Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SMIM30P8
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:125074670-125075680  UCSC
Coordinates (T2T) chr5:125590995-125592005  UCSC
Coordinates (hg19) chr5:124410363-124411373  UCSC
Strand +
Parental Sequence NM_001352688.2
Parental seq. overlap 921 bp
Parental seq. overlap (%) 89.2%
Genomic Region Intergenic
Retrocopy Summary SMIM30P8, located on chr5:125074670-125075680, is a retrocopy of the parental gene SMIM30. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SMIM30
Full Name small integral membrane protein 30
Also known as LINC00998
Coordinate chr7:113116718-113118554
Strand -
Gene summary Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC463665P2
Bonobo Pan paniscus SMIM30P2
Gorilla Gorilla gorilla SMIM30P2
Orangutan Pongo abelii LOC100438631P2
Gibbon Nomascus leucogenys SMIM30P1
Green monkey Chlorocebus sabaeus LOC103227395P6
Crab-eating macaque Macaca fascicularis LOC102140364P3
Rhesus Macaca mulatta SMIM30P3
Baboon Papio anubis SMIM30P1
Golden snub-nosed monkey Rhinopithecus roxellana SMIM30P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SMIM30P8
GATTCCTGTAATGGCGGCTTCCTGGAAGGTAGTGTCATGTGGAACCTCTTAATCTCAGCACCTGGAGCTCCAGGAAGGGGAATTTCAAGTCAGATAGAATTCTATATATACCATTTCTTTGGAACCTTCAGCCCTCAAGATTCCAACATCATTACCTCAGTTTCAACACAGTTGTCCTTAGTCCTCATATCACTGCTTTTGGTGCTGCCTGTTGTCAAAGTGGTAGAAGCCAGTGATGCAATTGTCCTCTTGTTAGGTGTGGTTCTCAGCATTACAGGCATTTGTGCCTGCTTGGGGGTACATGCACGAAAAAGAAAATGGACAGATGTGACCTTGAAAGGCCTACTGAATCAAACCTCACCCTGAAAACCTTTGTGCTATAGAGGCTAAACCTGAGCTTTGGTATCTGAAAGTTTCCAAGAATCAGTAAATAAGGGAATTTTACATTTTTCATTGTTTCCATGAAATGGTAACAAACATACATAAATAAATTGAAAAAAATGTTTTCTTTACAATAAATAATGCACTGAAAAATACAGCCTATAATTTGTATTTGCTAGTTAGAAAGGAGGTCAAAGAAGTAAGATGGCTGAAATTTACGTAAGTAATATTTCATAGTTTTAGAATTCTCCAAGCATGCAAAATAGCAAGAAGGAAGTTCTTGCCCAGAATCTTAGGAAATCACCAATGTTCAGTTATAATCACTGTCTCCTGGATCATTGAAGAGTCTTTTCTGCATCTTTTTATAAGGTTTTTGTTTTGTTGTCTCCCAGGTTAATATTGTATTTAGATATCAGAGAGTCAGCCAAAAAGGGAAGCTTTTATCTCTGGGGAAAAATGTTTAGAAAAATGTATTCGGTGTATCTGATACTGAAATGCAGAAAAAAATTTAATGTTAAAAAAAACTATAGACATTGACATGGAAAAGAGATTTAATGTTAAGAAAAAAACTATATTAACTGAGTAACATCCTCCTAATGAGAAGTACTATATTAAATATAAACCCATTAT
>NM_001352688.2
ATTCCTGTAATGGCTGCTTCCTAGAAGGTCGTGTCACGTGGAACCTCTTAATCTCAGCATCCGGAGCTCCAGGAAGGGAAAATTTCAAGTCAGATAGAATTCTATATATACCATTTCTTTGGAACCTTCAGCCCTCAAGATTCCAACATCATGACCTCAGTTTCAACACAGTTGTCCTTAGTCCTCATGTCACTGCTTTTGGTGCTGCCTGTTGTGGAAGCAGTAGAAGCCGGTGATGCAATCGCCCTTTTGTTAGGTGTGGTTCTCAGCATTACAGGCATTTGTGCCTGCTTGGGGGTATATGCACGAAAAAGAAATGGACAGATGTGACTTTGAAAGGCCTACTGAGTCAAACCTCACCCTGAAAACCTTTGCGCTTTAGAGGCTAAACCTGAGATTTGGTGTGTGAAAGGTTCCAAGAATCAGTAAATAAGGGAGTTTCACATTTTTCATTGTTTCCATGAAATGGCAACAAACATACATTTATAAATTGAAAAAAAAATGTTTTCTTTACAACAAATAATGCACAGAAAAATGCAGCCTATAATTTGCTAGTTAGGTAGTCAAAGAAGTAAGATGGCTGAAATTTACATAAGTAATATTTCATAATCTTAGAATTCTCTCAAAGCATGTGAAATAGGAAGAAGGAAGTTCTTGCCCAGAATCTTAGGAAATCACCACTGTTCGGTTATAATCACTGCCTCCTGAATCGTTGAGGAGTCTTTTAAATTAGATTTTTGTTTTGTTGTCTCCCAAGTTAATATTATATTTAGATATCAGAGAGTCAGGCAAAAAGGAAAACTTTTATCTCTAGGGAAAAAACATTTAGAAAAATGTATTCAGTGTATCTAATACTGAAATGCGGAAAAAAATTTAATGTTAAAAAAAAACTATAGACATTGACATGGAAAAGAGATTTAATGTTTTGAAAAAAAACTTTATATTAACTGAGTAACATCCTCCTGATGAGAAGTACTATATTAAATATAAACCCATTATGTTATAAGTTAA

Publications

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