCCTTAACTTTCAAACACCGGGTATGGCTAGCCATCCTCCAATACCCATCTTGGAACTTGCAGACCACATTGAAAGATTGAAAGCAAATGACAACTTGAAGTTTTCCCAGGAATATGAGTCAATTGACCCTGGCCAGCAGTTCACTTGGGAACATTCAAACTTGGAAGTAAACAAACCAAAGAATAGATACGCGAATGTAATCGCATATGATCATTCCCGGGTTCTCCTATCAGCTATAGAAGGGATCCCAGGAAGTGACTATGTGAATGCCAACTACATAGATGGGTATAGGAAGCAAAATGCCTATATTGCAACACAGGGATCTCTCCCCGAAACATTTGGGGACTTTTGGAGAATGATATGGGAACAACGGAGTGCCACAGTTGTCATGATGACAAAACTAGAAGAAAGATCAAGGGTGAAGTGTGACCAGTATTGGCCTAGCAGAGGCACAGAAACCCACGGACTCGTTCAAGTAACGCTGCTTGATACTGTGGAGCTGGCCACATATTGTGTTCGAACATTTGCACTTTACAAGAATGGTTCAAGTGAGAAGAGAGAAGTGAGACAATTCCAGTTCACCGCCTGGCCTGATCATGGTGTTCCAGAACACCCTACACCTTTTCTAGCTTTCTTACGTAGAGTCAAAACCTGTAACCCTCCCGATGCTGGTCCGATGGTTGTGCACTGCAGTGCGGGAGTTGGCCGGACTGGTTGCTTCATCGTCATAGATGCCATGTTAGAAAGAATAAAGCATGAAAAAACTGTAGATATTTATGGCCATGTAACTTTAATGAGAGCCCAGAGGAACTATATGGTTCAAACAGAAGACCAATACATCTTTATCCATGATGCACTGTTAGAAGCAGTGACTTGTGGAAATACCGAAGTGCCAGCTAGAAACTTGTATGCCTACATTCAGAAGCTGACACAAATAGAAACGGGAGAGAATGTCACAGGAATGGAGCTCGAATTTAAGCGTCTAGCCAGCTCAAAAGCTCACACCTCAAGGTTTATCAGTGCCAATCTTCCATGTAATAAATTCAAAAATCGCCTTGTTAATATTATGCCATATGAATCCACAAGGGTATGCCTGCAGCCTATCCGTGGAGTAGAAGGATCTGATTACATCAATGCCAGTTTTATTGATGGATACAGACAACAGAAAGCCTACATCGCTACCCAGGGGCCCTTGGCAGAGACCACTGAAGACTTCTGGCGGATGCTCTGGGAACACAATTCCACCATAGTTGTGATGCTCACCAAGCTGCGTGAAATGGGCAGAGAGAAATGTCACCAATACTGGCCAGCAGAACGGTCTGCAAGATACCAGTACTTTGTTGTAGATCCCATGGCTGAGTACAACATGCCACAGTATATCCTAAGGGAATTCAAGGTCACAGATGCCAGGGACGGCCAGTCCCGAACAGTAAGGCAGTTCCAGTTCACTGACTGGCCAGAGCAAGGAGTGCCAAAGTCCGGAGAAGGATTTATTGACTTCATCGGCCAAGTCCATAAAACAAAAGAACAGTTTGGCCAAGATGGACCCATTTCAGTCCATTGCAGCGCGGGCGTTGGAAGAACTGGAGTCTTCATAACGCTAAGCATTGTTTTGGAAAGAATGAGATATGAAGGAGTTGTAGATATCTTCCAGACTGTCAAAATGTTAAGAACACAACGACCAGCTATGGTACAGACAGAGGATCAATATCAGTTTTCCTATCGTGCCGCACTAGAGTACCTGGGCAGCTTTGACCACTATGCAACGTAGAAACCCCTGACCCATTCTGGATTTTTACTACAGGCCCTTCAATATCCATGGAGTCTCTTCTGAGCCATACAGGGCACTTGAGAAGTCCTTCTTAACTTCTAGCTAACAACTACTTAGTGGGACTATTACACACAAAACAAATTAAAAACAAATTATTCCAGGTGGACCAAGAATTCACAGTTTAATAATCTAACCTGAAAAATAATGAAGAGAATCCTGACTGATGAGGCATCTGAAGGATTTTATTTACAGATACCTCAAGGATTCAAAATCAAGGGAAGAAGAAATCACAGCAAAGAACCACCATCTTATTCAGGATTGCTTGAAAGGTGCAAGGAGAAATTGCCAGAATGCTGCAGTTCAGCACAAGATATGTGCTGGTGTGGCTTCTCACAATGAAACGGACTCTGCTTTGACATCGCCCCTTCCCACCATACTGCTCATAATAACATTTTAGGGGGAAAGGGGAGGGAATGTTTAAAAAGAAAGTCCTTGATTTAGTTTTTTAGTATTGTAAAGATACTGCTGACCTGTGCTTCATTTCTAACTGTGTAAACTTTTTTTTAACAAAATGTATCATTCGATAAAGTGAATTTTAAAAAAGTTACATAACTCTTCATTTTTTTATTTCCAAATCGTAGGTTTTTTTAAGCTGTAGAACTGTTATCTGTAATATCTTGCTGTAGAAATATCAAATCATTTGAAAATTTGCACATTTTTGTGCAAAACTCAATCTACAGTATCAGTCTCGTCAGATATATTAATTTTACACTTCAGTTTTGATTGGTGAGAAAGTACCCATTCTCTTCAAATAATCAAAGATAATTATTATTTTGTTTTGTTTTTGGAATCAACAGGGAGGCGCAAAGTATAAAGTTGCTGCTAACatatatacatatatatccatattttataagggtgtctatgtatatataGACAGTGTGTCCACACAAAAAATAGATACAGTTATCAGTCAGTCAGTTCTTCCATGATTTAGTTTTTTTAAACGTAGAAAAGCTATTGTAAACATCTCTTTCCATTTATTCTTAATTTTTTGACATATTGGTATTTCTTTAAAGGGAAATGAGGAATGCACATCAGTGATTGATTGTCAAACCTCACCCCCTGATTTCCTACCTAATCTACCCCCACCTAACCAATCAATCACATCCACAAATTGTTTTGTTTGTTTGTTAGTCAGGCTTCCAACAAAGTTCAATATTTCTAACACTCTAGTGCAATAAAAATTATTATTAAATAGCTAAGAGGTGTGCATGTGGGAAAGGTCAGTGCATATCCCTTTAGGAGGGGAGAATGTTGTAATATATCAGCTATCGAGTTGTTTAAAAAAAGTGTATTCAATCGTATATTGTCTATAGTATGTGCTATGAAATTTGCATTTATGATATGTAACAGGGGCAAAGCCAAATTCATGTTACTCTGTTCAGTCAGAAACATTTTGTGGCATACAGCATTCCTGGGAAGTGCTGTACTTTGTTTCGTTTTGGTTTTAGTTTTGCATTTAGAGTGCCTTATAATTGATGCCTATTTTAATAGCATTTCTTTTTAGCTTTTGGTTCGTATTTCCATTCACTGTTCGTATCTGTTACTTTCTATTAAAGCATTATCTGTTTACCACATGTACAAAAACTCTTTGAATAATATGCATTCCTAGTTTTCAGCCAAGTCGGGGATGTTAGTGATTGTACCAGCCCAAAGCACTTGGATAATCAGGGCCCTTCTTCCTTTTATAATCAATCATCAACATCAGAAAAAGCTACTTGTTTTATTTATATTCCCTTCCAAATCCGCTCTGGAACATGCAGTAACTGCACCAAACTTATTTTAGTAACAAATATCATTGGCAACTTTGGAATATATTTGATATTCCATTAGGATTTTTCTAAAAGGGGAAATAAACTATATATATATATGTATCTTACCCCCAATTCTTCCAACAGAATTTCTATAGGAAGCCATGGATGATGGCATAAGTTTGCCACATATTACATGATTTTAAATAATCCTCAAAATACCCAAGGAACTCTTAAAGAGTTTTGGTATGAGTATACTACTTTGGTTTAATTTTAGCTTCATGGATGTTCTGCATGGAAGGATTTTTGTTTTCCACATTTTCCCATTGCTAGCAGAGTGAAATCCAAGAGACCAAACATTTGCAAGCATTGTATTTGAGCACTTTTGTaaaaaacaaagaaaaagaaaaaaaagaaaatatatataatactaaaaaaaaGTATCTAGAAGGCTACCTCAGAATGAGACTCTCTAACCTACATCAGAACCAGAGAAGAATGTGCACTATGTGGGTCTGTTATCATTATTTTCTTTTAGTTTGTATCTTTTTGGAGATTTATCCAAGTGCCAGATTACTCAGTGCTATAATTTTCTTTTAGTTAAACAAAGGGGGTCAGACAGACATTGCATCATCCAGACATGCCTTGTTGGACATGTAGAATCCGATGGAGCACTGCACACCAGAATGATTGGCCAATGAGCAGCTTCTCTCCCTGAAACAATAACTGCCCATTTGGCAAAGGGAAAGATGACAATAATCAGAAGAAGAAAATGAATGGGATGCATACCATAGACGAACGAGGCGGAGACTATTGCGGGAATCTTACTGTTCAGGAGCTGTTCCTAGAACTAACTCCCTTACTGTCATTGATGTGCATTCCACTCTGTGCTTTTCTGTACAACCATTCAAGTTTTAATTTCCCAGGTGAACCATCTTTATCTGCCATTACCACAAGCTTTCAAGTTTCCAGTTATTTTCATCATCATAACCAGTACGGTGCTATTATTTACCTATGTACGTGTAGTTATGTATAATTTTGTAATTAGTTACAATGGTAAAAAAAATCAAAATATATAAAAAGTGATTTGTACAGAACTTTATTTTAGCTCTTTTTTAAAAATGATTTGCATGGTTAGAAAACGGCGAGGACAGCCAGGGGAGGGAAGGGCCTCTAGGGAACTTTGCACTTTCTATACCTTTGTACTATGCACTGCCCTATTGATTCTACACCCAATAATGATATTACTTGAACCCATCTGTAAGAAACTGCTTCGGAAATTCATTTGTGTGTATGTAAATAACACAACATAGAAACAGGAAGGGAAAAAAGTCTGCAGTAATGCACGTATTttttttctttcctgtttattttcggttttgctttaagtccttttatttttaattccctttttgtttttctttttgggttttggttCCTTTTGGGTTTATGGGTGCCCTGATACTCCAGCAGAGATCAGAAGGCTACAGATCCATTCTATCCATCCGTTATGTGGCTTTGCCATCCCAGCTTGGAGTGTCTTTACAAAGATAATAACAGTTGTGTTCTTTGCTCTCGTTTTGGATGCATAGACTGAAAAATTAAAACAAATAACTTGTAAAATGGCTTGTTAAAAAATACAATTACCTCTAATTAGTAGTACGCGTAAATGTTTTACAGAATGAAAGGCGTGCTTTTTATTTTCTTACTTCGTTACATTGGTGGCGAAAGAAGTCTGTATGAAAATCAGTTCTTTGCTGACACAAGTTCCATTTGTTACAAATGAATTCTAATAAAAATGTCAGTGTTATGCA 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