Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name PTPRDP1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:117719443-117722097  UCSC
Coordinates (T2T) chr5:118231815-118234469  UCSC
Coordinates (hg19) chr5:117055138-117057792  UCSC
Strand -
Parental Sequence NM_130393.3
Parental seq. overlap 663 bp
Parental seq. overlap (%) 8%
Genomic Region Intergenic
Retrocopy Summary PTPRDP1, located on chr5:117719443-117722097, is a retrocopy of the parental gene PTPRD. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTPRD
Full Name protein tyrosine phosphatase receptor type D
Also known as HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA
Coordinate chr9:8314246-10613002
Strand -
Gene summary The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular region, a single transmembrane segment and two tandem intracytoplasmic catalytic domains, and thus represents a receptor-type PTP. The extracellular region of this protein is composed of three Ig-like and eight fibronectin type III-like domains. Studies of the similar genes in chicken and fly suggest the role of this PTP is in promoting neurite growth, and regulating neurons axon guidance. Multiple alternatively spliced transcript variants of this gene have been reported. A related pseudogene has been identified on chromosome 5. [provided by RefSeq, Jan 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PTPRDP1
Bonobo Pan paniscus PTPRDP1
Gorilla Gorilla gorilla PTPRDP1
Orangutan Pongo abelii PTPRDP1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTPRDP1
CCATGCAATAATTTCAAAAATCACCTTGTTAATATTACACCATATAAATCCACAAGGTTGTACTTGCAGCCTATCCATGGAGTAGAAGTATCTGGTTACATTAATGCCAGTTTTATTGATGAGTAAAGACAATAGAAAGCTTACATTAGGGACCCTTGAAAGAGATCACTGAGGACTTCCAGTGGATGCTCTGGAAACACAATTTCACCAAGCTGTGTGAAATGGGCAGAGAAAAATGTCACCAATACTGGCCAGCAGAATAATCCACAAGATACCAGTACTTTGTTGTAGATCCTGTGGCTGAGTACAACATGCCATAGTTTATCACAAGGGAATTTAAAGTCATAGATGCCAAGGACAGCCAGTCCTGAACAGTGAGACAGCTCCAGTTCACTGACTGCCCAGATTAAAAAGTGCCAAAGTCTGGAAAAAGATTTATTGACTTAATTGGCCAAGTGCATAAAACAAAAGAGTACTGTGGTCAAGATGGACCCAGTTCAGTTGGAGTTGGCTGGACTGGTTGTTTCATTGTCATAGATGCCATGTTGGAAAGAATCAAGCATGAAAAAACTGTAGGTAATTATGCCTATGCAACTTTAATGAGAACCCAGAGGAATTACATGGTTCAAGCAGGAGACCAGTGTATCTCTGTCCATGATGCACTGTTAGAGGCAGTTACTTGTGTAAATACCAAAGTTCCAGCTAGAAACTTGTATGCCTATATTAGAAACTGACACAAATAGAGAGGGGACAGAATGTCATAGGAGTGGTGCTCAAATTTAAGCATCTAATCAGCTCAAAAGCTCACATCTCAGGTTTCCTCAGTGCCAATCTTCCATGCAATAATTTCTTTTTATATATATATAt
