Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name SUDS3P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:177971160-177973821  UCSC
Coordinates (hg19) chr5:177398161-177400822  UCSC
Strand +
Parental Sequence XM_011538671.2
Parental seq. overlap 2530 bp
Parental seq. overlap (%) 43.6%
Genomic Region Intergenic
Retrocopy Summary SUDS3P1, located on chr5:177971160-177973821, is a retrocopy of the parental gene SUDS3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUDS3
Full Name SDS3 homolog, SIN3A corepressor complex component
Also known as SAP45|SDS3
Coordinate chr12:118373189-118418033
Strand +
Gene summary SDS3 is a subunit of the histone deacetylase (see HDAC1; MIM 601241)-dependent SIN3A (MIM 607776) corepressor complex (Fleischer et al., 2003 [PubMed 12724404]).[supplied by OMIM, Mar 2008]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus SUDS3P1
Gorilla Gorilla gorilla SUDS3P1
Orangutan Pongo abelii SUDS3P1
Chimpanzee Pan troglodytes Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUDS3P1
GGCGGGGGGCGGAGCTCGGCGGAGACGGGAAGGGGTCGCAGTGGCTGCCGCTCCTCGAGTTGGGGGCCCCCTCGGACACCGCCAGGCAGACGGCGAGTACCGAGCGTGGGTGGCCGCGGTGTCCGTGGGCCACGCTCAGCTGCGGTCAGAGGCGACATGAGCGCCGCGGGGCTGCTGGCCCCGGCCCCGCCCGGGCTGGAGCGTCCCCGGGGAGGACGAAGAGCTGGAGAGCGCCAAGGACGACGAGCGCAGCTGCCGGGCCGCGAGTCGGACGAAGACACTGAGGATGCTAGTGAAACTGACCTGGCAAAGCATGATGAAGAAGACTATGGGGAAGTGAAGGAACAGATGTATCAGGACAAACTGGCTTCTCTCGAGAGGCAGTTGCAACAACTACAAGAAGGTACATTACAGGAATATCAGAAGAGAATGAAAAAACTAGGTCAGCAGTACAAAGAGAGGATACGGAATGCTGAACTCTTCCTCCAGCTGGAAACTGAACAAGTGGGACGAAATTACATGAAAGAAAAGAAGGCAGCAGTGAAAGAATTTGAAGACAAGAAGGTTGAGCTGAAAGAGAACCTGATTGCTGAGCTAGCAGAAGAGAAGAAAATGATTGAAAACGAAATGCTGACAATGGAACTGAATGGAGATTCTATGCAGGTGAGACCTATCATGACCAGAAAGTTGCGGAGGCGACCAAATGATCCCGTCCCCATCCCAGACAAGAGGAGGAAACCTGCTCCAGCCCAGCTAAACTATTTGTTAACAGATGAACAGATCATGGAGGATCTGAGAACATTAAATAAGCTTAAGTCACCCAAGAGACCAGCATCTCCATCCTCTCCTGAGCACTTGCCTGCGACACCCGCGGAATCTCCAGCCCAGAGGTTTGAAGCTCGGATAGAAGATGGCAAACTGCACTATGACAAAAGATGGTACCACAAGAGCCAGGCCATCTATCTGGAGTCAAAGGACAACCAGAAACTGAGCTGCGTGATCAGTTCTGTAGGAGCCAATGAGATCTGGGTGAGGAAGACAAGTGACAGCACCAAGATGAGGATCTACCTGGGCCAGCTTCAGCGCGGGCTCTTCGTCATCCACCGGCGCTCAGCTGCTTGACTTTCTACAGTGCTCTTCTCTTGACCCTTTTTCTGGAGTGGtCTTAACAGAAAAATGTTAACTTACTGGGAGTAGCTACTCAGCCTTAGAAATGGAGAGCATTGTAGTGGATTCTTTAAGGCACTTTTGTGGCCAGCCCCTTCCAACTTCCTCAGTCTTTTCTGCCTCAACTTCTTCCAGACATCAGTCACCATGAGACTGTTTTACTTTCAGGAGTATTGGGGGGTTTGATTTACTTTCCTTTTATTTCTTTGTTTTTTGCTTATACTTGTTTTTGAAAACCTCCTCTGAGTTTGAAGGGACAGCTATTTTTATTAATTATCTTTAAGTCTCTCTGCCATGGAGAAGAGCAGGAAGGCATACACTGTCCAGTGCATTTTCATTAGTGGATCACGTAGCTACTTTCCCTGTCGAGTCCAATTCACTATTTCCTCAGAAGCTTGGGGCAGAGGTCCTAGCAGAAGGAGATGAATTCTCCTGGCTCTCAGCCTTCTTGGAGAAATAAATGCTTTGTGTAACATCTGTGCACACCATCCATTCCACTGGCTGAGCGATGGAAAAGCTTGCCTGGGAGACTCTGTGCACTGAAGTAAATGGGGTTGGGGGAGGGGACATTTCATATTTATAATGTGCTGAAGGTACCATATTTTAAATGTTATTTAATGCGGTGATTTATTCAAACATTTATTCTAGCTTAAGCTGGAATAAGAAGTGGTCATTTCAGAAGTTTTCATTTGTAATTCCTTCCTCTCCCTTGTTCCCAAGTAGGTAGTAGTAGTATGTGCCACAGGCTGATTATCTGGGTAATCTCTTATGGGTGGGAGGTGAGATTGATAGTGCAGTAATCAGTGATCTATAGACCCGCATGCACGATTCAAGTTTCACTCTTGTGGCTGATGCCATCATTGCACATTGGCCATTCCAAACCTGCGGAGAACTTTGTTGTCAGGCCCTCAGCACTCAGAGCTTCATTTGGCCCAGGTTGAAGACAAGGAAAGCTCTGCCGTGGCTGCCTCTGCACTGACACCCTCCCTAATGAGTCCTGATGAAACAGCCTTTCCTACATCCTTCCCTCATTCCCATGATTGGAGAAATGATTCATTGGGTGATGAGTGTTGGGGTTTTCCATACTCATGTTGCCATCTTGAGATGTTTAAAAAATTTGGGGTTAGAGCAACTGTTAGCGTCTCCATGGGCAATCAGTAGAACTTACACATTCCAGGAAATCTTTCTTTGTAAATAATTCTTTTGGTCTCAAGTGATTCCCTTCAAGTTGTCTCTTGATGTACAAACCCCAAAGCAAGTTGGGGGGCTGTGATGACAATTAAATCACCTTCTCTGAAGTTCTGGCTCTACAGAGACCAGAACTTACTGACTTGTGCAGACTTGTACAAGTAAAGACTTATACAGATAGATTTTTGTTTTAACTTATAATCTGTTTTTTCCTCTTTTTTTTTTTTCTGGTGTTGGAGTCCTATTTAGAAAACAGGATAAATGACGCTGTTATAAAAA
>XM_011538671.2
