Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name OFD1P17
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Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:37209038-37212497  UCSC
Coordinates (T2T) chr5:37458864-37462323  UCSC
Coordinates (hg19) chr5:37209140-37212599  UCSC
Strand +
Parental Sequence NM_003611.3
Parental seq. overlap 3256 bp
Parental seq. overlap (%) 89.8%
Genomic Region Intragenic (CPLANE1)
Retrocopy Summary OFD1P17, located on chr5:37209038-37212497, is a retrocopy of the parental gene OFD1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name OFD1
Full Name OFD1 centriole and centriolar satellite protein
Also known as 71-7A|CXorf5|JBTS10|RP23|SGBS2
Coordinate chrX:13734726-13773978
Strand +
Gene summary This gene is located on the X chromosome and encodes a centrosomal protein. A knockout mouse model has been used to study the effect of mutations in this gene. The mouse gene is also located on the X chromosome, however, unlike the human gene it is not subject to X inactivation. Mutations in this gene are associated with oral-facial-digital syndrome type I and Simpson-Golabi-Behmel syndrome type 2. Many pseudogenes have been identified; a single pseudogene is found on chromosome 5 while as many as fifteen have been found on the Y chromosome. [provided by RefSeq, Aug 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes OFD1P1
Bonobo Pan paniscus OFD1P1
Orangutan Pongo abelii OFD1P1
Gibbon Nomascus leucogenys OFD1P1
Green monkey Chlorocebus sabaeus OFD1P1
Crab-eating macaque Macaca fascicularis OFD1P1
Rhesus Macaca mulatta OFD1P1
Baboon Papio anubis OFD1P1
Golden snub-nosed monkey Rhinopithecus roxellana OFD1P1
Gorilla Gorilla gorilla Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>OFD1P17
ATGTGAGGCGGTCCTGCCTTGCCGCCTTCTGTCCCTAGTCTCCGGGTCCCCGCCCTCCAGCCGCCTTTGATTCGTGACTGGGTCACGGTCCTCACTCATTCCTCAGAACCGCGAAGAAAGGAAGCTAGCGTGTTTGTTAGAAAACCTAGTTGGGAGTGCAAGGCAGAGAGCGTTCAGCACCCTTGTTCCTCCCGACCCCTCAGGACAGAAGCAGGGCTCTGGAGGGCAGGGATTCCCCCTCGTCTTGGCCCTACAGCCCCAGCTGGGCACTAAACTCGGGCCACGGCGGGGCGAGCGAGGCGGGCTCCGGAGGAAGCTGACGGCTGATGATGGCTCAGTCCAACATGCTCCCCGTGGCTGATGTGTTGAGTCAAAATGAACTGCGCAAAAAGCTATACCAGACATTTAAGGATCGGGGTATACTGGAAACACTCAAGATACAACTTCGAAACCAGCTAATTCATGAGTTAATGCACCCTGTATTGAGTGGAGAACTGCAACCTCAGTCCATTTCAGTGCAAGGGAGCTCCCTCTTAATAAGTGCCTCTAACTCTTTAGTGGCAGATCACTTACAAAGATGTGGCTGTGAATATTCACTTTCTGTTTTCTTTCTAGAAAGTGGTTTGGCAAAAGAAAAGGTATTTACTATGCAGGATCTATTACAACTCATTAAAATCAACCCTACTTCCAGTCTGTACAAATCACTGGTTTCAGGAGCTGATAAAGAAAACCAAAAAGGTTTTCTTATGCATTTTTTAAAAGGATTGGCAGAATATCATCAAGCTAAAGAAAGTTGTAATATGGAAACTCAGACAAGTTCGACATTTAGCAGAGATTCTCTGGCTGAGAAGCTTCAGCTTATTGATGATCAGTTTGCAGATGCTTACCCTCAGCGTATCAAGTTTGAGTCTTTAGAAATAAAGCTAAATGAATATAAGAGAGAAATAGAAGAGCAACTTCGGGAAGAAATATGTCAAAAGTTGAAGTTTTTTAAAGATACCGAAATAGGAAAAATTAAAATGGAAGCAAAAAAAAAGTATGAGAAGGAATTAGCCGTGTTCCAGAATGATTTTGAGAAAGCTTGTCAAGCAAAATCTGAAGCCCTTGTTATTCGGGAAAAGAGCACCCTTGAGAGAATTCAAAAGCACCAAGAGATTGAAACAAAAGAGATTTATGCTCAAAGGCAACTTTTACTAAAAGATATGGATTTGCTAAGAGGAAGAGAAGCAGAGCTGAAGCAAAGAGTTGAAGCTTTTGAACTGAACCAGAAGCTCCAGGAAGAAAAACATAAAAGTATGACTGAGGCACTTAGGAGACGGGAGCAGAATATAAAGAGTTTTGAGAAGACCTATGACCAAAAACTCAAGAATGAACTCCTAAAGTATCAACTTGAACTAAAGGACGACTACATCATTAGAACTAATCGACTGATTGAAGATGAAAGGAAGAATAAAGAAAAAGCTGTTCATTTGCAAGAGGAGCTCATAGCTTTTAATTCAAAAAAGGAGGAACTCAATCAATCTATAAATCGCATGAAAGAACTTGAGCTTGAATTAGAGTCTGTCAAAGCCCAGTCTTTGGCAATAACAAAACAAAACCATATGCTGAATGAAAAGGTTAAAGTGATGAGTGACTATTCACTACTAAAAGAAGAGAGACTGGAGCTTCTGGCACAAAATAAATTACTTAAACAACAACTGGAAGAGAGTAGAAATGAAAACTTGCGTCTCCTAAACCGCCTAGCTCAGCTGGCTCCTGAACTTGCGGTCTTTCAGAAAGAACTAAGGAGAGCAGAAAAGGCTACAGTGGTTGAGCATGAGGAGTTCGAAAGCCGCAAACAAGCTCTGCACAAACAACTGCAAGATGAAATTGAGCATACTACACAGTTGAAGGCCCAGATACTAGGTTACAAAGTTTCCATAAAGAGGTTAACTATTCAGGTTGCCGATTTAAAATCGCAATTGAAGCAAACTCAGACAGCCCTAGAGAATGAAGTGTACTGCAATCCAAAGCAGTCTGTGATCCATCATTCTGCCAATGGATTAATAAATGGCAACATGGTGCTTCACAATGGTGAGATAAGTGGGGATTTCTTGAACAATCCTTTTAAACAGGAAAAAGTTCTAGCAGGTACGGTTGCATCAAGGATCACAAATTATCCAAATGCAGGGATGGAGGGTAGTTCCCCTGATTCTGACCTTGAGTTTGTCGCCAATACTAATGCAAGGGTCAAACAGCTTCAGCAAGAGGCGGAACGCTTGGAAAAGGCTTTCAGAAGTTACCATCGGAGAGACATTAAAAACTCTGCCAAAGGCCCACTACCAGCAAAGAGCCCACCATCTCTGCACTTGCTGGAAGCCTTCAAAAACATTACTTCCAGTTCCCCGGAAAGACGTATTTTTGCAGAGGACAGAGTTGTCTCTGAGCAGCCTCAAGTGGGCACACTTAAAGAAGAAAGGAATGACATCTTGGAAGCCCTGACAGGCAGTGCAGCCTCAAGGCTATGCGGGGGCACTTCCTCCAGACGCCTCTCCTCCACACCCCTTCCAAAAGCAAAAAGAAGCCTTGAAAGTGAAATATATCTGGAAGGTCTGGGCAGATCACACATTGCTTCCCCCAGTCCTTATCCTGACAGAATGCCCCCGCCATCACCCGCTGAGTCTAGGCACAACCTCTCCATCCCTCCCTTCTCCAGCCCTCCGGAGCAGAAAGCGGGTCTTTACTGGAGACAAAATGAACTTCAAGACAAAAGTGAATTTTCAGATGCGGACAAGCTAGCTTTTAAGGATAACGAGGAATTTGAATCATCTTTTGAATATGCACGGAATGTGCCAAGGCAGTTTGAAATGGATGGGCCCTCTCCTGCCGGGGATATGCTTCATATGGGCGCAGCTGTAGCTGCTGTGCCCCTCTCATATCAGCACCCAAGTGTAGATCAGAAACAAATTGAAGAACAAAAGGAAGAAGAAAAAATATGGGAACAGCAAGTGAAAGAACGAAAGCAGAGAGAAGAAAGAAGGCAGAGTAACCTACAAGAAATTTTAGAAAGGGAAAGAAGAGAACTAGAAAAACTGTATCAGGAAAGGAGGATGACTGAAGAATCACTGAAGATTGAAATGGAAAATGAATTAGAAATGAGTAATCAAGAAATGAAAGACAAATCTGCTCACAGTGAAAATCCTTTAGAGAAATACATGAAAATCATCCAGCAAGACCAGGAGTCGGCAGATAAGAGCTCAAAAAAGATGGTCCAGGAAGGCTCCCTAGTGGACACACTGCAATGTAGTGACAAAGTCGAAAGTTTAACACGCTTTTCTCATGAAGAACCAGATGACTCTTGGTAACCATGTTTGCTGCCCAGCTTCTAACTTACATACCATGAGAAATTACATAACATTTACTCCTTTGTAAATGTTTCTCTATCAACAGATAAAACTCTGAATAAAAATGTGTAATCC
>NM_003611.3
ACTGGCTGTGAGGCGGTCCTGCCTCGCTGCCTTCAGTCCCTAGTGTCTGGGTCCCCGCCCTCCAGCCGCCTTTGAGTCGTGCCTGGGTCCTCGCCCTTGCCTCAGAACCGCGAAGAAAGGAAGCTCGCGTGTTTGCTAGAAAACCTAGTTGGGAGTGCGAGGCAGAGAACGTTCAGCACCTTTGTTCCTCCCGAACCCTCGGGACAGAGGCAGGGTTCTGAGGGCAGGGATTCCCCCTCGTCTTGGCCCCACCGCCCGGGCTGGGCACTAAACTCGGGCCGCGGCGGGGCGAGCGAGGCGGGCTCCGGAGGGAGCTGACGCCTGATGATGGCGCAGTCCAACATGTTTACCGTGGCTGATGTGTTGAGTCAAGATGAACTGCGCAAAAAGCTATACCAGACGTTTAAGGATCGGGGTATACTGGATACACTCAAGACACAACTTCGAAACCAGCTAATTCATGAGTTGATGCACCCTGTATTGAGTGGAGAACTGCAGCCTCGGTCCATTTCAGTAGAAGGGAGCTCCCTCTTAATAGGCGCCTCTAACTCTTTAGTGGCAGATCACTTACAAAGATGTGGCTATGAATATTCACTTTCTGTTTTCTTTCCAGAAAGTGGTTTGGCAAAAGAAAAGGTATTTACTATGCAGGATCTATTACAACTCATTAAAATCAACCCTACTTCCAGTCTCTACAAATCACTGGTTTCAGGATCTGATAAAGAAAATCAAAAAGGTTTTCTTATGCATTTTTTAAAAGAATTGGCAGAATATCATCAAGCTAAAGAGAGTTGTAATATGGAAACTCAGACAAGTTCGACATTTAACAGAGATTCTCTGGCTGAGAAGCTTCAGCTTATTGATGATCAGTTTGCAGATGCTTACCCTCAGCGTATCAAGTTCGAATCTTTAGAAATAAAGCTAAATGAGTATAAGAGAGAAATAGAAGAGCAACTTCGGGCAGAAATGTGTCAAAAGTTGAAGTTTTTTAAAGATACCGAGATAGCAAAAATTAAAATGGAAGCAAAAAAAAAGTATGAAAAGGAGTTAACCATGTTCCAGAATGATTTTGAAAAAGCTTGTCAAGCAAAATCTGAAGCTCTCGTTCTTCGGGAAAAGAGTACCCTTGAAAGAATTCACAAGCACCAAGAGATTGAAACAAAAGAAATTTATGCTCAAAGGCAACTTTTACTAAAAGATATGGATTTGCTAAGAGGAAGAGAAGCAGAGCTGAAGCAAAGAGTTGAAGCTTTTGAATTGAACCAGAAGCTCCAGGAAGAAAAACATAAAAGCATAACTGAGGCACTTAGGAGACAGGAGCAGAATATAAAGAGTTTTGAGGAGACCTATGACCGAAAGCTCAAGAATGAACTTCTAAAGTATCAACTTGAACTGAAGGATGACTACATCATTAGAACTAATCGACTGATTGAAGATGAAAGGAAGAATAAAGAAAAAGCTGTTCATTTGCAAGAGGAGCTCATAGCTATTAATTCAAAAAAGGAGGAACTCAATCAATCTGTAAATCGTGTGAAAGAACTTGAGCTTGAATTAGAGTCTGTCAAAGCCCAGTCTTTGGCAATAACAAAACAAAACCATATGCTGAATGAAAAGGTTAAAGAGATGAGTGATTATTCACTACTAAAAGAAGAGAAACTGGAGCTTCTGGCACAAAATAAATTACTTAAACAACAACTGGAAGAGAGTAGAAATGAAAACCTGCGTCTCCTAAACCGCCTAGCTCAGCCGGCTCCTGAACTTGCAGTCTTTCAGAAAGAACTACGGAAAGCCGAAAAGGCTATAGTGGTTGAGCATGAGGAGTTCGAAAGCTGCAGGCAAGCTCTGCACAAACAACTGCAAGACGAAATTGAGCATTCTGCACAGCTGAAGGCCCAGATTCTAGGTTACAAAGCTTCTGTAAAGAGTTTAACTACTCAGGTTGCCGATTTAAAATTGCAACTGAAGCAAACTCAGACAGCCCTAGAGAATGAAGTGTACTGCAATCCAAAGCAGTCTGTGATCGATCGTTCTGTCAATGGATTAATAAATGGCAATGTGGTGCCTTGCAATGGTGAGATAAGTGGGGATTTCTTGAACAATCCTTTTAAACAGGAAAACGTTCTAGCACGTATGGTTGCATCAAGGATCACAAATTATCCAACTGCATGGGTGGAGGGTAGTTCCCCTGATTCTGACCTTGAGTTTGTAGCCAATACTAAGGCAAGGGTCAAAGAGCTTCAGCAAGAGGCCGAACGCTTGGAAAAGGCTTTCAGAAGTTACCATCGGAGAGTCATTAAAAACTCTGCCAAAAGCCCACTAGCAGCAAAGAGCCCACCATCTCTGCACTTGCTGGAAGCCTTCAAAAACATTACTTCCAGTTCCCCGGAAAGACATATTTTTGGAGAGGACAGAGTTGTCTCTGAGCAGCCTCAAGTGGGCACACTTGAAGAAAGGAATGACGTCGTGGAAGCACTGACAGGCAGTGCAGCCTCGAGGCTCCGCGGGGGCACTTCCTCCAGACGCCTCTCTTCCACACCCCTTCCAAAAGCAAAAAGAAGCCTCGAAAGTGAAATGTATCTGGAAGGTCTGGGCAGATCACACATTGCTTCCCCCAGTCCTTGTCCTGACAGAATGCCCCTACCATCACCCACTGAGTCTAGGCACAGCCTCTCCATCCCTCCTGTCTCCAGCCCTCCGGAGCAGAAAGTGGGTCTTTATCGAAGACAAACTGAACTTCAAGACAAAAGTGAATTTTCAGATGTGGACAAGCTAGCTTTTAAGGATAATGAGGAGTTTGAATCATCTTTTGAATCTGCAGGGAACATGCCAAGGCAGTTGGAAATGGGCGGGCTTTCTCCTGCCGGGGATATGTCTCATGTGGACGCTGCTGCAGCTGCTGTGCCCCTCTCATATCAGCACCCAAGTGTAGATCAGAAACAAATTGAAGAACAAAAGGAAGAAGAAAAAATACGGGAACAGCAAGTGAAAGAACGAAGGCAGAGAGAAGAAAGAAGGCAGAGTAACCTACAAGAAGTTTTAGAAAGGGAACGAAGAGAACTAGAAAAACTGTATCAGGAAAGGAAGATGATTGAAGAATCACTgaagattaaaataaaaaaggaattagaaatggaaaatgaattagaaatgagtaatcaagaaatAAAAGACAAATCTGCTCACAGTGAAAATCCTTTAGAGAAATACATGAAAATCATCCAGCAGGAGCAAGACCAGGAGTCGGCAGATAAGAGCTCAAAAAAGATGGTCCAAGAAGGCTCCCTAGTGGACACGCTGCAATCTAGTGACAAAGTCGAAAGTTTAACAGGCTTTTCTCATGAAGAACTAGACGACTCTTGGTAACCATGTTTGCTGCCCAGCTTCTAACTTACATACCGTGAGAAGTTACGTAACATTTACTCCTTTGTAAATGTTTCCCTATCATCAGACAAAACTCAATAAAAATGTGTGTAATCCAATGTGGGTTTTTTTTTCCATAATTAATTTTGATACCATAGTGTGTGAACCAAGAATAATCTAGTCACGTGAAACCTCTTCTCCAGTCATAGTATTTCTCATTCATTATAATAAAAGTAACTGGCTTTTAACCTC

Publications

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