Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KRT18P41
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:170140603-170141987  UCSC
Coordinates (T2T) chr5:170679340-170680724  UCSC
Coordinates (hg19) chr5:169567607-169568991  UCSC
Strand -
Parental Sequence NM_000224.3
Parental seq. overlap 1247 bp
Parental seq. overlap (%) 87.9%
Genomic Region Intergenic
Retrocopy Summary KRT18P41, located on chr5:170140603-170141987, is a retrocopy of the parental gene KRT18. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KRT18
Full Name keratin 18
Also known as CK-18|CYK18|K18
Coordinate chr12:52948855-52952906
Strand +
Gene summary KRT18 encodes the type I intermediate filament chain keratin 18. Keratin 18, together with its filament partner keratin 8, are perhaps the most commonly found members of the intermediate filament gene family. They are expressed in single layer epithelial tissues of the body. Mutations in this gene have been linked to cryptogenic cirrhosis. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KRT18P22
Bonobo Pan paniscus KRT18P23
Gorilla Gorilla gorilla KRT18P24
Orangutan Pongo abelii KRT18P24
Gibbon Nomascus leucogenys KRT18P7
Green monkey Chlorocebus sabaeus KRT18P55
Crab-eating macaque Macaca fascicularis KRT18P28
Rhesus Macaca mulatta KRT18P28
Baboon Papio anubis KRT18P20
Golden snub-nosed monkey Rhinopithecus roxellana KRT18P16
Marmoset Callithrix jacchus KRT18P13
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KRT18P41
GCAAAGCCTGAGTGCTGTCCTCTCAATCTCCTTCCCAGACAGCACGAGATTCACCACTCGCTTCACCTTCTCCACCAACTACCAGTCCCTAGGCTCCGTTCAGCCTCCCAGCTATGGTGTCCAGCTGGTCAGCAGCGCAGCCAGCGTCTATGCAGGCGCTGGGGGCTCGGGCTCCCGGATCTCTATGTCCCGCTCCACCAACTTCCAAGGCTGCTTGGGGTCTGGGGGCCTGGCTGCGGGGCTGGCCGGGGGTCTGGAGAGAATGGGAGGCATCCACAAGGAGAAGGAGACCATGCAAAGCCTGAACGACTGCCTGGCCTCCTACCTGGACAGAGTGAGGAGCCAGGAGACCGAGAACCAGAAGCTGGAAAACAAAATCTGGGAGCACCTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGGGCCATTACTTCAAGACCATCGAGGAACTGAGGACTCAGATCTTTGCAAATACTGTGGACAATGCCCGCATTGTTCTGCAGATCAACAATGCCCGTCTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGGGCTGGCCATGCGCCAGTCTGTGGAGAGCGAAATCCATGGGCTCTGCAAAGTCACTGATGACACAAATGTCACTCGGCTGCAGCTGGAGACAGAGATCGAAGCTCTCAAGGAGGAGCTGCTCTTCATGAAGAAAAACCACAAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGACCATGGAGGTAGATGCCCCCAAATCTCAGAACCTCACCAAGATCATGGCAGACATCCGGGCCCAATACAAGGAGCTGGCTCGGAAGAACCAAGAGGAGCTGGACAAGTACTAGTCTCAGTAGATTGAGGAGAGCACCACAGTGGTCACCACACAGTCCGCCGAGGTTGAAGCTGCTGAGGTGACACTCAATGGAGCCGAGACATACAATCCAGTCTTTAGAGATCGACCTGAACTCTTTGAGAGATCTGAAAGCCAGCTTGGAGAACAGCCTGAGTGGAGGCCCACTACATCCTTCAGATGTAGCTCAACGGGATCCTGCTTCACCTGGAGTCAGAGCTGGCATAGACCTGGGCAGAGGGGCAGCTCCAGGCCCAGGAGTGCCAGGCCCTGCTGAACATCAAAGTCAAGCAGGAGGCTGAGATCACCACCTAACGCTGCCTGCTGGAAGACGGTGAGGAATTCAGTCTTGGTGATGCCCTGAACAGCAGCAACTCCATGCAAACCACCCAAAAGACCACCACCCACCATATAGTGGACGGCAAAGTGGTGTCTGAGACCAATGACTCCAAAGTTCTGAGACATTAAGCCAGGAGAAGCAGGGTCCACTCTGGGGAGCAGGAGGCCAATAAAAAGTTCAGAGA
>NM_000224.3
GCCGCCACCGTCGTCCGCAAAGCCTGAGTCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTCCAGGCGCCCAGCTACGGCGCCCGGCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCTGGGGGCTCTGGTTCCCGGATCTCCGTGTCCCGCTCCACCAGCTTCAGGGGCGGCATGGGGTCCGGGGGCCTGGCCACCGGGATAGCCGGGGGTCTGGCAGGAATGGGAGGCATCCAGAACGAGAAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTTACCTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCGAGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAACGACATCCATGGGCTCCGCAAGGTCATTGATGACACCAATATCACACGACTGCAGCTGGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGAAGAAGAACCACGAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGACCGTGGAGGTAGATGCCCCCAAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGCCCAATATGACGAGCTGGCTCGGAAGAACCGAGAGGAGCTAGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCACCACACAGTCTGCTGAGGTTGGAGCTGCTGAGACGACGCTCACAGAGCTGAGACGTACAGTCCAGTCCTTGGAGATCGACCTGGACTCCATGAGAAATCTGAAGGCCAGCTTGGAGAACAGCCTGAGGGAGGTGGAGGCCCGCTACGCCCTACAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTCAGAGCTggcacagacccgggcagagggacagcgccaggcccaggAGTATGAGGCCCTGCTGAACATCAAGGTCAAGCTGGAGGCTGAGATCGCCACCTACCGCCGCCTGCTGGAAGATGGCGAGGACTTTAATCTTGGTGATGCCTTGGACAGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTGGATGGCAAAGTGGTGTCTGAGACCAATGACACCAAAGTTCTGAGGCATTAAGCCAGCAGAAGCAGGGTACCCTTTGGGGAGCAGGAGGCCAATAAAAAGTTCAGAGTTCATTGGA

Publications

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