Retrocopy Name | INTS6P1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr5:39718737-39721510 UCSC | |
Coordinates (T2T) | chr5:39968928-39971701 UCSC | |
Coordinates (hg19) | chr5:39718839-39721612 UCSC | |
Strand | - | |
Parental Sequence | XM_011535041.2 | |
Parental seq. overlap | 2526 bp | |
Parental seq. overlap (%) | 38.6% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | INTS6P1, located on chr5:39718737-39721510, is a retrocopy of the parental gene INTS6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | INTS6 |
Full Name | integrator complex subunit 6 |
Also known as | DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 |
Coordinate | chr13:51353171-51453333 |
Strand | - |
Gene summary | DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. The protein encoded by this gene is a DEAD box protein that is part of a complex that interacts with the C-terminus of RNA polymerase II and is involved in 3' end processing of snRNAs. In addition, this gene is a candidate tumor suppressor and is located in the critical region of loss of heterozygosity (LOH). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2015] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | INTS6P1 |
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Bonobo | Pan paniscus | INTS6P1 |
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Gorilla | Gorilla gorilla | INTS6P1 |
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Orangutan | Pongo abelii | INTS6P1 |
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Gibbon | Nomascus leucogenys | INTS6P1 |
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Green monkey | Chlorocebus sabaeus | INTS6P1 |
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Crab-eating macaque | Macaca fascicularis | INTS6P1 |
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Rhesus | Macaca mulatta | INTS6P1 |
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Baboon | Papio anubis | INTS6P1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | INTS6P1 |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>INTS6P1 |
