Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC2A3P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:168552557-168553653  UCSC
Coordinates (T2T) chr5:169087339-169088435  UCSC
Coordinates (hg19) chr5:167979562-167980658  UCSC
Strand -
Parental Sequence NM_153449.4
Parental seq. overlap 906 bp
Parental seq. overlap (%) 25.9%
Genomic Region Intragenic (PANK3)
Retrocopy Summary SLC2A3P1, located on chr5:168552557-168553653, is a retrocopy of the parental gene SLC2A14. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC2A14
Full Name solute carrier family 2 member 14
Also known as GLUT14|SLC2A3P3
Coordinate chr12:7812514-7891196
Strand -
Gene summary Members of the glucose transporter (GLUT) family, including SLC2A14, are highly conserved integral membrane proteins that transport hexoses such as glucose and fructose into all mammalian cells. GLUTs show tissue and cell-type specific expression (Wu and Freeze, 2002 [PubMed 12504846]).[supplied by OMIM, Mar 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC2A14P2
Bonobo Pan paniscus SLC2A14P2
Gorilla Gorilla gorilla SLC2A14P2
Orangutan Pongo abelii LOC112135750P1
Gibbon Nomascus leucogenys LOC100593144P1
Green monkey Chlorocebus sabaeus SLC2A3P3
Baboon Papio anubis LOC101016467P3
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC2A3P1
TCTTTTCAGTTTGGCTACAACATTGGAGTCATCAGTGCTCCTGAGACAGTCATACAGGACTTTCTCAGTTACACTTTGAAAGAGAGGTCAGAAGACTCTCCCTCTGAGGTTTTGCTCATGTCCCCCTGGCCCTTGTCTGTGGCCATCTTCCCCAATGGTGATATGATTGGCTCCTTTCTGTTGCACTCTTTGTCAACCACTTTGGCAGGTGCAGTTCAATGCTTATCATAATTTGTTGGCTATTACTGGTTGCCTTATGGGATTCTGCAGACAAGCTGAGTTGGTTGAAATGCTGATCCTGGGCCACTAGATTACTGGCTTGTAATGCGGACTCTGCACAAGTTTTGTGCCCATGTACATTGGAGAGATCTCGCCTACTCCCCTTTGGGGTACCTTTAGTGCTCTCAACCAGCTGGACGTCGTTGGTATTCTGGAGATCCAGATCTTTGGTCTGGAGTTCATCTTGGGGTCTGAAGAGCTATGCCCAGTGATACTGGGCTTTACCATCCTTCCAGCTGTCCTATAAAGTGTAGCCCTTCCATTTTGCCCTGGAAGTCGTAAGTTTTTGCTCATTAACAGAAAGGAAGAGTACTAATGAGATCCTTCAGCAATTGTAGGGGACTCAGGATGTGTCCCAGGACATCTAGGAGATAAGAGTGCTAGGATGATACAAGAAAAGCAAGTCACTACACTGGCGCTCTTTAGAGTACCCAGCTACCAACAACCCACTGTCATTTCCATCATGCTCCAGCTCTCTCAGTAGCTCTCTGGAATCAATGTTGTCTTCTATTACTCAATGAGAATCTTCAAGGATGCAGGTGTTGAGAAGCCAATCTATAGATTAGTGCAGGAGTGGTTAATATTATCTTCTTGACTGTAGTCTCTCTGTTTGTGGTTGAAAGGGCAGGAAGGACTTTACATATGATAGGTCTTGAGGCATGGCGTTTTGTTCTGTCCTCATGATTGTTTCTTTGTTATTAAAGGATGAGTATGGTGGGATGAGCTTTGTCTGTAGTGGGGCTATCTTGGTCTTTGTGGCCTTCTCTGAAGTTGGACCAGACTCCGTTCCCTGGAATACTGTGGCCACACTCTTCAGT
>NM_153449.4
GTTAGTGGGTCCCAACGGCTGCAGGCGGGGCCGGCGGGGGCGCAGCGGCCCGGGAGgaagcagtaccttgaagagaaattggagagggagtcaattcctaggatagcagagagatggacaacagacAGAATagatggagtttcacaatggtggccatgtgtctggaattggtgggttcttggtctcactgacttcaagaatgaagccgcacaccctcgcaGTCACCCCAGCTCTGATCTTTGCCATCACAGTTGCTACAATCGGCTCTTTCCAGTTTGGCTACAACACTGGGGTCATCAATGCTCCTGAGACGATCATAAAGGAATTTATCAATAAAACTTTGACGGACAAGGCAAATGCCCCTCCCTCTGAGGTGCTGCTCACGAATCTCTGGTCCTTGTCTGTGGCCATATTTTCCGTCGGGGGTATGATCGGCTCCTTTTCCGTCGGACTCTTTGTTAACCGCTTTGGCAGGCGCAATTCAATGCTGATTGTCAACCTGTTGGCTGCCACTGGTGGCTGCCTTATGGGACTGTGTAAAATAGCTGAGTCAGTTGAAATGCTGATCCTGGGCCGCTTGGTTATTGGCCTCTTCTGCGGACTCTGCACAGGTTTTGTGCCCATGTACATTGGAGAGATCTCGCCTACTGCCCTGAGGGGTGCCTTTGGCACTCTCAACCAGCTGGGCATAGTTATTGGAATTCTGGTGGCCCAGATCTTTGGTCTGGAACTCATCCTTGGGTCTGAAGAGCTATGGCCGGTGCTATTAGGCTTTACCATCCTTCCAGCTATCCTGCAAAGTGCAGCCCTTCCATGTTGCCCTGAAAGTCCCAGATTTTTGCTCATTAACAGAAAAAAAGAGGAGAATGCTACGCGGATCCTCCAGCGGTTGTGGGGCACCCAGGATGTATCCCAAGACATCCAGGAGATGAAAGATGAGAGTGCAAGGATGTCACAAGAAAAGCAAGTCACCGTGCTGGAGCTCTTTAGAGTGTCCAGCTACCGACAGCCCATCATCATTTCCATTGTGCTCCAGCTCTCTCAGCAGCTCTCTGGGATCAATGCTGTGTTCTATTACTCAACAGGAATCTTCAAGGATGCAGGTGTTCAACAGCCCATCTATGCCACCATCAGCGCGGGTGTGGTTAATACTATCTTCACTTTACTTTCTCTATTTCTGGTGGAAAGGGCAGGAAGAAGGACTCTGCATATGATAGGCCTTGGAGGGATGGCTTTTTGTTCCACGCTCATGACTGTTTCTTTGTTATTAAAGAATCACTATAATGGGATGAGCTTTGTCTGTATTGGGGCTATCTTGGTCTTTGTGGCCTGTTTTGAAATTGGACCAGGCCCCATTCCCTGGTTTATTGTGGCCGAACTCTTCAGCCAGGGCCCCCGCCCAGCTGCGATGGCAGTGGCCGGCTGCTCCAACTGGACCTCCAACTTCCTAGTCGGATTGCTCTTCCCCTCTGCTGCTTACTATTTAGGAGCCTACGTTTTTATTATCTTCACCGGCTTCCTCATTACCTTCTTGGCCTTTACCTTCTTCAAAGTCCCTGAGACCCGTGGCAGGACTTTTGAGGATATCACACGGGCCTTTGAAGGGCAGGCACACGGTGCAGATAGATCTGGGAAGGACGGCGTCATGGGGATGAACAGCATCGAGCCTGCTAAGGAGACCACCACCAATGTCTAAGTCATGCCTCCTTCCACCTCCCTCCCGGCATGGGAAAGCCACCTCTCCCTCAACAAGGGAGAGACTTTATCAGGATGAACCCAGGACTGCTTCTGAATGCTGCTACTTGATTTCTTTCTCATCCCACGCACTCCATGAGCACCCCAAGGCTGCAGTTTGTTGGATCTTCAATGGCTTTTTAAATTTTATTTCCTGGACATCCTCTTCTGCTTAGGAGAGACCGAGTGAACCTACCTTCATTTCAGGAGGGATTGGCCGCTTGGCACATGACAACTTTGCCAGCTTTTCCTCCCTTGGGTTCTGATATTGCCGCACTAGAGGATATAGGAGAGGAAAAGTAAGGTGCAGTTGCCCCAACCTCAGACTTACCAGGAAGCAGATACATATGAGTGTGGAAGCCGGAGGGTGTTTATGTAAGAGCACCTTCCTCACTTCCATACAGCTCTACGCGGCAAATTAACTTGAGTTTTATTTATCTTATCCTCTGGTTTAATTACATAAATATTTATTTTTTAAGTGTAATTTTGCCAAATAATAAAAACAGAAGGAAATTGAGATTAGAGGGAGGTGTTTAAAGAGAGGTTATAGAGTAAAAGATTTGATGCTGGAGAGGTTAAGGTGCAATAAGAATTCAGGGAGAAATGTTGTTCATTATTGGAGGGTAAATGATGTGGTGCCTGAGGTCTGTACATTACCTCTTAACAATTTCTGTCCTTCAGATGGAAACTCTTTGATTTCTCAGAAAAGTTGTATGCCTATTTAATAAAGCTACTCATTTCCTTTGGAACTTTATCTTTAAGATAATAGTTTACATGTAGTAGTACTTGAAATCTAGGATTATTAACTAATATGGGCATTGTAGTTAATGGCGGTTGATGGGTTCTAATTTTGGATGGAGTCCAGGGAAGAGAAAGTGATTTCTAGAAAGCCTGTTCCCCTCACTGGACGAAATAACTCCTTGTAGTAGTCTCATTACTTTTGAAGTAATCCCGCCACCTATCTAGTGGGAGAGCCATCCAAATGAGAAACCTAAAATAATTGGTTCTTGGTAGAGATTCATTATTTCTCCACTTTGTTCTTTAGGAGATTTTAGGTGTTGATTTTCTGTTTTATTTTAACTCATACCTTTAAAGGAATTCCCCAAAGAATGTTTACAGCAAACTTGGAATTTGTAACCTCAGCTCTGGGAGAGGATTTTTTTCTGAGCGATTATTATCTAAAGTGTGTTGTTGCTTTAGGCTCACGGCACGCTTGCGTATGTCTGTTACCATGTCACTGTGGTCCTATGCCGAATGCCCTCAGGGGACTTGAATCTTTCCAATAAACCAGGTTTAGACAGTATGAGTCAATGTGCAGTGCAGCCCACACTTGAGAGGATGAATGTATGTGCACTGTCACTTTGCTCTGGGTGGAAGTATGTTATTGTTGACTTATTTTCTCTGTGTTTGTTCCTACAGCCCCTTTTTCATATGTTGCTCAGTCTCCCTTTCCCTTCTTGGTGCTTACACATCTCAGACCCTTTAGCCAAACCCTTGCCAGTGACAGTATTTTGGTTCTCAGTTCTCACTGTTCCCTCTGCTCCTGGAGCCTTTGAATAAAAATGCACGTAGCTATGGAGTGGGGTTTAGCTGGAAAGGTGGCCTTCCAACTTCACGTCAACTTCTGGCTCCTCAGTTTGGCAGTAAGGCAGGGAAGTTGTTTTCCTATTTCTCACTGAGAAGATTGTGAATATTTCCATATGGATTTTCCATTAttgtttgtttgattctttgtttTAAAATAAAAATTCTGAATGTACATGA

Publications

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