Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name R3HDM2P2
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:104017380-104019781  UCSC
Coordinates (T2T) chr6:105192870-105195271  UCSC
Coordinates (hg19) chr6:104465255-104467656  UCSC
Strand -
Parental Sequence NM_001351211.2
Parental seq. overlap 1918 bp
Parental seq. overlap (%) 41.9%
Genomic Region Intergenic
Retrocopy Summary R3HDM2P2, located on chr6:104017380-104019781, is a retrocopy of the parental gene R3HDM2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name R3HDM2
Full Name R3H domain containing 2
Also known as CAG6|PR01365
Coordinate chr12:57253764-57431043
Strand -
Gene summary Enables RNA binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes R3HDM2P1
Bonobo Pan paniscus R3HDM2P1
Gorilla Gorilla gorilla R3HDM2P1
Orangutan Pongo abelii R3HDM2P1
Gibbon Nomascus leucogenys R3HDM2P1
Green monkey Chlorocebus sabaeus R3HDM2P1
Crab-eating macaque Macaca fascicularis R3HDM2P1
Rhesus Macaca mulatta R3HDM2P1
Baboon Papio anubis R3HDM2P1
Golden snub-nosed monkey Rhinopithecus roxellana R3HDM2P1
Marmoset Callithrix jacchus R3HDM2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>R3HDM2P2
ACTTTGTGCTCTCCCACCCACGCCTCAGCAACAGCCACCCTTGAATAATCACATGATCTCACAGACAGATGACCTCAGCAAGTCCTTTAGACAAATGAGCCCTAGCTGCCAAGGTTCTACTAAAGCAACTGACTGATCGGCAGCTCTGTTCCAGCCCCCACTCATCTCCCAGCACCGTCAGTGGACTAACTTCGTCATGGCTTCCATGGGTCAGTCCCTCCCCACCTCTAACTGTTCCACCTCTAGCCATGCACCACCTACTCAGCAAGTGCTGCTACCCCGGGGCTACATGCAGCCTTCTCAACCAACAGTTCCAGGTTTCTTTCTAATCCCCCTGGACAATATCCTAATTCCAACCAGCAATATTGACCTTTCTCTCACCTGGTGGCCTACAGATCCTGATGTGGTCAATAGCTGGCTCGGCCATCCCAGCAGCCCAGTTTATAGCCCATGATGCCTAACCAGCAGCAGGTGGCTTACCAAGGAATGACTGGGGTCCAGCAGCCACAGAACCAGGGCCTGCTCAGCAGTCAGAGAAGCAGCATGGAGGCCCAGATGCAAGGCCTGGTGGTTCAGTACACTTCACTGCCTTCTTACCAAGTCTCAGTGGGTAATTACTCACAAAATGTGGTCCAGCACCCTTTCTAGCAACTCATGCTGGCCCCTGTGAGCCAGTTTGGGTAAGGAGGCCCCCCAACAGGGGGCATACCAGTGTACTACAGCATGATCCCACTGGCTCAGCAGAACGGTACAAGCCCTACTGTTGGGGTTTTGCAACCTCCTGGGTCTCAGCAGTACCAGATGATTCAGTTTCCCTCTCCCTGCCGTCTACCACAGATGCTGCAGTAGCAGTCAAGAGTGTCACCTTCTGGACCAGGTGTGGTGGTCATGAGCTGAATTTCGCTAATGGAGCCTGACCCCACTCAGAACCCATCAAGGGTCCAGTGGAGTCACTGTAAATACTACAACATGGACCATGAGGGGCAGAAGCCTGGAGACCTGTACAGTCCTGACATCAGCCCCCAGGCCAACATACAAATGAGCAGCAGCCCTGACACATCTCCTACCCAGGCTTTGCCACCTTCTCTTGTCACCAGCCTCAGTGGTGGCTGTCTGCACAGGACTCAGTCCCTTGCTTGTCCTCAGATGGTTCCCCTGGCCTGGGGGTCCAGCACAGGGTGATGGGTGCTACTCCCTCTTAGGCCAGCCTTTAGAGTATAATCTGTCCATCTGCCCTCCCTTGCTGCATGACCAGTCAACTTACACAGTACACCAGGGACAGAGTGGACTGAAGCATGAAAACCAGGGCAAGAGACAAGCACTCAAATCTGCCTTCTCTGACATGGGGACAGCAGATGTTGTTTTGGGGCAGGGGCCGGAGGTAACAGATCTCCCTAAGGGCATCACCTGTACCGAGGCAGACAAACTCTTTAAGCAGCTTGCCATGTCCAGTGCCAAGACCCAGCTCAGGGGCTGCCTGGTGGGGGTGGAGGGGACAATGGTGGGACTGCTGAGAATGGCAACTGCTTGGACCTTGCTGCCTTTTACACCATCATGGCTGTGTTCCCTAACCTGCTGGCTGCTCAAAATGCCTCCCTTCATCTCAACAACTCCCTGAATAGCTTCACACTTTGAATGGCCAAAAAGAACTATGACCTGAGGATCCCGGAGTGAGCCAGCACCCACTAAATGGAGAAGAGGAAGGGAGCAGCCCAGAAGGGGCGGGGGCAGGATAGAGGGTGTTGAAGGATCCTGATAGACTGTGGATGGAGACAGAAAGTAAGGAGACTGACGCTAAACTGGAGCCTAAGACAGTAGTGATGAAGACCGAAACAGAGGGACATCCACACTGGCATTGGATTCCTTCAGGCTCTCCTTCTTTGGGTCCCCTTTTTTCCCCTGGTTGGCCCCTCTGCTTCCTTCTTCTTCCCATCCAGGAAGGAGAAGCAAGTCAATAGAAGAGAAAGGGGACAAATATCCAAGGGTCTGAGAGAATATTTGCCCCCCAAGAGACTGGCCAGAAAGGATATATAAATGACATCAGGAGGAATTGCAGAAGGTTCAGCTGCACCTCAAGCAGCTGCCAGAACAGAACAGTGAACTCAAATCCCTTGGAGCCATGGCCTTGGAGCAGCACGAACGCTGGTGGCTCTGTCCAGAACATGCGACCCTCTGTAACCAAAGCCAGCAGGTTCAGCAGAATCTCTGTCTTCACCCAAGGTGACTGCATTGGCAGCAGTAAATGTGCCAATGCAGGAAGGATCTCCAGGCCAGGTATGGCACTATATGCCCCAGAAATGTGCAACCAGGTCACCTCATCCCAGTCTATCCCGAACCTTCTCCCTTGTTc
>NM_001351211.2
GTGACGTAGCGCGCAGCCGCAGCGGGGGGCGGACTCTGGGCTTTTCTTCCCCTTCTGATTTTCCCCTCCCCCCTTTTCTCCCTTTCCGGGTTTGGTTCCCCCCTTTTCTtcccctctcccccctccttcccaagcccctttcccctcccccgtcccagtcccccCTGCTTCCCAGCCCTCGGCCCCGGGGAAGCCCCGGCCGAGAAAAGCccgcccccagaagcgcgccgccgccggccgtcggggccgagccgcagccgagcggccgtgggcccgggcggcgggcggagacgtgggcGCCCTCCCCGCCAAGGCCCGTGCGAGAGGTTAGACTTGTTTCTTATATGTGATGCCATTCCAGCACTGGACTCATGGAGGCTGAGCATTTATTCAGGAGTCCATAGAGGCCACTGTATTCTATTGAAGAACATGTCTAACAGTAACACTACTCAAGAGACCCTGGAAATAATGAAAGAATCAGAAAAAAAACTGGTGGAAGAATCTGTAAACAAAAACAAGTTTATATCTAAGACTCCAAGTAAGGAAGAAATTGAGAAAGAATGTGAAGATACCAGTTTGCGTCAGGAGACACAGgattatgagttcctttttgacaagAGGCGGACATCTAACCATGGTCATGCCAGGAAAAGAGCCAAGTCTAATTCCAAGCTAAAGTTGGTGCGTAGCCTGGCAGTGTGTGAGGAGTCCTCCACCCCATTTGCTGATGGGCCATTAGAAACCCAGGATATAATTCAATTGCACATCAGTTGCCCTTCTGACAAGGAGGAAGAAAAGTCCACAAAAGATGTCTCTGAAAAGGAAGACAAGGACAAAAACAAAGAAAAGATCCCAAGGAAGATGCTGTCCAGAGACTCCAGCCAGGAATATACGGACTCCACTGGAATAGACCTACATGAATTTCTTGTAAATACACTGAAAAAGAACCCAAGGGACAGAATGATGCTGCTAAAATTAGAACAGGAGATTCTGGAATTTATTAATGACAACAATAATCAGTTCAAGAAGTTCCCTCAGATGACCTCATATCACCGGATGCTATTACACCGGGTAGCTGCCTATTTTGGGATGGACCACAATGTTGATCAAACTGGGAAAGCTGTCATCATCAACAAAACTAGTAACACAAGAATCCCTGAACAGAGGTTCTCAGAACATATAAAGGATGAGAAGAATACAGAATTTCAACAGAGGTTCATTCTCAAGAGAGATGATGCCAGTATGGACCGAGATGATAACCAGATCAGAGTTCCATTGCAGGATGGAAGGAGGAGCAAGTCAATAGAAGAGAGAGAGGAGGAATATCAAAGGGTCCGAGAGAGAATATTTGCCCGAGAGACTGGCCAGAACGGATATCTAAATGACATCAGGGGGAACCGTGAAGGACTGAGCCGCACCTCAAGCAGCCGCCAGAGCAGCACAGACAGCGAACTCAAATCCCTGGAGCCACGCCCTTGGAGCAGCACAGACTCTGATGGCTCTGTCCGGAGCATGCGACCCCCTGTCACCAAAGCTAGCAGCTTCAGTGGAATCTCTATCCTTACCCGAGGTGACAGCATCGGCAGCAGTAAAGGCGGCAGTGCGGGAAGGATCTCCAGGCCAGGTATGGCACTAGGTGCCCCAGAAGTGTGCAACCAGGTCACCTCATCCCAGTCTGTCCGGGGGCTTCTCCCTTGTACTGCCcagcagcaacagcagcagcagcagcagcaACTTCCTGCTCTCCCACCCACGCCTCAGCAACAGCCACCCTTGAATAATCACATGATCTCACAGGCAGATGACCTCAGCAACCCCTTTGGACAAATGAGCCTTAGTCGCCAAGGTTCTACTGAAGCAGCTGACCCATCTGCAGCTCTATTCCAGACCCCACTTATCTCCCAGCACCCTCAGCAGACTAGCTTCATCATGGCTTCCACGGGTCAGCCCCTCCCCACTTCCAACTATTCCACCTCTAGCCATGCACCACCTACTCAGCAAGTTCTGCCACCCCAGGGGTACATGCAGCCCCCTCAACAGATCCAGGTTTCTTACTATCCCCCTGGACAATATCCTAACTCCAACCAGCAATATCGACCTCTCTCTCACCCGGTGGCCTATAGCCCCCAACGTGGTCAGCAGCTGCCTCAGCCATCCCAGCAGCCTGGTTTACAGCCCATGATGCCTAACCAGCAGCAGGCGGCTTACCAAGGCATGATTGGGGTCCAGCAGCCACAGAACCAGGGCCTGCTCAGCAGCCAGAGGAGCAGCATGGGGGGCCAGATGCAAGGCCTGGTGGTTCAGTACACTCCACTGCCTTCTTACCAAGTTCCAGTGGGTAGTGACTCGCAAAATGTGGTCCAGCCGCCTTTCCAGCAACCCATGCTGGTCCCTGTGAGCCAGTCTGTGCAAGGAGGCCTCCCAGCAGCGGGGGTACCAGTGTACTATAGCATGATCCCACCTGCTCAGCAGAACGGTACGAGCCCTTCTGTAGGGTTTCTGCAACCCCCTGGCTCTGAGCAGTACCAGATGCCTCAGTCTCCCTCTCCCTGCAGTCCACCACAGATGCCACAGCAGTACTCAGGAGTGTCACCTTCTGGACCAGGTGTAGTGGTCATGCAGCTGAATGTCCCTAATGGACCCCAGCCCCCTCAGAACCCATCCATGGTCCAGTGGAGTCATTGTAAATACTACAGCATGGACCAGCGGGGGCAGAAGCCTGGAGACCTGTACAGTCCTGACAGCAGCCCCCAGGCCAACACACAAATGAGCAGCAGCCCTGTCACATCTCCTACCCAGTCTCCAGCACCCTCTCCTGTCACCAGCCTCAGCAGTGTCTGCACAGGACTCAGTCCCCTGCCTGTCCTCACACAGTTCCCCCGGCCTGGGGGTCCAGCACAGGGTGATGGGCGCTACTCCCTTTTGGGCCAGCCATTACAGTACAATCTGTCCATCTGCCCTCCCTTGCTCCATGGCCAGTCAACTTACACGGTGCACCAGGGACAGAGTGGACTGAAGCATGGAAACCGGGGCAAGAGACAAGCACTCAAATCTGCCTCCACTGACCTGGGGACAGCAGATGTTGTCCTGGGGCGGGTGCTGGAGGTGACAGATCTCCCTGAGGGCATCACCCGTACTGAGGCGGACAAACTCTTCACGCAGCTCGCCATGTCTGGCGCCAAGATCCAGTGGCTCAAGGATGCTCAGGGGCTGCCTGGAGGGGGTGGGGGGGACAACAGTGGGACTGCTGAGAATGGCCGCCACTCGGACCTCGCTGCCTTGTACACCATTGTGGCTGTGTTCCCCAGCCCCCTGGCTGCCCAAAATGCCTCCCTTCGTCTCAACAACTCCGTGAGTCGCTTCAAACTTCGAATGGCCAAAAAGAACTATGACCTGAGGATCCTGGAGCGAGCCAGCTCCCAATAAATGGAGGAGGGGAAAGGGACTGTCACAGAAGGAGCAAGGGCAGGGTGGAGGGGGTTGAAGGATCCTGACAGACCATGGACAGAGGCAGGAAGTAAGGAAACTGATGTTAAACTGGAACCTAAGACAGTGATGAAGATGGAAACACAGATACCTACACTGGCATTGGACTCCTTCTTGCTCCCCTGCCATGGGTCCTCTCTTTTTCCCTGGTTGACCCCCCTTGCATCACTCTTCTTCCCATCCtcttctttttttttttttttttttttttgagacggagtttcgctcttgtcaccccagctggagtgcagtagcacgatcttggctaactgcaacctccagctcctgggttcaggtgattctcctgcctcagcctcccaagtagctggcactacagacacgcgccaccatgcccggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggctggcctcaaactcctgacctcaggtgatccacctgccttggccttccagagtgctgggattacaggcgtgagccactgtgcctggcTTCCATCCTCTTCTATCATTTTTTTAAATCTCTTCTCCTATCATAAAATTAATTTCTCATTTTTTGGTCAGGTAGAATTGGGAAAGTCCCACACTGTCCTCCTATTACCTTAACATCCCAAGCTTCCTTTCCTTTTTTGGTCTTTATGAATATATTTATATGGACAGAATTAAGATAAACAAAATTGATTGCCCCATTCTCTCACTTCCCCATCTTGTCTTCCTAGACCCCACAGAGTTAAAACTTGGGATTCCCCTGGCCCCCCCAGAACACTTGTATATTGTTTGTTTGAGGTTCGTGCCGCAGTAACAGACACAGTATTTAATTGCACATACAGATGTTTGCTGGGTATATTCACTGTAAATTTTATTTAATCTGTTTTTTTGTTTGTTTGGGGGTTATTTGGGGGGAGGTTGGTTTTGTTTTTAAATATAAAAAAAAAAATCTGTCACTGGA

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