GCTCCGTGCCCGGGACCCTGCCAGCAGAGGAGACAGGTATATGCTCGTCACTTTCGAAGAGCCGCCCTGTGCTATCAAGGCTGGATGGAAAGAAAACCATGCAACGTTTATGAATGAACTGAAAAACCTTCAGGCTGAAGGACTTAGGACTCTTGGCCAATCCCTAAGGACAGCTTTTGATTTATTAAATTTAAATAGATTAGCAACTGGCATAGACAACTATGGGCAGGGAAGAAACCCTTTTTTCTTGGAGCCAGCAATAATTATCACAATTACTGATGGGAGCAAGTTGACTACCACCAGTGGAGTCCAGGATGAGCTTCATTTACCTCTTAATTCTCCTTTGCCTGGAAGTGAATTGACCAAGGAACCTTTTCCTTGGGATCAGAGATTCTTTGCATTAGTGTTGCAGTTGCCTGGCACCATGTCAGTAGAATCAGAACAGTTGACAGGTGTGCCTTTAGATGACCCTGCAATCACACCAGACGGCTGGTCGTATTTTGTGTGTTCTCCAAGAATGCTTAATCAGTGTCTGGAGTCCTTGGTGCAGAAAGTACAAAGTTGGGTGGTAATAAACTTTCAAAAAGCAGGACCGGATCCTTCCCCTGTAGAAGATGGGCAGCCAGATATATCAAGGCCTTTTGGATCTCAGCCTTGGCATAACTGTCACAAACTCATATGTGTCAGACCAAATCCTAAAACTGGGGTTCCTATAGGTCATTGGCCTGTTCCAGAGTCTTTTTGGCCAGATCAAAATTCGCCAACACCACCACTTCGTACATCTCATCCTGTAGTGAAGTTTTCCTGTACAGACTGAACCAATGGTTATTGATAAACTTCCTTTTGACAAATACGAGTTGGAACCTTCATCACTGACTCAATTTATCCTGGAAAGGAAATCTCCTCAAACATGTTGGCAGGTGTACGTCAGCAATAGTGCAAAATACAGTGAACTTGGTCATCCTTTTGGTTACTTGAAAGCCAGTATGGCACTGAACTGTGTCAATGTATTTGTGATGCCTTACAATTACCCAGTCCTTCCCCTCTTAGATGACTTGCTTAAAGTGCATAAAGCAAAACCAACACTGAAGTGGAGACAGTCATTTGAAAGTTATTTGAAGACCGTGCCTCCCTACTATCTCGGGCCCTTCAAGAAAGCTGTTAGTATGATGGGAGCACCTAACCTAATAGCAGACAGTATGGAATATGGACTTAGTTACAGTGTCATTTCATACCTCAAAAAACTGAGTCAACAGGCCAAAATAGAATCTGATCGAGTCATTGGATCTGTAGGCAAAAAAGGAGTACAGGAAACTGAAATAAAAGTCTGGAGCCAATCACATGGTTTATCAAGGGCATATAGGAAAGATTTTCAACAGCTCCTCCAGGGAATTTCAGATGTCCCTCACAGACTGCTAGACCTTAATATGAAGGAATACGCTGGGTTCCACGTTGCTTTGCTGAATAAGGATTTGAAGCCACAGACATTTAGAAATGCTTATGACATTCCAAGACGAAATCTTTTGGATCACTTAACAAGAATGAGATCTAATCTTTTGAAGCACACTCGCAGATTTCTTAAAGGACAGGACGAAGATCAAGTGCAGTGTTCCTATAGCACAAATGGGGAACTACCAGGAATACCTCAAGCAAGTTACCTTCTCCACTAAGAGAACTTGATCCTGATCAGCCGCAAAGGTTACATACATTTGGCAATTCCTTTAAGCTGGATAAAAAGGGTATGATGACAGATGAAGCAGATGAATTTGTGGCTGGACCTCAAAATAAACATAAATGACCTGGAGAATCAAATATGCAAGGGATCCCTAAAAGACGTCAGTGTATGTCTCCACTACTAAGAGGCAGACAGCAGAATCCTGTTGTAAACAATCATATCGGGGGAAAAGGACCACCTGCACCTACAACTCAAGCACAGCCAGATCTTATTAAGCTTCTTCCTCTTCATAAAATTTCAGAAACCACTAATGATTCGATAATACATGATGTGGTTGAAAATCATGTTGCAGACCAACTTTCGTCAGACATTACACCAAATGCTATGGATACTGAATTTTCAACATCTTCTCCAGCCAGTTTACTGGAAGGGCCAACCAATCATATGGAGGCTCCTGGTCATGACAATTTAGGAACGAATGACCTCACTGTTGGTGGATTTTTAGAAAATCATGAGGAGCCAAGAGATAAAGAACAATGTGCTGAAGAGAACATACCAGCATCTTCACTCAACAAAGGAAAGAAATTGATCCATTGCAGAAGCCATGAAGAGGTCAATATCGAACTAAAACCACAAATAATGAAAGAGATCTGAAAGCCAGGGAGAAAATATGAAAGAATCTTCACTTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGACTAATATTTTTACAAAATGTTATTAAAGAAGCATCAAGGTTTTAAAAACGAATGCTAATAGAACAACTGGAGAACTTCTTGGATGAAATTCATCGAAGAGCCAATCAGATCAACCATATTAATAGCAATTAAAAGAAAATAGAATGTGGCCACTTCACTATCTTCTTCAAATACAAAGTAAATACAAGACTGTTGTGATCTTGCATTCATTTTCTGACATGCATTGTCGGCTATTTGAAATACTAAAAGCAAATCTACAGATCATTTTCCGTCATTTTACAGTGACCTTTTCTTCATTTTGGTTTATTTTTGTAATGTGAAAAGTATCACTCTAAAAAACATTTTTATTTAACAAACTGAAAATATTCCTCCAAAG |
