Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name YAP1P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:147406839-147411334  UCSC
Coordinates (T2T) chr6:148600132-148604627  UCSC
Coordinates (hg19) chr6:147727975-147732470  UCSC
Strand +
Parental Sequence NM_001195044.2
Parental seq. overlap 3678 bp
Parental seq. overlap (%) 68.3%
Genomic Region Intergenic
Retrocopy Summary YAP1P1, located on chr6:147406839-147411334, is a retrocopy of the parental gene YAP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YAP1
Full Name Yes1 associated transcriptional regulator
Also known as COB1|YAP|YAP-1|YAP2|YAP65|YKI
Coordinate chr11:102109957-102233424
Strand +
Gene summary This gene encodes a downstream nuclear effector of the Hippo signaling pathway which is involved in development, growth, repair, and homeostasis. This gene is known to play a role in the development and progression of multiple cancers as a transcriptional regulator of this signaling pathway and may function as a potential target for cancer treatment. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Aug 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes YAP1P1
Bonobo Pan paniscus YAP1P1
Gorilla Gorilla gorilla YAP1P1
Orangutan Pongo abelii YAP1P1
Gibbon Nomascus leucogenys YAP1P1
Rhesus Macaca mulatta YAP1P2
Baboon Papio anubis YAP1P2
Golden snub-nosed monkey Rhinopithecus roxellana YAP1P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YAP1P1
GAGCCCTCGCTCGCCTGGTCAGGGAGTGCGTGTCAGGGGTGGGAGAAGCCATGGATCCCGGGCAGCAGCAACTGCCTCAACCGGCCCCCCAGGGCCAAGGGCAGCCACCGGCGCAGCGCCCCCCAGGGGCAGGGCCCGCGGTCCAGACCAGGGCACCCGGCGCCCACGGCGACCCAGGCGGCGCCACAGGCAACCCCCACCGGGCGTCAGATCCTGCACGCCCGCGGGGACTGGGAGAGGAACCTGGAGGCGCTCTTCAACGCCTTCATGAACCCCAAGATGGCCAACGTGCACCAGACCATGCCCATGAGGCTCCGGAAGCTGCCCGACTCTTTCAAGCCGCCCGAGCCCAAGTCCAACTCCCAACGGGTCAGTACTGAGGCAGGCACCGCAGGAGCCCTGACTCCACAGCACGTTCGAGCTCATTCCTCTCCAGCTTCTCTGCAGTTGGGAGCTGTTTCTCCTGGGACACTGACCCCCACTGGAGTAGTTTCTGGCCCAGCAGCTACACCCACAGCTCAGCATTTTCAACAGTCTTCTTTTGAGATACCTGATGATGTACCTCTACCAGCAGCTCGGGAGATGGCGAAGACATCTTCTGGTCAGAGATACTTCTTAAATCACATCGATCAGAAAACAACACAGCAGGACCCCCAGGAAGACCATGCTGTCTCAGATGAATGTTATAGCCAATCCACCAGTGCAGCAGAATATGATGAACTCGGCCTCAGGTCGTCTTCCTGATGGATGGGAACAAGCCATGACTCAGGATGGATAAATTTACTGTATAAACCATAAGAACAAGACCGCCTCTTGGCTAGACCCAAGGCTTGACACTCGTTTTGCCAGGAACCTGAGAATCAGAGTGCTCCAGTGAAACAGCCACCACCCCTGGTTCCCCAGAGCCCACAAGGAGGCGTCATGGTGGCAGCAACTCCAACCAGCAGCGACAGATGCGACCACAGCAACTGCAGATGGAGGAGAGGCTGCAGCTGAAACAGCAATAACTGCTTCAGCAGGAGTTAGCACTGCGTAGCCAGTTACCAACACTGGAGCAGGACGGTGGGACTCAAAATCCAGTGTCTTCTCCCAGGATGTCTCAGGAATTGAGAACAAGGACAGCCAATAGCTCAGATCCTTTCCTTAACCGTGGCACCTATCACTCTCGAGATGAGAGTACAGACAGTGGACTAAGCATGGGCAGCTAGTGACCCTTGCACCGCAGATGACTTCCTGAACAACGTGGATGAGATGGATACAGGTGATACTATCAACCAAAGCACCTTGCCCTCACAGCAGGACCATTTCCCAGACTACCTGGAAGCCATTCCTGGGACAAAAGTGGACCTTGGAACACTGGAAGGAGATGGAATGAACACAGAAGGAGAGGAGATGATGCCAAGTCTGCAGGAAACTCTGAGTTCTGATGTCCTTAATGACGTGGTTTTGTCGGAACCTAGGCAAATGACCATATTAGTGAATCTGTTCATAGTTGTAGCTTGTGGTGGTTATTGTAGTTGTTTTGGTAAAATCTTCATTTCCTGGTTTTTTACCACCTTATTTAAATCTTGATTATCTGCTCTCTCTTTTATATACATATACACACACACAAATATAACATTTATAAGAGTGTGGTAGCAGAATGTATCCTTTTGTTAGGTTTCCCTGCTTTCCAGTTAATTTTTAAAATGGTAGCGCTTTGTATACATTTAGAATACGTGGCGAGTAGTTTATATTTCACTGGTAGTTTAAATCTGGTTGGGGCAGTCCGCAGATATTTGAAGTAGTTTAGTGTTCTAGAAAGAGCTATTACTATGGATAGTGTCTAGGGGAGTGCTCCACGCCCTCTGGGCATATGATAGGTATTATCTGATGAATTGGAAAGGAGCAAACCAGAAATGGCTTTATTTTCTCCCTTGGACTCCCTTGGACTAATTTTTATGTCTTGGTTGGAAATCACTGAGTAGGTTCATAATGTCCATGACAGAAATAAGCTTTATAGTGGTTTACCTTCATTTAGCTTTGGAAGTTTACCTTTGCCTTAGTTTTGAAAGTAAGTTCTAGTTTGTAGTTCTCATTTGTAATGAACACATTAAAGACTAGATTAAAATATTGCCTTCAAGATTGTTCTTACTTATAAGACTTGCTCCTACTTCTGTGGTGAAAATTGACCCTGGATAGAATATTATAAGGTCATGAGTTAGCTGGAAAAGTGATCAGATTAATAAATGTATATTGATAGTTGAATTTAGCAAGGAAATACAGATAATCATGATTATACCTTTATTTTTACAGGAAGAGATTATGTAACTAGAGTATGTGTCTACAGGAATGATAACAGTTTCCAAAGAGTCCAAAGAATATTTTTTAAAGGAACAAAATGAGCATGAATTAACTCTTCAATATAAGCTATGAAGTAAAAGTTGGTTGTGATTGGAAGTAAGAAATTTTATTTTAAGTACTTCCAGTGCTCAAAAAAATGCAGTCACTGTGTTGTATATAATAGTTCATAGGCCAATCACTCATAATAATTGACTCTAAGGCTTTTATTAAGAAAACAGCAGAAAGATTAAATCTTGAATTAAGTCTGGGAGGAAATGGCCACTGTGCAGATGGAGTTTTAGAGTAATAATGAAATTCTACCTAGAATGCAAAATTGGGTATATGAATTATACAGCATGTGGTTGGGATTTTTTTTTAATGTGCAGAAGATCAAAGCTTCTTGGAAGGAGTGCCTATAATTTGCCAGTAGCCACAAATTAAGATTATATCTTATATATCAGCAGAGTAACTTTAGCTTAAGGGGAGGGTGGGAAGGTTTGGGGGGTTGTGAAGATTTAGGGGGGCCATGATAAAGAACCTTATAAACTTCTTTCTCTTTAATAAAGACTTGTCTTACATCTTGCTGTCATTAAAGGCAGCTGTTCCTAGAATTTAAATCACTTAAGTACACCCACAAAACAAGAATATGGAGATCTTCATTTCTCCTCGACTTTAATTTGCCCAGTTATACCTCAGTGTTGTAGCAGTACTTTGATATTACGATACTTTCTGTACTGACCTGAAGGAGACCTAACAGTCCTTTCTCTTTTTGAGTTTGAATCACAGCCTTGATGTGGTATCTGGTTTTATGTCCTTGTTCCTGATGTAAAAGTGATTAACTGCTTCTTGGTTGTGTTGGGTAGCATTGGGATAAGATTTTAACTGGGTATTCTTGAATTGTTTTTATAATAAACCAATTTTATAATCTTTAAATTTATCAGCTTTTTACATTTGTGTTCTTTTCACTCAGGGCTTCTTAGATCTACTTACCGTTCATGGAGCACATTGATTTGGAGATTCAGATCTTCTAAAGCACTATTTGTTGTAATAACTGTTTTCTAAATATAATGCCTTTAAAGGAAAAATGAACACAGGGAAGTGACTTTGCTACAAATAATGTTGCTGTTTTAAGTATTCATATTAAATAGATGCCTTCTATATGGAACATGGCAGAAAGACTGAAAAATAACAGTAATTAATTGTGTAATTCAGAATTCATACCAATCGGTGTTGAAACTCAAACATTGCAAAAATGGGTGGCAATATTCAGTGCTTAACACTTTTATAGCATTGGTACATGTGAAAAATGAGTGTTCAGGTGGATTTTATCCTTGCAAGCATGTTTTTATAAGAATTGTGATTGTGCCTATCATAACAGTTGTTTTCTGTATCTTGAAAAAGTATTCTCCACATTTTAAATGTTTTTATATTAGAGAATTATTTAATGCACACTTGTCAAaGTACTAATGTTACTTTTTATCTTTTGTTTTAGATGTAAGAGCATGCTCATATGTTAGGTACTTACATAAATTGTTACATTATTTTTTCTTATGTAATACCTTTTTGTTTGTTTATGTGGTTCAAATATATTCTTTCCTTAAACTCTT
>NM_001195044.2
CTCAGTCGGGCGCAGCCGCCGCCAGGGAAaagaaagggaggaaggaaggaacaagaaaaggaaataaagagaaaggGGAGGCGGGGAAAGGCAACGAGCTGTCCGGCCTCCGTCAAGGGAGTTGGAGGGAAAAAGTTCTCAGGCGCCGCAGGTCCGAGTGCCTCGCAGCCCCTCCCGAGGCGCAGCCGCCAGACCAGTggagccggggcgcagggcgggggcggaggcgccggggcgggggatgcggggccgcggcgcagCCCCCCGGCCCTGAGAGCGAGGACAGCGCCGCCCGGCCCGCAGCCGTCGCCGCTTCTCCACCTCGGCCCGTGGAGCCGGGGCGTCCGGGCGTAGCCCTCGCTCGCCTGGGTCAGGGGGTGCGCGTCGGGGGAGGCAGAAGCCATGGATCCCGGGCAGCAGCCGCCGCCTCAACCGGCCCCCCAGGGCCAAGGGCAGCCGCCTTCGCAGCCCCCGCAGGGGCAGGGCCCGCCGTCCGGACCCGGGCAACCGGCACCCGCGGCGACCCAGGCGGCGCCGCAGGCACCCCCCGCCGGGCATCAGATCGTGCACGTCCGCGGGGACTCGGAGACCGACCTGGAGGCGCTCTTCAACGCCGTCATGAACCCCAAGACGGCCAACGTGCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCGCCGGAGCCCAAATCCCACTCCCGACAGGCCAGTACTGATGCAGGCACTGCAGGAGCCCTGACTCCACAGCATGTTCGAGCTCATTCCTCTCCAGCTTCTCTGCAGTTGGGAGCTGTTTCTCCTGGGACACTGACCCCCACTGGAGTAGTCTCTGGCCCAGCAGCTACACCCACAGCTCAGCATCTTCGACAGTCTTCTTTTGAGATACCTGATGATGTACCTCTGCCAGCAGGTTGGGAGATGGCAAAGACATCTTCTGGTCAGAGATACTTCTTAAATCACATCGATCAGACAACAACATGGCAGGACCCCAGGAAGGCCATGCTGTCCCAGATGAACGTCACAGCCCCCACCAGTCCACCAGTGCAGCAGAATATGATGAACTCGGCTTCAGGTCCTCTTCCTGATGGATGGGAACAAGCCATGACTCAGGATGGAGAAATTTACTATATAAACCATAAGAACAAGACCACCTCTTGGCTAGACCCAAGGCTTGACCCTCGTTTTGCCATGAACCAGAGAATCAGTCAGAGTGCTCCAGTGAAACAGCCACCACCCCTGGCTCCCCAGAGCCCACAGGGAGGCGTCATGGGTGGCAGCAACTCCAACCAGCAGCAACAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCTGCGGCTGAAACAGCAAGAACTGCTTCGGCAGGAGTTAGCCCTGCGTAGCCAGTTACCAACACTGGAGCAGGATGGTGGGACTCAAAATCCAGTGTCTTCTCCCGGGATGTCTCAGGAATTGAGAACAATGACGACCAATAGCTCAGATCCTTTCCTTAACAGTGGCACCTATCACTCTCGAGATGAGAGTACAGACAGTGGACTAAGCATGAGCAGCTACAGTGTCCCTCGAACCCCAGATGACTTCCTGAACAGTGTGGATGAGATGGATACAGGTGATACTATCAACCAAAGCACCCTGCCCTCACAGCAGAACCGTTTCCCAGACTACCTTGAAGCCATTCCTGGGACAAATGTGGACCTTGGAACACTGGAAGGAGATGGAATGAACATAGAAGGAGAGGAGCTGATGCCAAGTCTGCAGGAAGCTTTGAGTTCTGACATCCTTAATGACATGGAGTCTGTTTTGGCTGCCACCAAGCTAGATAAAGAAAGCTTTCTTACATGGTTATAGAGCCCTCAGGCAGACTGAATTCTAAATCTGTGAAGGATCTAAGGAGACACATGCACCGGAAATTTCCATAAGCCAGTTGCAGTTTTCAGGCTAATACAGAAAAAGATGAACAAACGTCCAGCAAGATACTTTAATCCTCTATTTTGCTCTTCCTTGTCCATTGCTGCTGTTAATGTATTGCTGACCTCTTTCACAGTTGGCTCTAAAGAATCAAAAGAAAAAAACTTTTTATTTCTTTTGCTATTAAAACTACTGTTCATTTTGGGGGCTGGGGGAAGTGAGCCTGTTTGGATGATGGATGCCATTCCTTTTGCCCAGTTAAATGTTCACCAATCATTTTAACTAAATACTCAGACTTAGAAGTCAGATGCTTCATGTCACAGCATTTAGTTTGTTCAACAGTTGTTTCTTCAGCTTCCTTTGTCCAGTGGAAAAACATGATTTACTGGTCTGACAAGCCAAAAATGTTATATCTGATATTAAATACTTAATGCTGATTTGAAGAGATAGCTGAAACCAAGGCTGAAGACTGTTTTACTTTCAGTATTTTCTTTTCCTCCTAGTGCTATCATTAGTCACATAATGACCTTGATTTTATTTTAGGAGCTTATAAGGCATGAGACAATTTCCATATAAATATATTAATTATTGCCACATACTCTAATATAGATTTTGGTGGATAATTTTGTGGGTGTGCAttttgttctgttttgttgggttttttgttttttttgtttttggcagggtcggtgggggggttggttggttggttggttTTGTCGGAACCTAGGCAAATGACCATATTAGTGAATCTGTTAATAGTTGTAGCTTGGGATGGTTATTGTAGTTGTTTTGGTAAAATCTTCATTTCCTGGTTTTTTTTACCACCTTATTTAAATCTCGATTATCTGCTCTCTCTTTTATATACATACACACACCCAAACATAACATTTATAATAGTGTGGTAGTGGAATGTATCCTTTTTTAGGTTTCCCTGCTTTCCAGTTAATTTTTAAAATGGTAGCGCTTTGTATGCATTTAGAATACATGACTAGTAGTTTATATTTCACTGGTAGTTTAAATCTGGTTGGGGCAGTCTGCAGATGTTTGAAGTAGTTTAGTGTTCTAGAAAGAGCTATTACTGTGGATAGTGCCTAGGGGAGTGCTCCACGCCCTCTGGGCATACGGTAGATATTATCTGATGAATTGGAAAGGAGCAAACCAGAAATGGCTTTATTTTCTCCCTTGGACTAATTTTTAAGTCTCGATTGGAATTCAGTGAGTAGGTTCATAATGTGCATGACAGAAATAAGCTTTATAGTGGTTTACCTTCATTTAGCTTTGGAAGTTTTCTTTGCCTTAGTTTTGGAAGTAAATTCTAGTTTGTAGTTCTCATTTGTAATGAACACATTAACGACTAGATTAAAATATTGCCTTCAAGATTGTTCTTACTTACAAGACTTGCTCCTACTTCTATGCTGAAAATTGACCCTGGATAGAATACTATAAGGTTTTGAGTTAGCTGGAAAAGTGATCAGATTAATAAATGTATATTGGTAGTTGAATTTAGCAAAGAAATAGAGATAATCATGATTATACCTTTATTTTTACAGGAAGAGATGATGTAACTAGAGTATGTGTCTACAGGAGTAATAATGGTTTCCAAAGAGTATTTTTTAAAGGAACAAAACGAGCATGAATTAACTCTTCAATATAAGCTATGAAGTAATAGTTGGTTGTGAattaaagtggcaccagctagcacctctgtgttttaagggtctttcaatgtttctagaataagcccttattttcaagggttcataacaggcataaaatctcttctcctggcaaaagctgctatgaaaagcctcagcttgggaagatagatttttttccccccaattacaaaatctaagtattttggcccttcaatttggaggagggcaaaagTTGGAAGTAAGAAGTTTTATTTTAAGTACTTTCAGTGCTCAAAAAAATGCAATCACTGTGTTGTATATAATAGTTCATAGGTTGATCACTCATAATAATTGACTCTAAGGCTTTTATTAAGAAAACAGCAGAAAGATTAAATCTTGAATTAAGTCTGGGGGGAAATGGCCACTGCAGATGGAGTTTTAGAGTAGTAATGAAATTCTACCTAGAATGCAAAATTGGGTATATGAATTACATAGCATGTTGTTGGGATTTTTTTTAATGTGCAGAAGATCAAAGCTACTTGGAAGGAGTGCCTATAATTTGCCAGTAGCCACAGATTAAGATTATATCTTATATATCAGCAGATTAGCTTTAGCTTAGGGGGAGGGTGGGAAAGTTTGGGGGGGGGGTTGTGAAGATTTAGGGGGACCTTGATAGAGAACTTTATAAACTTCTTTCTCTTTAATAAAGACTTGTCTTACACCGTGCTGCCATTAAAGGCAGCTGTTCTAGAGTTTCAGTCACCTAAGTACACCCACAAAACAATATGAATATGGAGATCTTCCTTTACCCCTCAACTTTAATTTGCCCAGTTATACCTCAGTGTTGTAGCAGTACTGTGATACCTGGCACAGTGCTTTGATCTTACGATGCCCTCTGTACTGACCTGAAGGAGACCTAAGAGTCCTTTCCCTTTTTGAGTTTGAATCATAGCCTTGATGTGGTCTCTTGTTTTATGTCCTTGTTCCTAATGTAAAAGTGCTTAACTGCTTCTTGGTTGTATTGGGTAGCATTGGGATAAGATTTTAACTGGGTATTCTTGAATTGCTTTTACAATAAACCAATTTTATAATCTTTAAATTTATCAACTTTTTACATTTGTGTTATTTTCAGTCAGGGCTTCTTAGATCTACTTATGGTTGATGGAGCACATTGATTTGGAGTTTCAGATCTTCCAAAGCACTATTTGTTGTAATAACTTTTCTAAATGTAGTGCCTTTAAAGGAAAAATGAACACAGGGAAGTGACTTTGCTACAAATAATGTTGCTGTGTTAAGTATTCATATTAAATACATGCCTTCTATATGGAACATGGCAGAAAGACTGAAAAATAACAGTAATTAATTGTGTAATTCAGAATTCATACCAATCAGTGTTGAAACTCAAACATTGCAAAAGTGGGTGGCAATATTCAGTGCTTAACACTTTTCTAGCGTTGGTACATCTGAGAAATGAGTGCTCAGGTGGATTTTATCCTCGCAAGCATGTTGTTATAAGAATTGTGGGTGTGCCTATCATAACAATTGTTTTCTGTATCTTGAAAAAGTATTCTCCACATTTTAAATGTTTTATATTAGAGAATTCTTTAATGCACACTTGTCAAATATATATATATAGTACCAATGTTACCTTTTTATTTTTTGTTTTAGATGTAAGAGCATGCTCATATGTTAGGTACTTACATAAATTGTTACATTATTTTTTCTTATGTAATACCTTTTTGTTTGTTTATGTGGTTCAAATATATTCTTTCCTTAAACTCTTC

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