>NM_130393.3
GCTCTGAAAGTGTTCCAGCTGAAATTTCAGATCGGACAGACTCGCTGCGGCTCCGGAGGCAGTGATTCCAAGCTGCTCGCGCACGCTGCTGCCAAGCTGCAGGATGGTGCACGTAGCCAGGCTGCTGCTGCTGCTCCTCACTTTCTTCCTCCGCACGGATGCTGAGACACCTCCAAGGTTTACACGAACACCCGTTGATCAGACAGGGGTCTCTGGCGGAGTTGCCTCTTTCATCTGCCAAGCTACGGGAGACCCAAGACCTAAAATTGTCTGGAACAAAAAAGGAAAGAAAGTCAGCAATCAGAGATTTGAGGTAATAGAGTTTGACGATGGGTCTGGATCAGTTCTCAGAATACAACCCTTACGGACTCCGAGGGATGAGGCCATTTATGAATGTGTGGCCTCAAATAATGTGGGAGAAATAAGTGTATCCACCAGACTCACAGTTTTGCGGGAAGATCAAATTCCCAGGGGCTTCCCTACCATTGACATGGGCCCACAGTTGAAGGTGGTTGAGCGTACTCGCACGGCCACCATGCTTTGTGCAGCCAGTGGTAATCCGGATCCAGAAATCACTTGGTTTAAAGATTTCTTACCTGTGGACACAAGCAACAACAATGGTCGTATTAAGCAGTTACGATCAGAATCTATTGGAGCCCTTCAGATTGAGCAGAGTGAAGAGTCTGACCAAGGAAAATATGAGTGTGTTGCCACCAACAGCGCGGGCACTCGCTATTCCGCTCCTGCCAATTTATATGTCAGAGAGCTGCGAGAAGTTCGCCGTGTCCCACCAAGATTCTCTATCCCACCCACTAATCATGAAATCATGCCAGGCGGAAGCGTTAATATCACCTGTGTGGCCGTGGGGTCACCAATGCCTTATGTAAAGTGGATGTTGGGGGCAGAAGATCTGACACCTGAAGATGATATGCCAATAGGAAGAAATGTGCTAGAACTGAATGATGTAAGACAGTCAGCAAATTACACCTGTGTTGCTATGTCAACACTGGGTGTCATTGAAGCAATAGCACAGATCACTGTCAAAGCCTTACCCAAACCTCCAGGAACTCCTGTAGTGACCGAGAGCACAGCTACAAGCATCACACTGACGTGGGACTCTGGGAACCCTGAGCCTGTTTCTTATTACATAATTCAGCATAAACCTAAAAACTCTGAGGAACTTTACAAAGAAATTGATGGGGTGGCGACCACACGCTACAGTGTCGCTGGACTAAGTCCCTACTCGGATTATGAATTCAGGGTTGTTGCTGTCAATAACATTGGGCGGGGGCCTCCCAGCGAACCTGTGCTAACACAAACCTCAGAGCAAGCACCATCCAGTGCCCCGAGGGATGTCCAGGCACGAATGTTGAGTTCGACCACCATTTTGGTACAGTGGAAGGAACCTGAAGAGCCAAATGGACAGATCCAAGGATATAGAGTTTATTATACAATGGATCCCACTCAACATGTCAACAACTGGATGAAACACAATGTAGCTGACAGCCAAATCACTACTATTGGCAACTTAGTGCCCCAGAAAACATATTCTGTCAAAGTCCTGGCTTTTACCTCAATTGGAGATGGTCCCCTTTCAAGTGACATACAAGTCATCACTCAGACAGGAGTACCAGGGCAGCCACTAAACTTCAAAGCAGAACCTGAGTCTGAAACAAGTATTTTGCTCTCTTGGACACCTCCACGTTCAGATACCATTGCCAACTATGAACTGGTCTACAAAGATGGGGAGCATGGAGAGGAGCAACGAATTACCATTGAGCCAGGGACATCATATAGGCTGCAAGGACTGAAACCAAACAGCTTATACTATTTCCGTCTGGCTGCACGCTCCCCTCAAGGCCTGGGTGCTTCTACTGCAGAAATATCAGCTAGAACCATGCAGTCAACAGTGTTTGCAAAAAATTTTCATGTCAAAGCAGTAATGAAGACTTCCGTGTTGCTGTCTTGGGAGATTCCAGAGAATTATAACTCCGCCATGCCTTTCAAAATTCTTTATGATGATGGGAAAATGGTAGAAGAAGTGGATGGCCGAGCCACACAGAAGTTAATTGTCAACCTGAAGCCTGAGAAATCATATTCATTTGTGCTGACAAATCGTGGAAACAGTGCTGGTGGGCTGCAGCACAGGGTCACGGCAAAGACTGCACCAGATGTATTACGTACCAAGCCTGCCTTCATTGGGAAGACCAACTTGGATGGCATGATTACTGTGCAACTGCCTGAAGTACCTGCAAATGAGAATATAAAAGGTTACTACATAATAATTGTGCCTTTGAAGAAATCTCGCGGGAAATTTATCAAGCCATGGGAGAGTCCAGATGAAATGGAATTAGATGAGCTGCTTAAGGAGATATCTAGGAAGCGCAGAAGCATCCGTTATGGGAGAGAAGTTGAATTAAAGCCATATATTGCCGCTCACTTTGATGTCCTTCCCACTGAGTTCACCCTGGGGGATGACAAGCATTATGGTGGATTTACAAACAAGCAACTCCAAAGTGGTCAAGAATATGTCTTCTTTGTGTTAGCAGTAATGGAACATGCAGAGTCTAAGATGTATGCAACCAGCCCTTACTCCGACCCCGTGGTGTCAATGGATCTGGATCCGCAGCCAATCACGGATGAAGAAGAAGGCTTGATCTGGGTTGTAGGTCCTGTCCTTGCAGTGGTCTTTATCATCTGCATTGTCATTGCTATTCTTCTTTATAAAAGGAAGAGGGCAGAGTCCGACTCTAGAAAAAGCAGCATACCGAACAATAAGGAGATCCCTTCACACCACCCAACAGACCCTGTAGAACTGAGGCGCCTTAACTTTCAAACACCGGGTATGGCTAGCCATCCTCCAATACCCATCTTGGAACTTGCAGACCACATTGAAAGATTGAAAGCAAATGACAACTTGAAGTTTTCCCAGGAATATGAGTCAATTGACCCTGGCCAGCAGTTCACTTGGGAACATTCAAACTTGGAAGTAAACAAACCAAAGAATAGATACGCGAATGTAATCGCATATGATCATTCCCGGGTTCTCCTATCAGCTATAGAAGGGATCCCAGGAAGTGACTATGTGAATGCCAACTACATAGATGGGTATAGGAAGCAAAATGCCTATATTGCAACACAGGGATCTCTCCCCGAAACATTTGGGGACTTTTGGAGAATGATATGGGAACAACGGAGTGCCACAGTTGTCATGATGACAAAACTAGAAGAAAGATCAAGGGTGAAGTGTGACCAGTATTGGCCTAGCAGAGGCACAGAAACCCACGGACTCGTTCAAGTAACGCTGCTTGATACTGTGGAGCTGGCCACATATTGTGTTCGAACATTTGCACTTTACAAGAATGGTTCAAGTGAGAAGAGAGAAGTGAGACAATTCCAGTTCACCGCCTGGCCTGATCATGGTGTTCCAGAACACCCTACACCTTTTCTAGCTTTCTTACGTAGAGTCAAAACCTGTAACCCTCCCGATGCTGGTCCGATGGTTGTGCACTGCAGTGCGGGAGTTGGCCGGACTGGTTGCTTCATCGTCATAGATGCCATGTTAGAAAGAATAAAGCATGAAAAAACTGTAGATATTTATGGCCATGTAACTTTAATGAGAGCCCAGAGGAACTATATGGTTCAAACAGAAGACCAATACATCTTTATCCATGATGCACTGTTAGAAGCAGTGACTTGTGGAAATACCGAAGTGCCAGCTAGAAACTTGTATGCCTACATTCAGAAGCTGACACAAATAGAAACGGGAGAGAATGTCACAGGAATGGAGCTCGAATTTAAGCGTCTAGCCAGCTCAAAAGCTCACACCTCAAGGTTTATCAGTGCCAATCTTCCATGTAATAAATTCAAAAATCGCCTTGTTAATATTATGCCATATGAATCCACAAGGGTATGCCTGCAGCCTATCCGTGGAGTAGAAGGATCTGATTACATCAATGCCAGTTTTATTGATGGATACAGACAACAGAAAGCCTACATCGCTACCCAGGGGCCCTTGGCAGAGACCACTGAAGACTTCTGGCGGATGCTCTGGGAACACAATTCCACCATAGTTGTGATGCTCACCAAGCTGCGTGAAATGGGCAGAGAGAAATGTCACCAATACTGGCCAGCAGAACGGTCTGCAAGATACCAGTACTTTGTTGTAGATCCCATGGCTGAGTACAACATGCCACAGTATATCCTAAGGGAATTCAAGGTCACAGATGCCAGGGACGGCCAGTCCCGAACAGTAAGGCAGTTCCAGTTCACTGACTGGCCAGAGCAAGGAGTGCCAAAGTCCGGAGAAGGATTTATTGACTTCATCGGCCAAGTCCATAAAACAAAAGAACAGTTTGGCCAAGATGGACCCATTTCAGTCCATTGCAGCGCGGGCGTTGGAAGAACTGGAGTCTTCATAACGCTAAGCATTGTTTTGGAAAGAATGAGATATGAAGGAGTTGTAGATATCTTCCAGACTGTCAAAATGTTAAGAACACAACGACCAGCTATGGTACAGACAGAGGATCAATATCAGTTTTCCTATCGTGCCGCACTAGAGTACCTGGGCAGCTTTGACCACTATGCAACGTAGAAACCCCTGACCCATTCTGGATTTTTACTACAGGCCCTTCAATATCCATGGAGTCTCTTCTGAGCCATACAGGGCACTTGAGAAGTCCTTCTTAACTTCTAGCTAACAACTACTTAGTGGGACTATTACACACAAAACAAATTAAAAACAAATTATTCCAGGTGGACCAAGAATTCACAGTTTAATAATCTAACCTGAAAAATAATGAAGAGAATCCTGACTGATGAGGCATCTGAAGGATTTTATTTACAGATACCTCAAGGATTCAAAATCAAGGGAAGAAGAAATCACAGCAAAGAACCACCATCTTATTCAGGATTGCTTGAAAGGTGCAAGGAGAAATTGCCAGAATGCTGCAGTTCAGCACAAGATATGTGCTGGTGTGGCTTCTCACAATGAAACGGACTCTGCTTTGACATCGCCCCTTCCCACCATACTGCTCATAATAACATTTTAGGGGGAAAGGGGAGGGAATGTTTAAAAAGAAAGTCCTTGATTTAGTTTTTTAGTATTGTAAAGATACTGCTGACCTGTGCTTCATTTCTAACTGTGTAAACTTTTTTTTAACAAAATGTATCATTCGATAAAGTGAATTTTAAAAAAGTTACATAACTCTTCATTTTTTTATTTCCAAATCGTAGGTTTTTTTAAGCTGTAGAACTGTTATCTGTAATATCTTGCTGTAGAAATATCAAATCATTTGAAAATTTGCACATTTTTGTGCAAAACTCAATCTACAGTATCAGTCTCGTCAGATATATTAATTTTACACTTCAGTTTTGATTGGTGAGAAAGTACCCATTCTCTTCAAATAATCAAAGATAATTATTATTTTGTTTTGTTTTTGGAATCAACAGGGAGGCGCAAAGTATAAAGTTGCTGCTAACatatatacatatatatccatattttataagggtgtctatgtatatataGACAGTGTGTCCACACAAAAAATAGATACAGTTATCAGTCAGTCAGTTCTTCCATGATTTAGTTTTTTTAAACGTAGAAAAGCTATTGTAAACATCTCTTTCCATTTATTCTTAATTTTTTGACATATTGGTATTTCTTTAAAGGGAAATGAGGAATGCACATCAGTGATTGATTGTCAAACCTCACCCCCTGATTTCCTACCTAATCTACCCCCACCTAACCAATCAATCACATCCACAAATTGTTTTGTTTGTTTGTTAGTCAGGCTTCCAACAAAGTTCAATATTTCTAACACTCTAGTGCAATAAAAATTATTATTAAATAGCTAAGAGGTGTGCATGTGGGAAAGGTCAGTGCATATCCCTTTAGGAGGGGAGAATGTTGTAATATATCAGCTATCGAGTTGTTTAAAAAAAGTGTATTCAATCGTATATTGTCTATAGTATGTGCTATGAAATTTGCATTTATGATATGTAACAGGGGCAAAGCCAAATTCATGTTACTCTGTTCAGTCAGAAACATTTTGTGGCATACAGCATTCCTGGGAAGTGCTGTACTTTGTTTCGTTTTGGTTTTAGTTTTGCATTTAGAGTGCCTTATAATTGATGCCTATTTTAATAGCATTTCTTTTTAGCTTTTGGTTCGTATTTCCATTCACTGTTCGTATCTGTTACTTTCTATTAAAGCATTATCTGTTTACCACATGTACAAAAACTCTTTGAATAATATGCATTCCTAGTTTTCAGCCAAGTCGGGGATGTTAGTGATTGTACCAGCCCAAAGCACTTGGATAATCAGGGCCCTTCTTCCTTTTATAATCAATCATCAACATCAGAAAAAGCTACTTGTTTTATTTATATTCCCTTCCAAATCCGCTCTGGAACATGCAGTAACTGCACCAAACTTATTTTAGTAACAAATATCATTGGCAACTTTGGAATATATTTGATATTCCATTAGGATTTTTCTAAAAGGGGAAATAAACTATATATATATATGTATCTTACCCCCAATTCTTCCAACAGAATTTCTATAGGAAGCCATGGATGATGGCATAAGTTTGCCACATATTACATGATTTTAAATAATCCTCAAAATACCCAAGGAACTCTTAAAGAGTTTTGGTATGAGTATACTACTTTGGTTTAATTTTAGCTTCATGGATGTTCTGCATGGAAGGATTTTTGTTTTCCACATTTTCCCATTGCTAGCAGAGTGAAATCCAAGAGACCAAACATTTGCAAGCATTGTATTTGAGCACTTTTGTaaaaaacaaagaaaaagaaaaaaaagaaaatatatataatactaaaaaaaaGTATCTAGAAGGCTACCTCAGAATGAGACTCTCTAACCTACATCAGAACCAGAGAAGAATGTGCACTATGTGGGTCTGTTATCATTATTTTCTTTTAGTTTGTATCTTTTTGGAGATTTATCCAAGTGCCAGATTACTCAGTGCTATAATTTTCTTTTAGTTAAACAAAGGGGGTCAGACAGACATTGCATCATCCAGACATGCCTTGTTGGACATGTAGAATCCGATGGAGCACTGCACACCAGAATGATTGGCCAATGAGCAGCTTCTCTCCCTGAAACAATAACTGCCCATTTGGCAAAGGGAAAGATGACAATAATCAGAAGAAGAAAATGAATGGGATGCATACCATAGACGAACGAGGCGGAGACTATTGCGGGAATCTTACTGTTCAGGAGCTGTTCCTAGAACTAACTCCCTTACTGTCATTGATGTGCATTCCACTCTGTGCTTTTCTGTACAACCATTCAAGTTTTAATTTCCCAGGTGAACCATCTTTATCTGCCATTACCACAAGCTTTCAAGTTTCCAGTTATTTTCATCATCATAACCAGTACGGTGCTATTATTTACCTATGTACGTGTAGTTATGTATAATTTTGTAATTAGTTACAATGGTAAAAAAAATCAAAATATATAAAAAGTGATTTGTACAGAACTTTATTTTAGCTCTTTTTTAAAAATGATTTGCATGGTTAGAAAACGGCGAGGACAGCCAGGGGAGGGAAGGGCCTCTAGGGAACTTTGCACTTTCTATACCTTTGTACTATGCACTGCCCTATTGATTCTACACCCAATAATGATATTACTTGAACCCATCTGTAAGAAACTGCTTCGGAAATTCATTTGTGTGTATGTAAATAACACAACATAGAAACAGGAAGGGAAAAAAGTCTGCAGTAATGCACGTATTttttttctttcctgtttattttcggttttgctttaagtccttttatttttaattccctttttgtttttctttttgggttttggttCCTTTTGGGTTTATGGGTGCCCTGATACTCCAGCAGAGATCAGAAGGCTACAGATCCATTCTATCCATCCGTTATGTGGCTTTGCCATCCCAGCTTGGAGTGTCTTTACAAAGATAATAACAGTTGTGTTCTTTGCTCTCGTTTTGGATGCATAGACTGAAAAATTAAAACAAATAACTTGTAAAATGGCTTGTTAAAAAATACAATTACCTCTAATTAGTAGTACGCGTAAATGTTTTACAGAATGAAAGGCGTGCTTTTTATTTTCTTACTTCGTTACATTGGTGGCGAAAGAAGTCTGTATGAAAATCAGTTCTTTGCTGACACAAGTTCCATTTGTTACAAATGAATTCTAATAAAAATGTCAGTGTTATGCA

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