>XM_011535041.2 |
CCCACCTCGCGGTCCTTCCGCAGTCCGGCCCCGCCCCTTCCCGAAGCCCGCCTCCGGGTCGGCCCGCCCGCCCGCTCGCGCGCACCCGACGCCCCGCCTCTGCGCGTGCTCAATAACTGTCCCCGGAGCCGGCCTACAAGCTTCCCCCGCCCCTGAGCTGTTTAAATATGCTAATGAAAGGATAGGGCCTGACCAGTAGAACGGCGAGGCGGTGTATCACGTGGCTCGGGGACGTGTCAGGGGCGGAGCCTCCGCAGCCCCTGCCCGAGTTAAAACCGGAGTGTGAGAGAGAAAAGCGCTTCAGTAGCGAGAGGGGCTGAGAAAGTGGTGACACCGCCGGGGTGCGGAGGGAGTCCCTGAAACTTctcccaacagccccagggccaatcttccctcagcccactcccctcttcgccagctcccaggtccccactccTGTACCGGGGGTGGGGTGGGGAGCCAGGCCCGTCTCCCGCTGGGACACACACAGGGGCCGGGAGCGGGGACGGGACCCCCGAGGCGGGGGGGACGAACCGACAGACAGACGGCTGGGCGCCCGCCCCAgcgggcaggcaggcaggaggaggcggaggcgggGGTACGACGGGGAGCACTGGGTCTGGGGAGTTTCCTCTCAACTATCGGGGGAGAAACTCCCCGCAGCCGGAGGAAAGACCCAGACAGTGTTTTCCTCCCGGGGGCCGTGCTCCCCCGCCCCGCGTAGCGGCGGTCGccgccaccggcgcctccacctctaccatctcctctttctccaccaccTCGGGCCCCGGTGTCCCCGGCCAGCACTATGCCCATCTTACTGTTCCTGATAGACACGTCTGCCTCTATGAACCAGCGCAGCCATCTGGGCACCACCTACCTGGACACGGCCAAAGGCGCGGTAGAGACCTTCATGAAGCTCCGTGCCCGGGACCCTGCCAGCAGAGGAGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTATGCTATCAAGGCTGGATGGAAAGAAAACCATGCAACGTTTATGAATGAATTGAAAAACCTTCAGGCTGAAGGACTTACGACTCTTGGCCAATCCCTAAGGACAGCTTTTGATTTATTAAATTTAAATAGATTAGTAACTGGCATAGACAACTATGGGCAGGGAAGAAACCCTTTTTTCTTGGAGCCAGCAATAATTATCACAATTACTGATGGGAGCAAGTTGACTACCACCAGTGGAGTCCAGGATGAGGCCGTTCATATTCTGTGTGTTCTCCAAGAATGCTTAATCAGTGTCTGGAGTCCTTGGTGCAGAAAGTACAAAGTGGGGTGGTAATAAACTTTGAAAAAGCAGGACCAGATCCTTCCCCTGTAGAAGATGGGCAGCCAGATATATCAAGGCCTTTTGGATCTCAGCCTTGGCATAGCTGTCACAAACTCATATATGTCAGACCAAATCCTAAAACTGGGGTTCCTATAGGTCATTGGCCTGTTCCAGAGTCTTTTTGGCCAGATCAAAATTCGCCAACACTACCACCTCGTACATCTCATCCTGTAGTGAAGTTTTCCTGTACAGACTGTGAACCAATGGTTATTGATAAACTTCCTTTTGACAAATATGAGTTGGAACCTTCACCACTGACTCAATTTATCCTGGAAAGGAAATCTCCTCAAACATGTTGGCAGGTGTACGTGAGCAATAGTGCAAAATACAGTGAACTTGGTCATCCTTTTGGTTACTTGAAAGCCAGTACAGCACTGAACTGTGTCAACTTATTTGTGATGCCTTACAATTATCCAGTCCTTCTTCCCCTCTTAGATGACTTGTTTAAAGTGCATAAAGCAAAACCAACATTGAAGTGGAGACAGTCATTTGAAAGTTATTTGAAGACAATGCCTCCCTACTATCTTGGGCCCTTGAAGAAAGCTGTTAGGATGATGGGAGCACCTAACCTAATAGCAGACAGTATGGAATATGGACTTAGTTACAGTGTCATTTCATACCTCAAAAAACTGAGTCAACAGGCCAAAATAGAATCTGATCGAGTCATTGGATCTGTAGGCAAAAAAGTAGTACAGGAGACTGGAATAAAAGTCCGGAGCCGATCACATGGTTTATCAATGGCATATAGGAAAGATTTTCAACAACTCCTCCAGGGAATTTCAGAGGATGTCCCTCACAGACTGCTAGACCTTAATATGAAGGAATACACTGGGTTCCAAGTTGCTTTGCTGAATAAGGATTTGAAGCCACAGACATTTAGAAATGCTTATGACATACCAAGACGAAATCTTTTGGATCACTTAACAAGAATGAGATCTAATCTTTTGAAGAGCACTCGCAGATTTCTGAAAGGACAGGACGAAGATCAAGTGCACAGTGTTCCTATAGCACAAATGGGGAACTACCAGGAATACCTCAAGCAAGTACCTTCTCCACTAAGAGAACTTGATCCTGATCAGCCACGAAGGTTGCATACATTTGGCAACCCCTTTAAGCTGGATAAGAAGGGTATGATGATAGATGAAGCAGATGAATTTGTGGCTGGACCTCAAAATAAACATAAACGACCCGGAGAACCAAATATGCAAGGGATCCCTAAAAGACGTCGGTGTATGTCTCCACTACTAAGAGGCAGACAGCAGAATCCTGTTGTAAACAATCATATTGGGGGAAAAGGACCACCTGCACCTACAACTCAAGCACAGCCAGATCTTATTAAACCTCTTCCTCTTCATAAAATTTCAGAAACCACTAATGATTCGATAATACATGATGTGGTTGAAAATCATGTTGCAGACCAACTTTCATCAGACATTACACCAAATGCTATGGATACGGAATTTTCAGCATCTTCTCCAGCCAGTTTACTGGAACGGCCAACCAATCATATGGAGGCTCTTGGTCATGACCATTTAGGAACCAATGACCTCACTGTTGGTGGATTTTTAGAAAATCATGAGGAGCCAAGAGATAAAGAACAATGTGCTGAAGAGAACATACCAGCATCTTCACTCAACAAAGGAAAGAAATTGATGCATTGCAGAAGCCATGAAGAGGTCAATACTGAACTAAAAGCACAAATAATGAAAGAGATCCGAAAGCCAGGAAGAAAATATGAAAGAATCTTCACTTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGACTAATATTTTTACAAAATGTCATTAAAGAAGCATCAAGGTTTAAAAAACGAATGCTAATAGAACAACTGGAGAACTTCTTGGATGAAATTCATCGAAGAGCCAATCAGATCAACCATATTAATAGCAATTAAAAGAAAATAGAATGTGGCCACTTATTTCACTATCTTCTTCAAATACAAAGTAAATACAAGACTGTTGTGATCTTGCATTCATTTTCTGACATGCATTGTTGGCTATTTGAAATACTAAAAGCAAATCTACAGATCCTTTTTCCATCATTTTACAGTGACCTTTTCTTCATTTTGGTTTATTTTTGTAATGTGAAAAGTATCACTCTAAAAAACATTTTTAATTTAACAAACTAAAAATATTCCTCCAAATCTCTTGCTTGTCATTGACTCTTGCGTGTCAATTTCCCTCAGGTTCTATTTTCTTAAACCAACCTTTAAAATTGTCACCTCTGTTAAGGTTGAACTTTGCCAAAAAAAAAAGAAGTTACTTTGTAATTTTTGGGGAAAAAAGCACATACATTAAAACTAGGTAATGTTTTGTATATACAGTTATTTTGGATATATTATTGTAAGTTGTACAAATGTATTTTGAAGAATATTTAAGAAAAGCACTTTTGTTATTCCATCAATAAATGCTCTATTTTACTCTTGTGTGGTTTAGGAAATAATCACATTTAAAGTAATCATTTAAAAACATCCTAAGATAATGGAATTTTAAAGGCCTTGCTTTTTAGCATTGGAAAAATACACCACTTGAAGTTCATGTTTGTTAAGCCTAACTGTAATTACATGTTACATAATCTGCATTGCCTTTTTACTATATGTTCGTAGTTTTTGTTGGCCATGCCAACATACTCCCATTTCTGCCTAGATTATGGGAATGACTTTGTATGGGGCAGATAGACAGATACTTTAAAAGCTATTTAAAAAGCAAACAACTTTGGATATTATTGGTTTCCTTACTTCAACACCTTTTCCTTTATCACTAGGATTGTGGATGGCACGAAGCTGAAGCTGTTAGGGAGTGGTAGGTTTGGAGTACAGTACATGCTCTGAAATATCTAGCCTTTAGCAGCTTCATGCCATGCTTGCAAAAGCCCACAACAAATTGGAGGCCTCCTTGTTCTGCTCTGCTGTTCTCACACTTAAACTCTGTTTTATTTATAAGCTAAATGGAAAGGAAACACCTTTAAGATGACTTTGCTCATTTTGCATCCCCCCTGAGTTTCACAGGATAAGGAAAACCACGCTATTCATTCTCCACCCTCAATTCAACATGGCCTAGAGTATCCGTACTGAGGAAGCAATCTTATGGCCTGACTCACTCACCATTCATGATCACTGCTGTGCCTTTTAGTGGTTTGGGGGGTAAGCAGTAGAAAAGAAGGTCAAAATAGATTTGGATTAAGAGTAGGCAAAATAAACTTATAACATTTAAAAACTGAAGTATTTTTAGGTTTATAATATTGAAAATCACATACCCTTAGCTTTTTACACTTTATCAGACATTTTTTTAAATTTCAAGGGTATAGCAAAATGAAATTATAACTTTATGAAGAAAAGCATTGATGAAAGTGGAGAACATGCATTTAGTCTAGGGGATTTGAAACTCTCCCAATACTGAAGACAAACCCTGTCAAGAAAAAGAAGAATTTAATATTATATAGTATTTTCATATGCAGTTCTTTAAGCTTTGTTTACTTCTATACAAATACTTTTAAGTAATGCAAGATAACATTTAATAGATGGAATTGTTAAGGTAATTGCCTGTAGTCACATTGCTAAATTCATTGAGAGTTACACAAAATCCAGAATATATTGTCTGTTCCTAAATTATATATATTTAGATTCTGGAATTActaggaggaattagaagtcattcagataaaaattcatacttaacaagagtatctaggaaagagattcagcccatcccaatattgagcagctttccttatcagaaagttttattttctgtttcacagattgctcatgACCTTTAATACATTTTTCTGAATGAACCCTGGAGGGAGGTGAGAAGTAGCAGTTTTGTTCATCTCTTCTTTTTGTCCTTTATCTCTCTGCCACTGTTCTCACCTCATCCTAAAACCTGGTCAGGAGGGTTTGAAACCTATCAGAACTAAAGGTTAATATCTCATCTCCCTCAGGCTTTTTTCATTTAAAAAAAAAATGGGTATATTAGTTAAATTAGAATACTTGTTGTAGAATTATTGTCAAAGGGGAAGGGAAATACATCTAGGGGAAACATCATGTCTTTTAGGCCCTTTATGTCACTGAATGACTTAAGGCTCGACAAATGATATTCTTGGAAAGTTTAATCTTGAGGTTTTCAAATCTTTTTTTTTAATGTCTCCCATGTTTCTCATTTGCTGATTGATTCATTAGTTGCTCTTAGTAAGATTTGTCAGTTGGAAATAATGAAGGCTGAGACTCATTTCTAAACTCTTCCATAACCATCACCAGAAGAGCAGCCACTGTGTTGTGTGATGTAGGCTAATGCCTCCCAGATAGAGGTAAAGTCACAAGGACTATTAGAATTCCAGTGGATTGTGGAACTGGTTTTGGATTATCCTTATATTTTCATTCTGATTACTGAGGCAGTTCTGAAAACTCCTACCATTGAAATAGTGGTGTGTCTTTTCCTTGTTTAAGGATTTTACATCATTTTTATGCACTTGAATTCCAAAATCAGAATCTCTCTTTTACCTATCAACCTTTATTGGCTATTGGCTTTTGGCAATGACCTTTCTGTTCAAATGTAGTCCTGTCTCTTTGTTTCCTTAGGGAGTAGAACCTGTCCTTTTTCTCATCTTTCATTTTTTTGACGTGTCCTTTCTAAGAGAAGGCTCTCTGCCGCCTGTTCTGGGTGATAAGTGATATTTTCATCTAATCGTTATGTGGTTGGGATGATCATGGTGAAATACTAGGAAGACATACTCTGTTGATGGACTTTTTCTCTCCAAATAATCCCAAATAGATTATTTTCTAGTGAATGGTTTATATCTTTCTCGTCACAAAAATGTTCCTTTGATTTCTAGCACAAGGTACAGCAGGATGCAAATGATTCTCAGATAAAATGATGTTGACAGTATTTCCTTAACAATTTATGTAAAACTATGCATAATTTTCATTCTAACTTTTGACATTTTTCTCCATAAATAAAAGTAATGCCTGATGTTTAGTTAAAGTA 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