Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NANPP2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:119009833-119011172  UCSC
Coordinates (T2T) chr5:119522898-119524237  UCSC
Coordinates (hg19) chr5:118345528-118346867  UCSC
Strand +
Parental Sequence NM_152667.3
Parental seq. overlap 1199 bp
Parental seq. overlap (%) 31.4%
Genomic Region Intergenic
Retrocopy Summary NANPP2, located on chr5:119009833-119011172, is a retrocopy of the parental gene NANP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NANP
Full Name N-acetylneuraminic acid phosphatase
Also known as C20orf147|HDHD4|dJ694B14.3
Coordinate chr20:25612935-25624014
Strand -
Gene summary Enables N-acylneuraminate-9-phosphatase activity. Involved in N-acetylneuraminate biosynthetic process. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NANPP1
Bonobo Pan paniscus NANPP1
Gorilla Gorilla gorilla NANPP1
Orangutan Pongo abelii NANPP2
Gibbon Nomascus leucogenys LOC115835560P1
Green monkey Chlorocebus sabaeus NANPP3
Rhesus Macaca mulatta NANPP1
Baboon Papio anubis LOC101024220P1
Marmoset Callithrix jacchus NANPP1
Crab-eating macaque Macaca fascicularis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NANPP2
GGCTATGGGGATGAGCCACATGCTGGCCTCTTTCTTTGACCTGGACAGCATGCTCATCGACATGGCCAGGGTGAGCAGGAGAGACCTGTTGGAGGTGATAAAGCTCTTACAATCAAAATATCATTTTAAGAAAAGGCTGAAATCATCTGTGATAAAGTTCAAGTTAAACTCAGGAAGGAATGTTTTCATCCTTACAGTACATGCATTACTGATCTAAGGACTTCAATTGGGAAGAAGCAGTCCAGGAAACAAAAGATGGTGCCGCCAATAGAAAATTGACTGGAGAATGTCACTTCCTTTGGAAATCTACACGTTTACAGCTTATGACACTAGCAGAAAATATCAAAGTCATGCTCACCGAACTTTGAAAGAAGGTCTGCCTATTTTTATTAAGGAATGGGGACAGACAGATCCAGAGGGAGAAGATTGAGCCTTGTGCCTGTCAGTCGTATTTCCACGCTATTGGAGGTGGAGAGCAGAGAGAGAAGCCAGCACCATCCATATTTTATTACTGCTGCAATCTTCTCAAAGTACAACCTGGGGACTGTATGATGGTCAGTGATACGTTAGAAACCGACGTCCAAGGAGGCCTCAATGCAGGACTGAAAGCAACAGTCTGGATCAATAAAAATGGAATAGTGCCACTGAAGTCCTCCCCCCTTCTGCATTACATGGTTTCTTCTGTGCTGGAGTTACCTGCTCTCTTACAAAAAGTATACACCACAAAGTCAGGATGTCCGCTTAAAGCACATAAAAGGGCATGATTATGAACTTCAGAATCAATGTGCAGAGTTTGAACTAAGAAAAGTTAGGGCATTCCACTTACTATGGTCCAGAATAATTTTACTTATGATTTAATGACCAATATTGCAAAGGTCCTCCCAACCCTATTGCTTTTAAGTTCAACCATTGACTGGTATTTGTATCTGAAAATTCAGATTGCATTAATACAAAGTAGTATAGCCCAGAAAATTTGAGGAAATATATTATTTGTTAGTCTGTAACAGGAGATTTTTAAAATTAATTTTATTAATCTTTTAGTACCTTGACTGCATGATACCAAGCAGGCTAGCTTACACATGGATACACAAATGCCAGGTTTTTCTTCTGGCTTAAAAATAGATATTTTTTAAAAATAGATTTTCTAAAACACATAATAGATTTATCACAGCAACTGAATCTGGTTAATATGAAATAAGTTCTAAGTCACATGCAAATCAAGGTATTTCATCATGAAATTATTTTGCATGTTTTTAAAACATAAAACATATTTTTGCCTATTTTGGAGGTATACTTCCTTTTCTATTATGAATCTGATTTTTTTGCATGACTTTTTTTTT
>NM_152667.3
GCAGTCCGCCTTGCGCATGCGCAGGCGGCGGTGGCAAGGCTACGGTTCGCGCCAGCGGCCGGCGCTATGGGGCTGAGCCGCGTGCGGGCGGTTTTCTTTGACTTGGACAACACTCTCATCGACACGGCCGGGGCGAGCAGGAGAGGCATGTTGGAGGTGATAAAACTCTTACAATCAAAATACCATTATAAAGAAGAGGCTGAAATCATCTGTGATAAAGTTCAAGTTAAACTCAGCAAGGAATGTTTTCATCCTTACAATACATGCATTACTGATTTAAGGACTTCACATTGGGAAGAAGCAATCCAGGAAACAAAAGGTGGTGCAGCCAATAGAAAATTGGCTGAAGAATGTTATTTCCTTTGGAAATCTACACGTTTACAGCATATGACACTAGCAGAAGACGTCAAAGCCATGCTTACTGAACTTCGAAAGGAGGTCCGCCTACTTCTATTAACGAATGGGGACAGACAGACCCAGAGGGAGAAGATTGAGGCTTGTGCCTGTCAGTCCTATTTTGACGCTGTTGTTGTAGGTGGAGAGCAGAGAGAGGAGAAACCAGCACCGTCCATATTTTATTACTGCTGCAATCTTCTCGGAGTACAACCTGGGGACTGTGTGATGGTCGGTGACACATTAGAAACCGACATCCAAGGAGGCCTCAATGCAGGAttgaaagcaacagtctggatcaataaaaatggaatagtgccactgaagtcctccccagttccgcattacatggtttCTTCTGTGCTAGAGTTACCTGCTCTCTTACAAAGTATAGACTGCAAAGTCAGTATGTCCACTTAAAGCACATAAAAGGGCATGATTATGAATGTTAGAATCAATTTGCTGAGTATGAAATAAGAAAAGTTAGGGCACTCCACTTATGATAATCCAGCTCTAAGAATAATTTTACTTATGATTTAATGGCCAATATTTTGAAGGTCTTCCCAACCCTATTGCTTCTAAGTTGTAACAACCAACCATTGAGTGGTACTTATATCTGAAAATTCAGATTGCATGAATTCAGGTCAGTAGTATAGCCCAGAAAATTTAAGGAAATATATTATTTGTTAGTCTGTATCTGGAGCTTTTTAAAATTATGTTATTAATCTTTTAGTATCTTGGCTGCATAATGCCAAGCAGGATTGCTTTACACATGGATGCACAAATGTAAGGTTTATCTTCTGGCTTAAAAATAGATATTTTTAAAAAATAGATTTTCTAAAACACAGATTTATGAAAGCAAGTGAATCTGGTTAATATGAAATAAGTACTAAGTCACATGCAAATCAAGGTATTATATAGTGAAATTATTTTGCATATTTTGAAAACATAAACCATAGTTTTTGCCTACTTTGGATGTATACTTTCTTTTATGAACCTGATTTTTCTGTATGACATTTTTTTTTTTTTCAGAGGGCAGGGAGCAATTTTTCTATGGCATGTGACAGATTCCTCCAGTTAGAAAAAGCTGTTAAAATCAACACATGGTGCTCCTTTACCGTGACATTTTCTCACCTGTGCACAGTGAGCCGGTAGCTTCCTTTTAGTCTTCACCTCTCAAGGAAATGTTTTTACTGTCTTTTCCCAGACACACAGTGGGGTTGAGGGAGCTAGGCTGTTTTGCTAGAGATAATTGCAAGGCACGTGGCACTAAAAGTCATTTTTCTTCTGTGGATCCATAAGAGGAACATTTCCTCAGTGTAGCCTAACAATGCAGCCCCCAATCTGTTCCtttttttttttgaaatgggatctctgtcgcccaggttggagtgccatggcaccatctcggctcactgcaacctctgcctcctgagctcaagtgatcctcccacctcagcctcccaagggtgtgtgtgactacaagtacacactaccacgcccagctaatgtgtgtttttgtagagatgggattttgccatgttgcccaggctggtctcgaattcctggattcaagtgatcctcccacctcagcctcctaaagtcctaggattataggcatgagccactgtgcctggccCCCTCATCTGATAGAAAATTAGATTTTGCTATGAGCCATTTCCTGAGGGCCAATTTAATACTCGTGTGACTCTTCTTAGAGTTACCATCTGCCTTAAATTTCCTCTGTTTTTCACATTCTTGGAAATATATCATTGTTTTGCAAATTTCTATATCTAATTCAGGGTTTACCAGGAGCTTAATAATTAATGGCTACATAGCAAGGCATCGTCTTGGAACCGGAGAATTTTCTCTAGACTATTAGGCTAGACAGTCTCATGATTATACTAACCAAACCTGGAGTAAAGTGGTTGAAAAAAAAGAAAGTATAAAGGGGCTTATTAAAGTGGTTAATAAATATGATTTAGGTTGGTTTTTGATATGTTTTTCTTCCAACTGTTATATAAGAAACTACTAATGTAAAATAGTAGGCTATATGTTGGGATGTGTATAGCTATGTCTTCAAGACTAATACTCAGAGAATCAAATTGTAGATTGTACCTATCTGTGAGCCTATTTCTTTAGCCAGTTTTCTGTCTACTGCCAAGAAACAGAATTCTCTGCCTCATGCAAATGCCCTTTCGTGTTTACTTTTCGCTCTAGATTTTTAAAAATGTGATTGTGCCCTTGACTGTACCAAAGTGCTGTTGCTATAACAGTGAACATTTGTGAACAGAGGATGTTTGTAGTTTCAAATGCAGTACCCATATGACCTTGATCATATTTTAGCTATTTAAAAATTAAGTTGGAGGATTTTGGCAGAAGTAGTCACATGCATGATTGCTCTGATAGATTGGTTGGCGTGTGCTGCAGGGGGCTTGTCCTTTTAACTCTCCCACAGGATGGATGTAGGCAGTGTCACATTCATTATGCTGAGAGTGAAGGTTCATCACTCCTGTATCATGGTAGCAAATCTCAACAGGATAGCTTCTAGGATGTTAAGTGAGCAGTTCTCCAGCAGAAATGATGTAGAAGGAAAAAATTGAATAATTAAATTTCCTTGTCTTCACAGTTTGTATTCTACAGAGTACAGTAATGTATTACATTCCATTTGCACCCTTCCTTAGGGAAGAACTTTGTGGTTATCTACCTTCTGAGTGGAATGTTACAGAAAATATTTTAAAATATTGGAATAAACCTATGATTTTATTAATATTTTTTGTTTTAGAATAATATTCCTTAAAATTATGGGTGATGTTTTGTCATCTTTATTTTTTTTCAAAGTTTCCCTGTAGTGGCCTTCTCACACAAAGCCAGAGGCCCTCCCTAACACTGCTTACAGAGGTGGGCCTAGAACAGACATGAATGGACACTGCACCTGGAATACCAGCACCTGGTGGGGAGGTTTGGTTCCATGTGCACCTCCACATACAAGGCACGAACATCTCAGATCTGGGAGTGCCCAGGACCCAGTGGATGCTCAGTATTGTAGGAAAGCAGGTCTTTACCAAAGTTCTTGGTTTATTGCTTTCAAACTTCTTTGCAACCTTCAGTAAGAAACATTTTCTATCATAACCTCTTTAACACATTTATAGTGTTAGATAACACTGTAACtatatataaatataaatataacacatgtatataaataaatataaatataacattttatagtataacattaatatgtgtatGGGATCCAGTTTTATATGTTTAATTTTCATAAAACATTCTTGTTACGTGTGATGATATTTTTCATTCCATTCTTTTTTGAATTAGGGAATAtattcattgttgaacaagtactacttgtagtacacaagtcaaaaaaataaaagggtgaatggtgaaaa

Publications

PMID - Link Title