AGTAACCTACGGGCCCGCCTGGGGTGCGGTCAGTCTTGTTTGTGCTGCTCTCCGGTCAAAGTTCATGGCGCTTCTCCCCACGCCTTTACTTTTCTTGGGAGATTCCCAGGGACCACCATGTTAGAGCCTTTGGGGAGGACCCCAGTCTCTCGCTAGACCTTGCACAGCTTTCTTAGTAATTCTGCCATGAACTAATATAGCATTAATTTGCCCAGGATTTGTAAAAATTTCCTGGATTTAAACCATTTCTTTTTAAAATCTCTTGCAAGGGAGTTGCCTCTCCTTGAATTGAGTTCAGCAGCCGTCAGTTTGATACCGTTGGGGGAAAAAAAATCTATATACAGTACTAGGTGCATACTTTGCCCAACTAAGCGTTCAATGCGGGGCACATTTTGATAGGTGCAAGGACAAAGCTTTAGAAATTTTCAGTTTGTAGGTTTTTATGACAGTAGGAAGACTGTGGTAGGGGAACCCTATTATTAGCTTAACAAGGTTTCAGCAAAGCTATTCAATATAACCTTTTTCCAGGGCCACAGGTTTTAATGATTCTATGTGAACGTGTGGCCAAAGGATAACGAGCTTTGACCCAGGTTTAACATGTGATAATCAGAGACTCCTCTTGATCCACGCTAAAGGATAGTGCCTGCCAGGGGTGAAAGTGCATCATGCTACTAAGACCCATTTGTGTTATTTTTGTGAAACTGGATATGCTGATCAAATCAACACCGGAAACAGAAAACTGCTTTCCTTACTCTTAACGCCAAAATTCTAGCTCCAGGCGCCGCCTGGCGGCTGTCTCCGGAAGTCGCCTGCGAGCCTCGGGGTCCTGACCGCTGCTGGGCCTGCCCGTAGATTTGCCTGACTCTAGCGAACCTGGCTCCGCCCCTCCCCCACTATACGTTGAGGATTTTAAGACGGCGATGAAAGGGCTGAGGTTGTGGCGACGGGGGCGTCCAGCGGCATCTCCACTCCCCCAAGGATGGCGGAATCAGGCCGTTGTCGGGCAGCTCTCGACCCGGAAGTCGCTCGCGGCGCGAGGCCCCCGTTGCCGAGCGCGGGCGCGGGGGGCGGAGCTCGGCGGAGACGGGGAAGGGGTCGCCGTGGCTGCCGGTCCTCGAGTTGGGGGCTGCCGCGGACACTGCTAGGCAGACGGCGAGTACCGAGCGCGGGTGGCCGCGGTGTCCGTGGGCCACGCTCAGCTGCGGTCAGAGGCGACATGAGTGCCGCGGGGCTGCTGGCCCCGGCCCCGGCCCAGGCTGGAGCGCCGCCGGCCCCCGAGTACTACCCCGAGGAGGATGAAGAGCTGGAGAGCGCCGAGGACGACGAGCGCAGCTGTCGGGGCCGCGAGTCGGACGAAGACACTGAGGATGCTAGTGAAACTGACCTGGCAAAGCATGATGAAGAAGACTATGTAGAAATGAAGGAACAGATGTATCAGGACAAACTGGCTTCTCTCAAGAGGCAGTTGCAACAACTGCAAGAAGGTACATTACAGGAATATCAGAAGAGAATGAAAAAACTAGATCAGCAGTACAAAGAGAGGATACGGAATGCAGAACTCTTCCTCCAGCTGGAAACTGAACAAGTGGAACGAAATTACATTAAAGAAAAGAAGGCAGCAGTGAAAGAATTTGAAGACAAGAAGGTTGAGCTGAAAGAGAACCTGATTGCTGAGCTAGAAGAAAAGAAGAAAATGATTGAAAATGAAAAGCTGACAATGGAACTGACTGGAGATTCTATGGAGGTGAAACCTATCATGACCAGAAAGTTGCGGAGGCGACCAAATGATCCCGTCCCCATCCCAGACAAGAGGAGGAAACCTGCTCCAGCCCAGCTAAACTATTTGTTAACAGATGAACAGATCATGGAGGATCTGAGAACATTAAATAAGCTTAAGTCACCCAAGAGACCAGCATCTCCATCCTCTCCTGAGCACTTGCCTGCAACACCCGCGGAATCTCCAGCCCAGAGGTTCGAAGCTCGGATAGAAGATGGCAAACTGTACTATGACAAAAGATGGTACCACAAGAGCCAGGCCATCTATCTGGAGTCAAAGGACAACCAGAAACTGAGCTGCGTGATCAGTTCTGTAGGAGCCAATGAGATCTGGGTGAGGAAGACAAGTGACAGCACCAAGATGAGGATCTACCTGGGCCAGCTTCAGCGCGGGCTCTTCGTGATCCGCCGGCGCTCAGCTGCTTGACTTTCTACAGTGCTCTTCTCTTGACCCTTTTTCTGGAGTGGGTTTTATTTTTGTTTTGTTTCGTTTTCTCCTTAATAGAAAAATGTTAACTTACTGGGAATAGCTACTCAGCCTTGGAAATGGAGAGCACTGCAGTGAATTCTTTAGGGCACTTTTGTGGCCGGATGCTTCCAACTTTGTCAGTCTTTTCTGCCTCAACTTCTTCCAGACATCAGTCACCATGAGACTGTTTTACTTTCAGGCGTATTGGGGGGTTTGATTTACTTTCCTTTTATTTCTTTATTTTTTGCTTATACTTGTTTTTGAAAACCTCCTCTGAGTTTGAAGGGACAGCTATTTTTATTGATTATCTTTAAGTCTCTCTACCATGGAGAAGAGCAGGAAGGGATACACTCTCCAGTGCATTTTCATGTTTTGAATCTGATTAGTGGATCACGTAGCTACTTTCCCTGTCGCGTCCAATTCACTATTTGCCCAGAAGCTTGGGGCAGAGGTCCTAGCAGGAGATGATGAATTCTCGTGGCTCTCGGCCTTCTCAGAGAAATAAATGCTTTGTGTAACATCTGTGCACACCATCCATTCCGCTCGCTGAGCGATGGAAAAGCTTGCCTGGAAGACTATGTGCACTGAAGTAAATGGGGTTGGGGGAGGGGACATTTCATATTTATAATGTGCTGAAGGTACCATATTTTAAATGTTATTTAATGCAGGTGATTTATTCAAACATTTGTTCTAGCTTAAGCTGGAATAAGCAGTGGTCATTTCAGAAGTTTTCATTTGTAATTCCTTCCTCTCCCTTGTTCCCAAGTAGGTAGTAGTAAGTATGTGCCACAGGCTGATTATCTGGGTAATCTTTTACGGGTGGGAGGTGAGATTGATAGTGCAATAATCAGTGATCTATAGACCCTCATGCACGATTCAAGTTTCACTCTTGTGGCTGATGCCATTATTGCACATTGGCCATTCCAAACCTGTGGAGAACTTTGTTGTCAGGCCCTGAGCGCTCACAGCTTCATTTGGCCCAGGTTGAAGACAAGGAAAGCTCTGCTGTGGCTGCCTCTGGACTGACACCCTCCCTAATGAGTCCTGATGAAACAGCCTTTCCTACATCCTTCCCTCACTCCCATGATTGGAGAAATGATTCATTGGGTGATGAGTGTTGGGGTTTTCTATACTCATGTTGCCATCTTGAGATGTTCAAAAAATTTGGGGTTAGAGCAACTGTTAGCGTCTCTATGAGCAATCAGTAGAACTTACACATCCTAGGAAATCTTTCTTTGTAAGTAATTCTTTTGGTCTCAAGTGATTCTCTTCATGTTGTCTCTTGATGTACATACCCCCAAGCAAGTTGGGGGGACTGTGATGACAATTAAATCACCTTCTCTGAAGTTCTGGCTCTGCAGAGACCAAACCTTACTGACTTGTACAGACTTGTACAAGTAAAGACTTATACAGATAGATTTTTGTTTTAACTTACAATCCGttttttcctcttttttttttttttttCTGGTGTTGGAGTCTTATTTAGAAAACAGGATAAATGACGCTGTTATCAAAAGTTGCCTGGGGTTCTGTATTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCATGGTAAACACAGGCTTCACCTGTTCTTGTTTGTTAGCCTTGACTGTGAGGCAGGACTTCCCTCGCTTGAACTGTTACACATACGATGTGTGTGTCACATCACATATTGTGCAGCTGTTGGTTTTCATGTAGTGCCCTGCGATGGAAATTAGATATATTTCATGTATTTTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAGTATACCAAAGTTTGTTTTTATAGTTGAGGATTGTATTGATAACCACTGGGGTTCCGCATTGAAGCAGGAACAAATTGCCTCTTTTTCTGGCCTTCTCTGTGGGACCTCTGCTTTTGTGAAGCAACTATTTATTTGAAGACCAGGGTATGGGCACTTTTGCCTTCTCTCCTCTCTGACTTTTGAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCGTCCTCACAACTCTTAATTGGGCCTAGTGAAAATGGGGGCAGGTGAGAAGTCCATTTTGAGAATCAGCATAGTAAATTACATTTCTAATCCCAGAGGACTTAATATTTTCTTTTGTCACCCCAGAGGTGAAAAATCAGCAGTTGAAGCCTGACAGGCCTCAGTGGTGACCAGGAACAGAAGCAGCCTTCCTGTTAGTAGATGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTGAAGTTTCTAGACGAGAAGGAGGCTAGCTTCTAGCCTGGGTGGCCATTATTCCAAAAGGTCATTGTTTCTCACTAGACCCCAGGGCACCAGATGAATTTCCAAGTTTAAACTCTTTCCTGCAGGTGATTACTTTGAAAAAGGTTGGTCCAGACCATTTTGATCAAGAACCTGTATATGTGTTGTGTTAGAGGCATCTGCCTCAAGTCTATGTACAGTGTTTGCTGCGGGTGTGTTCCAATATTCATTTTACCTCTGCTTGGGGGTTTTGTGTGTTCCCCTCCCCCCATGCCCTGCCTACCCCCTTTTCCCTGAACCACGTCCTTTTGAATAATTTCCAGATGGATTTCTGTAGCCATACCAAAGCCAGGGTGTTTTCATTCATGCGGATACTAGTATTTATAGATGTCTGACTACCTAACTTAATTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTGATCTGCAAATCAAGCTACATGTATTTGTGTATAAGACCCTGTGTTCAGGACTGGGTGACTTTTCTAAGAAATATGGGGTTTAGAATGGGGTTGACTGTATTTTTTAACCTAATTCTGGAGAGAAGATTGTATTTTTTACAGTTTTTTGGGTTTGGCTTCCTTCTCACATTTCTTTAGCTTTGAATTTTTACTAAATAAATTTCCTCCTGATTAATTTTTTTTTTCTCATCTGGGAATTTGAAATCTCGGTGCTTACTGTTACACCAATTTGTCCAAAGAGTTGAAATCACTTTAATGCCAGAACATGGTAAATTTGCAGCCATTTCAAGCAGGTGATGGTCTTTTTTTATAACATCGTTAACGGGTACCATTAAATATTCTGAGAGGTGAATGTAAAATATAAAAGGTATAGGTTTTTTTTTTTTTTTAAAGAAAACAATAAACTTTCAAAGAGAAAACCAGCATGAAGTCTGTATTGTATCCATTGACTTGATAAGTGATAGAAATTTATTTTAGGTTTTTGATCCATTGCTTATGGGGAAAGGAAGTTAGGGCAGAGGAAGGGATATTCTAGACATTTAATTCTTAGTGAAGACTAAGATACAGAATGATGTCAGGCTAATACTCAGTTTTGTAAAGAGCAATCTGGGGTGTTGACCCTTAAATGTTTGTGCACTCTTCTTGTTGCAGATAAAAGTCATTAAAAATCAAGTGAATAGAATGGATCTTGGGTGGAAAAACAATCTTGAAATAAACTTGTGATT

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