Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CFAP53P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:39571725-39571871  UCSC
Coordinates (T2T) chr5:39821908-39822054  UCSC
Coordinates (hg19) chr5:39571827-39571973  UCSC
Strand -
Parental Sequence NM_145020.5
Parental seq. overlap 122 bp
Parental seq. overlap (%) 6.7%
Genomic Region Intergenic
Retrocopy Summary CFAP53P1, located on chr5:39571725-39571871, is a retrocopy of the parental gene CFAP53. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CFAP53
Full Name cilia and flagella associated protein 53
Also known as CCDC11|HTX6
Coordinate chr18:50227193-50266495
Strand -
Gene summary This gene belongs to the CFAP53 family. It was found to be differentially expressed by the ciliated cells of frog epidermis and in skin fibroblasts from human. Mutations in this gene are associated with visceral heterotaxy-6, which implicates this gene in determination of left-right asymmetric patterning. [provided by RefSeq, Aug 2015]

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii CFAP53P1
Marmoset Callithrix jacchus CFAP53P1
Pig Sus scrofa CFAP53P1
Dolphin Tursiops truncatus CFAP53P1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CFAP53P1
GAAAAGGAGGCAAGGAAACAACTTGTGAATGAGGTTATGTGTACAGGAAAAGTTCAAGTTCAAGAAACATTGCAAAGAAAAGCAAAATAATAGAAAAGATATGCTATGGAACAGGATTGCATAAATGAAGGTTTTAAAGAACTTAAG
>NM_145020.5
AGACTTCTGCGTCGCGGAAGCGGGTCCCGCAGGTCGCCACGGTTGGGGGAAACGCGGCGGACGCCGCCCCCGTCCCGAAGGGGACTCGAAAATGTACAGCCAGCGGTTTGGCACCGTACAGCGGGAGGTTAAGGGCCCCACCCCCAAAGTGGTGATCGTGAGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTTGGACAGCCTTGTGCGAGCAAGAATCAAGGATGCTGTGCAAGGGTTTATCATTAACATTGAAGAAAGACGAAATAAGCTACGTGAGCTTTTAGCATTAGAAGAAAATGAGTATTTTACAGAAATGCAATTGAAGAAAGAAACCATTGAGGAGAAAAAAGATAGGATGAGAGAGAAAACTAAATTACTAAAAGAGAAGAATGAAAAAGAGAGGCAGGATTTTGTGGCTGAAAAGCTAGACCAGCAATTCAGGGAACGCTGTGAGGAGCTCCGTGTTGAATTGTTATCTATCCATCAGAAGAAGGTGTGTGAGGAGCGGAAAGCACAGATTGCATTTAATGAGGAGCTGAGCAGGCAAAAGCTGGTGGAAGAGCAGATGTTCTCCAAACTCTGGGAGGAAGACCGATTAGCCAAGGAAAAGCGAGAAGCCCAAGAGGCGAGGAGACAGAAAGAGCTGATGGAGAACACACGCCTGGGGCTGAATGCCCAGATCACCAGCATCAAGGCACAAAGGCAGGCGACACAGCTGCTGAAGGAAGAGGAGGCACGCCTTGTGGAAAGTAACAACGCACAGATTAAACATGAGAATGAACAGGATATGCTAAAGAAACAGAAGGCAAAGCAGGAAACTAGGACCATTTTGCAAAAAGCCCTACAAGAGAGGATAGAACATATTCAGCAGGAATACAGAGACGAACAGGACTTGAACATGAAGCTCGTGCAAAGGGCCCTTCAAGACTTACAGGAAGAGGCAGATAAAAAGAAACAAAAAAGAGAAGATATGATAAGAGAACAGAAGATATACCATAAATATTTGGCACAGAGACGTGAGGAAGAAAAAGCTCAGGAGAAAGAATTTGACAGAATATTAGAGGAAGACAAGGCAAAGAAGTTGGCTGAGAAGGACAAGGAGCTGAGACTTGAAAAGGAGGCAAGGAGACAGCTTGTGGATGAGGTCATGTGTACAAGAAAACTTCAAGTTCAAGAAAAGTTGCAACGAGAAGCTAAAGAACAGGAAGAACGTGCTATGGAACAGAAACACATAAATGAAAGTCTTAAAGAACTTAACTGTGAAGAGAAGGAGAATTTTGCAAGACGCCAACGTTTAGCCCAGGAGTACAGGAAGCAACTTCAGATGCAAATCGCCTACCAGCAGCAGTCCCAAGAAGCAGAGAAGGAAGAGAAACGCCGAGAGTTTGAAGCAGGTGTAGCAGCAAACAAGATGTGTTTGGACAAGGTCCAGGAGGTCCTGTCCACCCATCAAGTGCTGCCTCAAAACATTCATCCCATGCGCAAGGCATGCCCCAGTAAGCTTCCACCGTAGTTCCGTGAGCATCAATATATCTTTTCTTGGTCTTTTAATATTTTTAACTACAGTATGCTTGTATGCTTCTTTTAACTCCTGGATAAACTTTTCTTTTTTCCCTGAGTTTGTGTAATTAATTGAACATAATTTTCTTCCTTTGAATAAACCTGTGCCTATTTTGGAGTTCACAGACTTACAAATCCAAA

Publications

PMID - Link Title