Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GNL3LP1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:60891801-60893519  UCSC
Coordinates (T2T) chr5:61708185-61709903  UCSC
Coordinates (hg19) chr5:60187628-60189346  UCSC
Strand -
Parental Sequence NM_001184819.2
Parental seq. overlap 1558 bp
Parental seq. overlap (%) 17.9%
Genomic Region Intragenic (ERCC8)
Retrocopy Summary GNL3LP1, located on chr5:60891801-60893519, is a retrocopy of the parental gene GNL3L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GNL3L
Full Name G protein nucleolar 3 like
Also known as GNL3B
Coordinate chrX:54530219-54567289
Strand +
Gene summary The protein encoded by this gene appears to be a nucleolar GTPase that is essential for ribosomal pre-rRNA processing and cell proliferation. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, May 2010]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus GNL3LP1
Gorilla Gorilla gorilla GNL3LP1
Orangutan Pongo abelii GNL3LP1
Gibbon Nomascus leucogenys GNL3LP1
Green monkey Chlorocebus sabaeus GNL3LP1
Crab-eating macaque Macaca fascicularis GNL3LP1
Rhesus Macaca mulatta GNL3LP1
Baboon Papio anubis GNL3LP1
Golden snub-nosed monkey Rhinopithecus roxellana GNL3LP1
Marmoset Callithrix jacchus GNL3LP1
Chimpanzee Pan troglodytes Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GNL3LP1
AGCCTGCAAAACAAAATGGGAAGAAAGCAACCTCCAAAGTGCCCTCTGCTCCTCAGTTTGTTCACTCCAATGATCATGCCAATCGAGAGGCTGAAATAAAGAAGAGGGTTGAGGAGATGAGGGAGAAGCAGCAAGCTGCCCAGGAGCAAGAAAGACAAAAACGCAGGTCTATCAAGAGCTACTGTGAGGATATCCTAAGACGCCAGGAGGAGTTTCAGTGTAAGGAAGAAGTTTTGCAGGAATTAAATATGTTTCCTCAGCTGGATGACGAGGCCACTATGAAGGCTTATTACAAGGAGTCCGTGAGGTGGTAGAATACTCTGATGTGATTCTGGAAGTCCTGGATGCCAGAGACCCATTAGGCTGCTGCTGCTGCTTCCAAATGGGGGAGGCTATCCTATGGGCAGAAGGCAACAAGAAGCTGGTCCTGGTCTTGAAAAAGATTGACCTGGACCCCAAGGAGGTTGTGAAGTGGCTGGATTACCTTCGGAATGAGTTGCCAACTGTGGCTTTCAAGGCCAGGACCCAGCATCAGGTCAGCTTTGGAGCTGAAAACCTCATGAGGGTTCTGGGGAACTATTGCTGCCTTGGTGAAATGCGCACCCACATCCATATGGACATTGTAGGCCTTCCCAATATTGGGAAAAGCAGCCTGATTAAAAGCCTGAAGCACAGCCATGCATGCAGTGTGGGAGCCATTCCTGGGGTCACGAAATTCATGCAGGAGGTCTACCTGGACAAGTTCATCCGGCTGCTGGATGCTCCAGCCATTGTTCCAGGGCCCAGCTCAGAGGTGGGCACCATCCTGCATAACTGCATCCACATCTAGAGACTGGCAGACCCCATGACCCCAGTGGAGACCATCTTGCAGTGCTGCAACCTGGAGGAGATTTCCAACTATTACCTTCTCTCTGGGTACCAGACTACTGAGCACTTTCTGACAGCAGTGGCCCACCATTTGGGGAAGAAGAGAGACTTACACAGTCAGGAGCAGGCAGCCAAAACTGTCCTAGCTGACTGGGTGAGCGGGAAGATCAGCTTCTATAGACCACCACCACCCACTCACACTCTGCCTGCCCATCTCAGTGCTGAGAATTAAGGAAATGACCAAGTTCTTTGACATCGAGGATACCGAGCAAGTCAATGAAGACACCATGGAATGCTTGGCCACTGGAGAATCTGATGAGCTATTGGGTGACACAGACCCACTCAAAATGGAGATCAAGTTGCTCCATTCTCCGATGATGGAAATAGCAGATGCCATTGAAGATAAAGCTACTGTATATAAGATTGGAGATCTCACTGGTTATTGCACCAATCCGAATCGTCATCAGATGGGGTGGGCTAAACTCAATGTAGACCACCACCCTAAAAAAAAACAGTAAGGTGGATGTGTGCCCAGTGGACTGCTGCCCAGTACTGCAGAGGATCATGGAGATGGACCCCCTACAACAGGGCCAGGCTCTAGCATCCTCCCTGAAGAGTAAGAATTTACAGAAATGTGCAGATAAAATCCCCAGGGAGCTGTCTGATTCCATGATGTCTGCCCTCCACCTCTCTGGCAATGCTGATGGCAGTGTTGGTAACTAATTGACTGATCTCACTTCCCTTCCGATCCAAGCACCAGTTCCAGTGGGACGGGAGATTACCAGTGAAATAGTTTGGTTCTCCCTGAAGCATCTGCATATTAAAAGAACCCTTCCCCAACTATGTGTCTTT
>NM_001184819.2
AGTCGGAGCCTAGCTGCGCGAGAGTTTCTGCTCGCTCAACCGAGTTGTCGTGTTGCCCTCGCTTCTCAGATCCCCGCCGGAAGTGTAAGTAAGAAACTTCTCTCCTCTTTTCTCACAATGTGCGCTCACCTAGACGGCCGGGCAGTTAGGATCGTCTATTGGATGTGAAACCAGAGATGCCCGCCAACCTGGAATAGAGAGGAAGAGAGCAAGCAGATTTGAACCTATCTGCTTTCAAGCTGGTCATCATGATGAAACTTAGACACAAAAATAAAAAGCCAGGTGAAGGTTCCAAGGGCCACAAGAAGATAAGTTGGCCCTACCCTCAGCCTGCAAAGCAAAATGGGAAGAAAGCAACCTCCAAAGTGCCCTCTGCACCTCATTTTGTTCACCCCAATGATCATGCCAATCGAGAGGCTGAATTAAAGAAGAAGTGGGTTGAGGAGATGAGGGAGAAGCAGCAAGCCGCCCGGGAGCAAGAAAGACAAAAACGCAGGACCATTGAGAGCTACTGTCAGGATGTCCTAAGACGCCAGGAGGAGTTTGAGCATAAGGAGGAAGTTTTGCAGGAATTAAATATGTTTCCTCAGCTGGATGACGAGGCCACGAGGAAGGCTTATTACAAGGAGTTCCGTAAGGTGGTGGAATACTCTGATGTGATTCTGGAAGTCCTGGATGCCAGAGACCCATTAGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCTGCGAGCACAAGGCAACAAGAAGCTGGTCCTGGTCTTGAACAAGATTGACCTGGTCCCCAAGGAGGTTGTGGAGAAATGGCTGGATTACCTTCGGAATGAGTTGCCAACCGTGGCTTTCAAGGCCAGTACCCAGCATCAGGTCAAAAACCTGaatcGTTGCAGTGTGCCAGTAGATCAGGCCTCTGAGTCACTGCTGAAAAGCAAAGCCTGCTTTGGAGCTGAAAACCTCATGAGGGTTCTGGGGAACTATTGCCGCCTTGGTGAAGTGCGCACCCACATTCGTGTGGGTGTTGTGGGTCTTCCCAATGTTGGGAAGAGCAGCCTGATCAATAGCCTGAAGCGCAGCCGCGCATGCAGCGTGGGAGCTGTTCCTGGAATTACCAAATTCATGCAGGAGGTCTACCTGGACAAGTTCATCCGGCTCTTGGATGCTCCAGGCATTGTCCCAGGGCCCAACTCAGAGGTGGGCACCATCCTGCGTAACTGCGTCCACGTGCAGAAGCTGGCAGACCCTGTGACCCCAGTGGAGACCATCCTGCAGCGCTGCAACCTGGAGGAGATTTCCAACTATTATGGCGTCTCTGGGTTCCAGACCACTGAGCACTTTCTGACGGCAGTGGCCCACCGTTTGGGGAAGAAGAAGAAGGGAGGCTTATATAGTCAGGAACAGGCGGCCAAAGCTGTCCTAGCTGACTGGGTGAGCGGGAAGATCAGCTTCTATATACCACCACCAGCCACTCACACTCTGCCCACCCATCTCAGTGCTGAGATCGTTAAGGAAATGACCGAGGTCTTTGACATCGAGGATACTGAGCAGGCCAATGAAGACACCATGGAATGCTTGGCCACCGGAGAATCTGATGAGCTGTTGGGTGACACGGACCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGACGAAAATAGCAGATGCCATTGAAAATAAAACCACCGTGTATAAGATTGGAGATCTCACTGGGTATTGCACCAATCCGAACCGTCATCAGATGGGGTGGGCTAAACGCAATGTGGACCACCGCCCTAAGAGCAACAGTATGGTGGATGTCTGCTCAGTGGACCGCCGCTCAGTGCTGCAGAGGATCATGGAGACGGACCCCCTGCAACAGGGCCAGGCTCTGGCATCTGCCCTGAAAAATAAGAAGAAGATGCAGAAACGTGCAGATAAAATCGCCAGCAAGCTGTCTGATtccatgatgtctgctctcgacctctctggcaatgctgatgatggtgttggtgactaatcgactgatCTCACTTCCCTTCCGCTCCAAGCACCAGTTCCGGTGGTACGGGGGAATACCAGTGAAATAGTTTGGTTCTCCCTGAAGCATCTGCATATTGAAAGAACGCTTTCCCCACTGTGTGTCTTCTCCCCCTCCTCCAGTAAAAACAGTCCCggctaggtgctgtggctcacgtctgtaatcccagcactttgggaggccgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaaatttagccgtgcttagtggcacctataatcccagctacttgggaggctgaggcaggagaatcgcctgaacctgggagactaaggcaggagaatcgcctgaacctgggaggcagaggttgcagtgagcccagacggcaccattgcactctagcctgggcaacaacacgaaactccgtcccaaaaaaaaaaaaaaaaaaaaaaTCCCAAGGGGCTGCAGCTGCCAAACCCAATACCCTCTATTTAACCCCTACTCTGTTTTACAAGAGAAATAAAAGAAGTATCAGCAGAGCTCAGGTGCTAACACCTGTTGAGGGCTGACCTACAAAACTCTGCCTACAAAACTCTCTTAGACAGGTGAATATGCCACTAGAAGTTAGGTTGCTGGTAGACCTGGGGGTCCCTGCGGGAGGGTGATGGTTTCTTTACCACCCCACAGGAGATTTCAGTGGCAAGGCATGCCTGCAGTGGGCTTTGGGCCATGCATCTTCCAAGTCCATAGGTCTTCACCTGGGTGGCAGTGAGAAAAAGTAGAAAGTAATGAGCCTCCTGTGTCTCTGGAAGGTTCTAGGGATAGGGTAGAGGGAAGAAGAGAACAAACAAGCCTGGCTTGTGCTGAAGTGTGGTAGGCACTACCCTGTTTGCGTGAAGAGAAAACAAAGCACCTGTTAGTAGGGAGGCTTTAGGGGGAAGCCCCGTCTTGGGGGCATTTCTGGGCAGATTGTGAATTGGAGGAATCTCTTTAACTGAAGTACTCTGGCTGGACCCTGCCCTTGTGTGACCATGTCTCCTATTGCACCAGCATTTGAATTCCATGGCTCAAGAGGGTTCTGGTACCATTTATTCACAGACTGTATCCTCGAGAGAGCTGCTATATATGGGAGTGTACCAGCCAACTCCTTTTCCAGTGTCTGTAAGTCACCTCATTAAAGTATAATTAGCTGTCTCCTCTGGGAGATCCTACCCCATCAGACAAGGGCAGTGAGCCCAAGCAGTGCCAGAGGCCCTCAGAAAGGGATTAGGGTAGATGATTGCAACTGAAACACAATCTTCTTTCTTTGCCAGGGTATTTTGGGGGTTTTGCCCCAAAATATACCCTGGGCATAGCATTACTGCAGTCTTGGATGTCTACCCCAAACTTCCACACCATCCTTCGACCCACAGCTGCACCTTTATTTATTTAttttgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagtgatcctcctgccttagcctcccaagtagctgggattacaggcacctgccaccacgcctggctagtttttgtatttttagtagagacgatgtttcaccatgttgaccaggctggtctcgaactcttgacctcaagtgatccactcgcttcggcctcccaaagtgctgggattataggcgtgagccactgtgcccagccTCACAGCTGCATCTTAACCTTACCTTTGCCTCTGCCTCTCAAGCTGGTACCTCCTAATTTACATCCTAAGAGTGGAACCATGTGACAAGGACTGGAGTGCCATTGGCTGTGGACTGTTCAGGCAGGGAAGTACAAGACCACTCTTGTATTCAGGGGCAACCAAAGGAGAGAATTACGTACTTGTTGAGTACAAACTGCACCAAGCCCTGGAGACCCATTACCACCGTTAACCCTCAATACAGCTCTGCTAGTAAGGGATTCGTCTCCCCAAATGAAAAAAAAAAGTAATCTCAGAATGttggccgagcatggtggctcacacctgtaatcccagttatgcaggaggctgaggcaggagaatcacttgatctcaggaggcggaggttgcagtgagtcgacatcacaccactgcactccagcctgggggacagagtgagacttcgtctcggaaaaaaaaaaaaaaaGTTGACAGGATGGCCAGACCCAAGTGGGCGtattaagtggtggtgctaggattggaacccaagcgtgattaaaaccctatgcaggccctttcctctatattgtactgcctcCTTAACAAAGGaagattgattaagcccctactttgtgccagtctctgttatcaagtccgttaaatgcattTAACGTTAAATTTTTTCTTTTTTGGTTTAAAAAACTCTAGTTTCTTAAACTACTAGTTTTTAGTGTCTTGCTAAAACTATGTGCTCTTGAATAGGCTACAACTTATTTCACACTATCTCATTGAACTCTCCTGGTATGTGATAGTGTTATAATGAAAAATTGCATACCAGGACAGCTAAGTCTATTTTGCAACCATACAGCGTTTCATAATTTAGCATTTAAAATAcagacagtccccgacttttggtggtttgatgtgggatttttggtggaaaagcagtatacattcagAATGCACCTCTACTTATGATGGGGCTACTTCCTGGTAAACCCATTGTAATGTGCAAATTACGGGTTTATCAGGAGGTGACCCCATCGGTAATGGAGAAGTGCTGGGAGGTAAATATTAGAAATGGAAGTATCTAAATGAGTAAGAAACAGCATGGGAGCATAATTTGGCCAAAATCAAACAGAACTAAAGTAGTCATGTCGGTAAGAATTTGGGACTGCAggccagttacgatagctctcacctgtaatcccagcattttgggaggccgaggcaggcggatcacttgaggtcaggagttcaagaccagcctaaacaatatggcgaaacctcatctctaccaaaaaaatacaaagattagctgggcatggtgtctcatgcctgtagtcccagctacctatggggctgaggcaggaggatctcttgagcccaggaggtcgatgctgcattgagccgagattgtgccactgctctccagcgtgggcaacagagtgagactgtctcagggggaaaaaaaaagaggaaaacaaaaaaGACGTTGGGAGTGCAGTTTCTCTACCTACAGCATATCTCAAAGGTTTTTTTTAAAAAAGTATTTTCTTAACTTTTTACCTTCAtttttcaaaacaattagggtacaatttacatatagtaaagttcactctttatagttttagttatgtgagtttgtacaaacatatacaggagtgaaccactaccacaatcgaaatatagttgcatcacccccctaaaactctccaggcccttttgtagtcaactcctacccccgaccctcagattctgctaaccactgatttgttttctgcccctatagttttgctttagtatgactgtcatatcaatagaatcatacaatgagtaggcttATTTTATGCCTTCAGGTTTTAAAAATTATAAACatttacattacagtaaaattcactctggtatacagttctataaagctctgataaatgtgtagagttgtgtaaccaccaatgcaaccaaggtacagaacagtcctcttagcctctccctaccaaatttattcctgctactttgtagtcaaaaccagtcccctacacccaaaccctggcagtcactggtttttttcttcgttctcttttttttttttttttttttgagacagagtctagctctgttgtccaggctggagtggtgcagtggcgtgatctcggttcactgcaacctccgcctccagggttcaagcggttctcctgcctcagcctcccgagtagctgggattatgggcgcccgccaccacgcccagctaatttttgtatttttagtagagatggggtttcactgttttggccaggctggtctcgaactcctgacctcatgatcctcctgcctcagcctcccaaagtgctgggattacaagagtgagccactgcgcctggcctttttctttgttcttatatttttgtcttttttttttttttttttttgaaacagagtctcactctttcactgaggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgccttagcctcccgagtaacagggactacaggtgcccaccaccatgctgggctaatttttgtatttttagtagaggcgggggtttctccacactggccaggctggtcttgaacttctgacctcaaaagatccacccacctcggcctcccaaagtgctgggattataggcatgaaccaccgtgtccggccatatattttcgtcttttgaagactgttatatacatgaaattatatggtatgtagcattttgagagcgacttcttttgctatgagtaatacatttgagattcatccatatttctcagtatattaatagttcttatttctgagtcactccattgtgtggatttactactgtttgttccccagttgaaggatgtttaggatctttgcagttttggacaattacaagtaaagctgctataaacatttgtatgcaacattttgtgttttcatttatctatagtaaatacctagagttggattgctgggatatatggtaagcatatgtttgacattttaagaaacttctaaactgtttttcaaagtggctctaccatttcacattcccatcagtatgaaagtttcatttccacatcctctctagtacttgggggtgtcagtttagttttttaatttttaaattttttaatttttttaatacatttaaatagagatggggtctcactgtgttgaccaggatggtcttgaactgctggcctcaagtaatcctcccatctcggtctcccaaagtgctaggattacaggtgtgagccaccatgcccagccaggttttttgacattaagtatgtggtggtatctcatcgtttttatttgcatcctctaatgatttgagcatattttatatgcttatttgctatctacatatcttctttggcaaggtgttcacatctcttgcatattttggattgttttattatttttgaattttgaggattatatgctggatacaggGGTGtttttttttttttttttttttgaaacagagtcctcacccaggttggagtgtagtggtgcaatctcggctcactgcaacctctgcctcctgggttcaagtaattctcatgcctcagcctcctgagtagctggaattacaggcgcaggccaccatgcttggctaacttttatatttttaccagagacaaggtttcaccatgttggcaaggctggtcttgaactctggacctcaagtgatacacccgtcttagcctcccaaagttctgggattacaggcatgagccattgtgcctggccAGTATCTTGTCTTCTCATTCTGTAAACGGTGTCTTTTTTTCATTATGGGAAAGCTTTATTGACACATTTGTTTTTATTTTTAAAAATTATGGTAAAATACACAGAACATAAACGTTACCATCtgatatggtttggctgtgtccacacctaaatctcgaattgtagttcccataatccccacACatatgtaccacattttctttatccagtctttcgttgatagacatttaggtcgattccatgtctttggtattgtgaatagtgctgcagtgaacatatgtgtgcatgtgtctttatggcagaatgatttatattATGCATaaccaaaactgtacttattaaacaataacctcccaaccccttctgcccacaacctctggcgactgccatgctactttctgtctctgaatttgaataccctgatagtcatataatatttatctttttgtgactggcttatttcactttgcataatgtattcaagcttaatctgtgttgtagcctgcgtcagaatttcttttctttttaatgctgagtattattctattgtgtgtatataccacattttatttatccattcatccactgatggacatgtgcattgttcccaccttttggctattgtgaaaaatgctgttatgaatatgggtatggagatctctCCCCTTAttttgagacaggatctcactgtcacccaggctggggtgcagtggtgtgctcataggtcactgtagcttcgacctcctgggctcaagcgaacctcccacctccgcctcttgagtagctgggaccacaggcatgtgccaccatgGCTGTTAaatttattaatttgtttttctatggatcatgctttttgtgttacatcagaggagtctttgcttaacatgagatgacaaaggttttctcccatgtttcctcctaaaagttttatagttttaggttttacatttaggtctatgatccattttgagtcaatttttgtatatggtacaaggtatgaatctatgctttttaaaaaaatatggttacccaatttttctagcagtatgtgctaaaactttgctaaagtcacttagttctagtagctttttttgcagatttaaccagactttctacatagacaatcatatcttctgtgaataaacatggttttatttcttcatgtctaa

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